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NonredundantMotifs:4: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.363104406143578;0.182807397235804;0.145232265284285;0.308855931336333!2;0.419706936019113;0.133741609456235;0.222546460467887;0.224004994056765!3;0.164481236314068;0.41826300729661;0.0523973849957852;0.364858371393536!4;0.715574813040791;0.117639228649443;0.0649135911826016;0.101872367127164!5;0.883835735868732;0.0269845948903728;0.0325840420280776;0.0565956272128175!6;0.558796747279541;0.151279687766369;0.0331203736260355;0.256803191328054!7;0.267037236649625;0.403487712704613;0.0267455887929127;0.302729461852849!8;0.939762429268571;0.0136273552067844;0.0345785458680749;0.0120316696565693!9;0.897071797708074;0.00987812543350158;0.0356416109185662;0.0574084659398582!10;0.305903810077852;0.516039588691412;0.0553108744145804;0.122745726816156!11;0.880940439447128;0.0279576395653296;0.0483500016585169;0.0427519193290249!12;0.710082317498233;0.0524635693886733;0.040249781043959;0.197204332069135!13;0.246712084904475;0.12515544068816;0.318626704021001;0.309505770386363!14;0.429749499323936;0.181755030656899;0.176892468369937;0.211603001649228!15;0.33964315412751;0.0972159314637004;0.355249527460469;0.20789138694832
|PWM=P0;A;C;G;T!1;18.17095435684646;6.60248962655604;18.565975103734456;14.390041493775945!2;15.518672199170117;5.078838174273861;20.089626556016622;17.04232365145229!3;2.9344398340249005;18.17095435684646;14.22074688796682;22.40331950207472!4;3.9502074688796696;9.029045643153513;2.9344398340249005;41.81576763485479!5;0.0;1.0157676348547746;0.0;56.71369294605816!6;4.063070539419087;0.0;53.66639004149383;0.0!7;1.0157676348547746;0.0;0.0;56.71369294605816!8;1.0157676348547746;0.0;0.0;56.71369294605816!9;0.0;0.0;3.9502074688796696;53.77925311203326!10;27.651452282157713;1.918672199170126;3.9502074688796696;24.209128630705386!11;1.0157676348547746;25.619917012448116;16.590871369294604;14.502904564315378!12;16.139419087136922;7.787551867219904;10.665560165975116;23.1369294605809!13;15.913692946058113;6.094605809128613;5.191701244813279;30.52946058091287!14;11.173443983402485;11.173443983402485;11.173443983402485;24.209128630705386!15;9.931950207468876;3.160165975103735;12.753526970954342;31.88381742738591!16;8.408298755186708;8.295435684647332;8.634024896265577;32.391701244813284
|entrez_gene_id=7584
|entrez_gene_id=2308
|motif_cluster_2013_march_motif_members= /JASPAR:MA0047.2;Foxa2~MA0040.1;Foxq1~MA0030.1;FOXF2~MA0041.1;Foxd3~MA0157.1;FOXO3~MA0031.1;FOXD1~MA0148.1;FOXA1~MA0042.1;FOXI1 /SWISSREGULON:FOXA2.p3~FOX(F1,F2,J1).p2~FOX(I1,J2).p2~FOXD3.p2~FOX(D1,D2).p2~FOXO1,3,4.p2~FOXQ1.p2 /HOMER:FOXA1_MCF7-FOXA1-ChIP-Seq~FOXO1_RAW-Foxo1-ChIP-Seq~FOXA1_LNCAP-FOXA1-ChIP-Seq~FOXA2_Liver-Foxa2-ChIP-Seq~FOXP1_H9-FOXP1-ChIP-Seq(GSE31006) /UNIPROBE:Zfp105_primary;SCI09~Foxj3_primary;SCI09~Foxa2_primary;SCI09~Foxl1_primary;SCI09~Foxj1_primary;SCI09~Foxk1_primary;SCI09 /HOCOMOCO:FOXA3_f1~FOXQ1_f1~FOXO3_si~FOXA2_f1~FOXJ3_f2~FOXF2_f1~FOXD1_si~FOXA1_f1~FOXP2_si~FOXJ2_f1~FOXF1_f1~FOXO1_si~FOXD3_f1~FOXC1_f1~FOXO4_f1~FOXJ3_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:FOXJ3_f2~FOXD3_f1~FOXC1_f1~FOXF2_f1~FOXD1_si~FOXO4_f1~FOXO1_si~FOXJ2_f1~FOXJ3_si~FOXA2_f1~FOXO3_si~FOXF1_f1~FOXA1_f1~FOXA3_f1~FOXQ1_f1~FOXP2_si /HOMER:FOXO1_RAW-Foxo1-ChIP-Seq~FOXA1_LNCAP-FOXA1-ChIP-Seq~FOXA1_MCF7-FOXA1-ChIP-Seq~FOXA2_Liver-Foxa2-ChIP-Seq~FOXP1_H9-FOXP1-ChIP-Seq(GSE31006) /JASPAR:MA0041.1;Foxd3~MA0031.1;FOXD1~MA0047.2;Foxa2~MA0030.1;FOXF2~MA0042.1;FOXI1~MA0148.1;FOXA1~MA0157.1;FOXO3~MA0040.1;Foxq1 /SWISSREGULON:FOX(D1,D2).p2~FOXD3.p2~FOX(F1,F2,J1).p2~FOXQ1.p2~FOX(I1,J2).p2~FOXO1,3,4.p2~FOXA2.p3 /UNIPROBE:Foxj1_primary;SCI09~Foxl1_primary;SCI09~Foxa2_primary;SCI09~Zfp105_primary;SCI09~Foxk1_primary;SCI09~Foxj3_primary;SCI09
|name=known4
|name=non-redundant4
|representative_motif_db=UNIPROBE
|representative_motif_db=HOCOMOCO
|representative_motif_id=Zfp105_primary
|representative_motif_id=FOXO1_si
|representative_motif_name=SCI09
|representative_motif_name=  
|score=1.676164778945942
|score=0.2072721579550899
|uniprot_entry_name=ZNF35_HUMAN
|uniprot_entry_name=FOXO1_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant4
  • db :HOCOMOCO
  • Id :FOXO1_si
  • name  :
  • score :0.2072721579550899
  • External refs:
EntrezGene:2308
UniProt:2308

  • Internal refs:
EntrezGene:2308


Motif matrix
P0ACGT
118.170954356846466.6024896265560418.56597510373445614.390041493775945
215.5186721991701175.07883817427386120.08962655601662217.04232365145229
32.934439834024900518.1709543568464614.2207468879668222.40331950207472
43.95020746887966969.0290456431535132.934439834024900541.81576763485479
50.01.01576763485477460.056.71369294605816
64.0630705394190870.053.666390041493830.0
71.01576763485477460.00.056.71369294605816
81.01576763485477460.00.056.71369294605816
90.00.03.950207468879669653.77925311203326
1027.6514522821577131.9186721991701263.950207468879669624.209128630705386
111.015767634854774625.61991701244811616.59087136929460414.502904564315378
1216.1394190871369227.78755186721990410.66556016597511623.1369294605809
1315.9136929460581136.0946058091286135.19170124481327930.52946058091287
1411.17344398340248511.17344398340248511.17344398340248524.209128630705386
159.9319502074688763.16016597510373512.75352697095434231.88381742738591
168.4082987551867088.2954356846473328.63402489626557732.391701244813284

Sub Motif Members

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