NonredundantMotifs:40: Difference between revisions
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|PWM=P0;A;C;G;T!1;0.345146488013258;0.26105897598822;0.273931110860127;0.119863425138395!2;0.22213719373244;0.272923002708112;0.332023618603445;0.172916184956003!3;0.269602465977963;0.278951419673728;0.245220682323427;0.206225432024882!4;0.485405791720008;0.144018099371158;0.294420682111543;0.0761554267972912!5;0.577730594798247;0.270563099425945;0.0789547842576704;0.072751521518137!6;0.0700269105790002;0.750815784849967;0.0628186475434988;0.116338657027534!7;0.685017697670726;0.105175239349362;0.137110344038653;0.0726967189412585!8;0.162574046433077;0.071040993448798;0.638464241766771;0.127920718351355!9;0.343240301234647;0.389633340632279;0.206226161983908;0.060900196149167!10;0.0801690845698969;0.790322888125634;0.114210602632884;0.0152974246715846!11;0.167034629133321;0.201642309694909;0.462780389853469;0.168542671318301!12;0.114383107808223;0.664317079667594;0.166143102371949;0.0551567101522349!13;0.39214312802688;0.114474613925907;0.340084685645908;0.153297572401304!14;0.208147487120144;0.577473165873016;0.142693639531859;0.0716857074749806!15;0.16863150929973;0.56313543715974;0.0661812155220432;0.202051838018487 | |PWM=P0;A;C;G;T!1;0.345146488013258;0.26105897598822;0.273931110860127;0.119863425138395!2;0.22213719373244;0.272923002708112;0.332023618603445;0.172916184956003!3;0.269602465977963;0.278951419673728;0.245220682323427;0.206225432024882!4;0.485405791720008;0.144018099371158;0.294420682111543;0.0761554267972912!5;0.577730594798247;0.270563099425945;0.0789547842576704;0.072751521518137!6;0.0700269105790002;0.750815784849967;0.0628186475434988;0.116338657027534!7;0.685017697670726;0.105175239349362;0.137110344038653;0.0726967189412585!8;0.162574046433077;0.071040993448798;0.638464241766771;0.127920718351355!9;0.343240301234647;0.389633340632279;0.206226161983908;0.060900196149167!10;0.0801690845698969;0.790322888125634;0.114210602632884;0.0152974246715846!11;0.167034629133321;0.201642309694909;0.462780389853469;0.168542671318301!12;0.114383107808223;0.664317079667594;0.166143102371949;0.0551567101522349!13;0.39214312802688;0.114474613925907;0.340084685645908;0.153297572401304!14;0.208147487120144;0.577473165873016;0.142693639531859;0.0716857074749806!15;0.16863150929973;0.56313543715974;0.0661812155220432;0.202051838018487 | ||
|entrez_gene_id=4618 | |entrez_gene_id=4618 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:SMAD1..7,9.p2~HAND1,2.p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0092.1;Hand1::Tcfe2a /SWISSREGULON:SMAD1..7,9.p2~HAND1,2.p2 /UNIPROBE:Smad3_primary;SCI09~Myf6_secondary;SCI09 /HOCOMOCO:SMAD4_si~HAND1_si~SMAD2_si~SMAD3_f1 | ||
|name=known40 | |name=known40 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known40
- db :UNIPROBE
- Id :Myf6_secondary
- name :SCI09
- score :2.726383469789969
- External refs:
- Internal refs:
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Sub Motif Members
