NonredundantMotifs:69: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|PWM=P0;A;C;G;T!1;1;6;1;4!2;9;0;3;0!3;0;12;0;0!4;12;0;0;0!5;0;0;0;12!6;0;0;0;12!7;0;12;0;0!8;0;11;0;1!9;5;0;0;7!10;1;7;4;0!11;2;4;3;3!12;0;2;8;2 | |PWM=P0;A;C;G;T!1;1;6;1;4!2;9;0;3;0!3;0;12;0;0!4;12;0;0;0!5;0;0;0;12!6;0;0;0;12!7;0;12;0;0!8;0;11;0;1!9;5;0;0;7!10;1;7;4;0!11;2;4;3;3!12;0;2;8;2 | ||
|entrez_gene_id=7003 | |entrez_gene_id=7003 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0090.1;TEAD1 /SWISSREGULON:TEAD1.p2 /HOCOMOCO:TEAD3_si~TEAD1_f1 | ||
|name=known69 | |name=known69 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known69
- db :JASPAR
- Id :MA0090.1
- name :TEAD1
- score :0.1929336002514893
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
