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NonredundantMotifs:59: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;116.435898;37.725434;37.563411;93.624007!2;145.645849;7.781983;6.484858;125.43606!3;169.630251;6.243395;17.7395;91.735604!4;24.806274;10.919018;0.729676;248.893782!5;266.254944;1.506495;7.575862;10.011449!6;281.56035;0.910397;1.38455;1.493453!7;20.768344;0.752575;248.851998;14.975833!8;2.997625;4.111507;0;278.239618!9;247.194933;2.347959;35.805858;0!10;33.442242;53.883022;4.943265;193.080221!11;166.999221;0.806899;32.612778;84.929852!12;51.030239;30.272764;10.706358;193.339389
|PWM=P0;A;C;G;T!1;116.435898;37.725434;37.563411;93.624007!2;145.645849;7.781983;6.484858;125.43606!3;169.630251;6.243395;17.7395;91.735604!4;24.806274;10.919018;0.729676;248.893782!5;266.254944;1.506495;7.575862;10.011449!6;281.56035;0.910397;1.38455;1.493453!7;20.768344;0.752575;248.851998;14.975833!8;2.997625;4.111507;0;278.239618!9;247.194933;2.347959;35.805858;0!10;33.442242;53.883022;4.943265;193.080221!11;166.999221;0.806899;32.612778;84.929852!12;51.030239;30.272764;10.706358;193.339389
|entrez_gene_id=
|entrez_gene_id=NKX3-1
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOX(C1,C2).p2~NKX3-1.p2 /JASPAR:MA0032.1;FOXC1~MA0124.1;NKX3-1 /HOCOMOCO:NKX31_si
|motif_cluster_2013_march_motif_members= /JASPAR:MA0032.1;FOXC1~MA0124.1;NKX3-1 /SWISSREGULON:FOX(C1,C2).p2~NKX3-1.p2 /HOCOMOCO:NKX31_si
|name=known59
|name=known59
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=NKX3-1.p2
|representative_motif_id=NKX3-1.p2
|representative_motif_name=  
|representative_motif_name=NKX3-1
|score=0.08646865630457126
|score=0.08646865630457126
|uniprot_entry_name=
|uniprot_entry_name=NKX3-1
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known59
  • db :SWISSREGULON
  • Id :NKX3-1.p2
  • name :NKX3-1
  • score :0.08646865630457126
  • External refs:
EntrezGene:NKX3-1
UniProt:NKX3-1

  • Internal refs:
EntrezGene:NKX3-1


Motif matrix
P0ACGT
1116.43589837.72543437.56341193.624007
2145.6458497.7819836.484858125.43606
3169.6302516.24339517.739591.735604
424.80627410.9190180.729676248.893782
5266.2549441.5064957.57586210.011449
6281.560350.9103971.384551.493453
720.7683440.752575248.85199814.975833
82.9976254.1115070278.239618
9247.1949332.34795935.8058580
1033.44224253.8830224.943265193.080221
11166.9992210.80689932.61277884.929852
1251.03023930.27276410.706358193.339389

Sub Motif Members