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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.298360284626179;0.124864928840929;0.240783052041331;0.335991734491562!2;0.184299645185153;0.17461719160416;0.373392099087098;0.267691064123589!3;0.150631616427434;0.435098682963459;0.254062258194144;0.160207442414963!4;0.212569130734739;0.220346774757132;0.370970758259475;0.196113336248654!5;0.258171019602728;0.316689142831233;0.186896432220568;0.238243405345471!6;0.872370741639165;0.05170333320847;0.0707912362238046;0.00513468892856083!7;0.0115601519285019;0.0176715220534332;0.00974648864772653;0.961021837370338!8;0.888546215091524;0.0429637769696799;0.0617580753899475;0.00673193254884886!9;0.071365352493578;0.00998162295762339;0.801504821716069;0.117148202832729!10;0.0106570468781062;0.0149609902305669;0.949285828707523;0.0250961341838044!11;0.00449602133633187;0.00994130982819472;0.97838056019994;0.00718210863553357!12;0.0056454622449419;0.0102940436244647;0.972682109072685;0.0113783850579088!13;0.499894710036396;0.152322217980078;0.335875323944902;0.0119077480386241!14;0.109409732586614;0.346383955828245;0.380529062059147;0.163677249525994!15;0.371763615486741;0.0961816796074846;0.457998629174618;0.0740560757311557!16;0.45020714224879;0.392208089691539;0.0656863122590817;0.0918984558005887!17;0.104224395861056;0.228466891608051;0.391472950013122;0.275835762517771
|entrez_gene_id=8521
|entrez_gene_id=8521
|motif_cluster_2013_march_motif_members= /UNIPROBE:Gcm1_secondary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:Gcm1_secondary;SCI09

Revision as of 10:49, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known207
  • db :UNIPROBE
  • Id :Gcm1_secondary
  • name :SCI09
  • score :0.44591874875310084
  • External refs:
EntrezGene:8521
UniProt:8521

  • Internal refs:
EntrezGene:8521


Motif matrix
P0ACGT
10.2983602846261790.1248649288409290.2407830520413310.335991734491562
20.1842996451851530.174617191604160.3733920990870980.267691064123589
30.1506316164274340.4350986829634590.2540622581941440.160207442414963
40.2125691307347390.2203467747571320.3709707582594750.196113336248654
50.2581710196027280.3166891428312330.1868964322205680.238243405345471
60.8723707416391650.051703333208470.07079123622380460.00513468892856083
70.01156015192850190.01767152205343320.009746488647726530.961021837370338
80.8885462150915240.04296377696967990.06175807538994750.00673193254884886
90.0713653524935780.009981622957623390.8015048217160690.117148202832729
100.01065704687810620.01496099023056690.9492858287075230.0250961341838044
110.004496021336331870.009941309828194720.978380560199940.00718210863553357
120.00564546224494190.01029404362446470.9726821090726850.0113783850579088
130.4998947100363960.1523222179800780.3358753239449020.0119077480386241
140.1094097325866140.3463839558282450.3805290620591470.163677249525994
150.3717636154867410.09618167960748460.4579986291746180.0740560757311557
160.450207142248790.3922080896915390.06568631225908170.0918984558005887
170.1042243958610560.2284668916080510.3914729500131220.275835762517771

Sub Motif Members