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NonredundantMotifs:4: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.363104406143578;0.182807397235804;0.145232265284285;0.308855931336333!2;0.419706936019113;0.133741609456235;0.222546460467887;0.224004994056765!3;0.164481236314068;0.41826300729661;0.0523973849957852;0.364858371393536!4;0.715574813040791;0.117639228649443;0.0649135911826016;0.101872367127164!5;0.883835735868732;0.0269845948903728;0.0325840420280776;0.0565956272128175!6;0.558796747279541;0.151279687766369;0.0331203736260355;0.256803191328054!7;0.267037236649625;0.403487712704613;0.0267455887929127;0.302729461852849!8;0.939762429268571;0.0136273552067844;0.0345785458680749;0.0120316696565693!9;0.897071797708074;0.00987812543350158;0.0356416109185662;0.0574084659398582!10;0.305903810077852;0.516039588691412;0.0553108744145804;0.122745726816156!11;0.880940439447128;0.0279576395653296;0.0483500016585169;0.0427519193290249!12;0.710082317498233;0.0524635693886733;0.040249781043959;0.197204332069135!13;0.246712084904475;0.12515544068816;0.318626704021001;0.309505770386363!14;0.429749499323936;0.181755030656899;0.176892468369937;0.211603001649228!15;0.33964315412751;0.0972159314637004;0.355249527460469;0.20789138694832
|PWM=P0;A;C;G;T!1;0.363104406143578;0.182807397235804;0.145232265284285;0.308855931336333!2;0.419706936019113;0.133741609456235;0.222546460467887;0.224004994056765!3;0.164481236314068;0.41826300729661;0.0523973849957852;0.364858371393536!4;0.715574813040791;0.117639228649443;0.0649135911826016;0.101872367127164!5;0.883835735868732;0.0269845948903728;0.0325840420280776;0.0565956272128175!6;0.558796747279541;0.151279687766369;0.0331203736260355;0.256803191328054!7;0.267037236649625;0.403487712704613;0.0267455887929127;0.302729461852849!8;0.939762429268571;0.0136273552067844;0.0345785458680749;0.0120316696565693!9;0.897071797708074;0.00987812543350158;0.0356416109185662;0.0574084659398582!10;0.305903810077852;0.516039588691412;0.0553108744145804;0.122745726816156!11;0.880940439447128;0.0279576395653296;0.0483500016585169;0.0427519193290249!12;0.710082317498233;0.0524635693886733;0.040249781043959;0.197204332069135!13;0.246712084904475;0.12515544068816;0.318626704021001;0.309505770386363!14;0.429749499323936;0.181755030656899;0.176892468369937;0.211603001649228!15;0.33964315412751;0.0972159314637004;0.355249527460469;0.20789138694832
|entrez_gene_id=7584
|entrez_gene_id=7584
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXA2.p3~FOX(F1,F2,J1).p2~FOX(I1,J2).p2~FOXD3.p2~FOX(D1,D2).p2~FOXO1,3,4.p2~FOXQ1.p2 /JASPAR:MA0047.2;Foxa2~MA0040.1;Foxq1~MA0030.1;FOXF2~MA0041.1;Foxd3~MA0157.1;FOXO3~MA0031.1;FOXD1~MA0148.1;FOXA1~MA0042.1;FOXI1 /HOMER:FOXA1_MCF7-FOXA1-ChIP-Seq~FOXO1_RAW-Foxo1-ChIP-Seq~FOXA1_LNCAP-FOXA1-ChIP-Seq~FOXA2_Liver-Foxa2-ChIP-Seq~FOXP1_H9-FOXP1-ChIP-Seq(GSE31006) /UNIPROBE:Zfp105_primary;SCI09~Foxj3_primary;SCI09~Foxa2_primary;SCI09~Foxl1_primary;SCI09~Foxj1_primary;SCI09~Foxk1_primary;SCI09 /HOCOMOCO:FOXA3_f1~FOXQ1_f1~FOXO3_si~FOXA2_f1~FOXJ3_f2~FOXF2_f1~FOXD1_si~FOXA1_f1~FOXP2_si~FOXJ2_f1~FOXF1_f1~FOXO1_si~FOXD3_f1~FOXC1_f1~FOXO4_f1~FOXJ3_si
|motif_cluster_2013_march_motif_members= /JASPAR:MA0047.2;Foxa2~MA0040.1;Foxq1~MA0030.1;FOXF2~MA0041.1;Foxd3~MA0157.1;FOXO3~MA0031.1;FOXD1~MA0148.1;FOXA1~MA0042.1;FOXI1 /SWISSREGULON:FOXA2.p3~FOX(F1,F2,J1).p2~FOX(I1,J2).p2~FOXD3.p2~FOX(D1,D2).p2~FOXO1,3,4.p2~FOXQ1.p2 /HOMER:FOXA1_MCF7-FOXA1-ChIP-Seq~FOXO1_RAW-Foxo1-ChIP-Seq~FOXA1_LNCAP-FOXA1-ChIP-Seq~FOXA2_Liver-Foxa2-ChIP-Seq~FOXP1_H9-FOXP1-ChIP-Seq(GSE31006) /UNIPROBE:Zfp105_primary;SCI09~Foxj3_primary;SCI09~Foxa2_primary;SCI09~Foxl1_primary;SCI09~Foxj1_primary;SCI09~Foxk1_primary;SCI09 /HOCOMOCO:FOXA3_f1~FOXQ1_f1~FOXO3_si~FOXA2_f1~FOXJ3_f2~FOXF2_f1~FOXD1_si~FOXA1_f1~FOXP2_si~FOXJ2_f1~FOXF1_f1~FOXO1_si~FOXD3_f1~FOXC1_f1~FOXO4_f1~FOXJ3_si
|name=known4
|name=known4
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known4
  • db :UNIPROBE
  • Id :Zfp105_primary
  • name :SCI09
  • score :1.676164778945942
  • External refs:
EntrezGene:7584
UniProt:7584

  • Internal refs:
EntrezGene:7584


Motif matrix
P0ACGT
10.3631044061435780.1828073972358040.1452322652842850.308855931336333
20.4197069360191130.1337416094562350.2225464604678870.224004994056765
30.1644812363140680.418263007296610.05239738499578520.364858371393536
40.7155748130407910.1176392286494430.06491359118260160.101872367127164
50.8838357358687320.02698459489037280.03258404202807760.0565956272128175
60.5587967472795410.1512796877663690.03312037362603550.256803191328054
70.2670372366496250.4034877127046130.02674558879291270.302729461852849
80.9397624292685710.01362735520678440.03457854586807490.0120316696565693
90.8970717977080740.009878125433501580.03564161091856620.0574084659398582
100.3059038100778520.5160395886914120.05531087441458040.122745726816156
110.8809404394471280.02795763956532960.04835000165851690.0427519193290249
120.7100823174982330.05246356938867330.0402497810439590.197204332069135
130.2467120849044750.125155440688160.3186267040210010.309505770386363
140.4297494993239360.1817550306568990.1768924683699370.211603001649228
150.339643154127510.09721593146370040.3552495274604690.20789138694832

Sub Motif Members

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