NonredundantMotifs:191: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=6596
|motif_cluster_2013_march_motif_members= /HOCOMOCO:HLTF_f1
|name=known191
|representative_motif_db=HOCOMOCO
|representative_motif_id=H...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;1.5;1.5;3.38888888888889;3.61111111111111!2;6.77777777777778;0.0;3.22222222222222;0.0!3;3.0;1.7777777777777801;3.22222222222222;2.0!4;0.0;0.0;6.22222222222222;3.77777777777778!5;1.0;0.0;6.111111111111111;2.8888888888888897!6;2.8888888888888897;7.111111111111111;0.0;0.0!7;2.0;0.8888888888888891;0.0;7.111111111111111!8;0.0;0.8888888888888891;9.11111111111111;0.0!9;0.0;5.88888888888889;4.11111111111111;0.0!10;6.111111111111111;3.88888888888889;0.0;0.0!11;9.0;0.0;0.0;1.0!12;5.388888888888889;3.61111111111111;0.5;0.5 | |||
|entrez_gene_id=6596 | |entrez_gene_id=6596 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:HLTF_f1 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:HLTF_f1 | ||
Revision as of 10:48, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known191
- db :HOCOMOCO
- Id :HLTF_f1
- name :
- score :0.06404083328587125
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
