NonredundantMotifs:43: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|PWM=P0;A;C;G;T!1;6.958208;268.692007;35.78313;18.871575!2;207.232686;52.653478;57.509645;12.909111!3;120.000732;70.577211;44.653625;95.073352!4;4.952151;152.757733;54.588655;118.006381!5;24.774256;11.933058;2.953644;290.643962!6;0;313.415701;0;16.889219!7;0;330.30492;0;0!8;0;328.311068;0;1.993852!9;296.581291;0;22.792986;10.930643!10;14.833301;27.722328;259.049534;28.699757!11;118.14522;128.968678;83.191022;0!12;229.053256;18.905325;75.448882;6.897457!13;23.776912;10.916331;46.61576;248.995917!14;28.858041;31.713098;240.87422;28.859561!15;0;325.341335;2.968624;1.994961!16;78.282615;171.630416;4.977524;75.414365!17;40.623781;155.774489;49.643717;84.262933!18;10.949598;183.332675;6.927346;129.095301!19;15.880708;5.969678;297.525443;10.929091!20;14.862284;264.817496;44.653755;5.971385 | |PWM=P0;A;C;G;T!1;6.958208;268.692007;35.78313;18.871575!2;207.232686;52.653478;57.509645;12.909111!3;120.000732;70.577211;44.653625;95.073352!4;4.952151;152.757733;54.588655;118.006381!5;24.774256;11.933058;2.953644;290.643962!6;0;313.415701;0;16.889219!7;0;330.30492;0;0!8;0;328.311068;0;1.993852!9;296.581291;0;22.792986;10.930643!10;14.833301;27.722328;259.049534;28.699757!11;118.14522;128.968678;83.191022;0!12;229.053256;18.905325;75.448882;6.897457!13;23.776912;10.916331;46.61576;248.995917!14;28.858041;31.713098;240.87422;28.859561!15;0;325.341335;2.968624;1.994961!16;78.282615;171.630416;4.977524;75.414365!17;40.623781;155.774489;49.643717;84.262933!18;10.949598;183.332675;6.927346;129.095301!19;15.880708;5.969678;297.525443;10.929091!20;14.862284;264.817496;44.653755;5.971385 | ||
|entrez_gene_id=ZNF143 | |entrez_gene_id=ZNF143 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN143_si~IKZF1_f1~SUH_f1 /HOMER:ZNF143_CUTLL-ZNF143-ChIP-Seq(GSE29600) /JASPAR:MA0088.1;znf143 /SWISSREGULON:ZNF143.p2~RBPJ.p2~IKZF1.p2 | ||
|name= | |name=non-redundant43 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=ZNF143.p2 | |representative_motif_id=ZNF143.p2 | ||
| Line 12: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Revision as of 16:46, 29 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant43
- db :SWISSREGULON
- Id :ZNF143.p2
- name :ZNF143
- score :0.8620777319425877
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
