Personal tools

NonredundantMotifs:166: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Known_motif |entrez_gene_id=7004 |motif_cluster_2013_march_motif_members= /HOCOMOCO:TEAD4_f1 |name=known166 |representative_motif_db=HOCOMOCO |representative_motif_id=...")
 
No edit summary
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;8.017341040462396;0.0;1.0982658959537526;1.9768786127167521!2;1.0982658959537526;0.0;9.005780346820773;0.9884393063583773!3;5.052023121387257;0.9884393063583773;5.052023121387268;0.0!4;1.0982658959537526;0.0;9.005780346820773;0.9884393063583773!5;4.173410404624257;5.930635838150268;0.0;0.9884393063583773!6;0.0;0.0;0.0;11.0924855491329!7;7.0289017341040205;0.0;4.06358381502888;0.0!8;0.0;0.0;2.965317919075128;8.127167630057773!9;0.0;0.0;0.0;11.0924855491329!10;2.965317919075128;0.0;1.0982658959537526;7.0289017341040205!11;0.0;1.0982658959537526;0.0;9.99421965317915!12;0.0;0.0;0.0;11.0924855491329
|entrez_gene_id=7004
|entrez_gene_id=7004
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TEAD4_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TEAD4_f1

Revision as of 10:48, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known166
  • db :HOCOMOCO
  • Id :TEAD4_f1
  • name  :
  • score :0.05723784832245734
  • External refs:
EntrezGene:7004
UniProt:7004

  • Internal refs:
EntrezGene:7004


Motif matrix
P0ACGT
18.0173410404623960.01.09826589595375261.9768786127167521
21.09826589595375260.09.0057803468207730.9884393063583773
35.0520231213872570.98843930635837735.0520231213872680.0
41.09826589595375260.09.0057803468207730.9884393063583773
54.1734104046242575.9306358381502680.00.9884393063583773
60.00.00.011.0924855491329
77.02890173410402050.04.063583815028880.0
80.00.02.9653179190751288.127167630057773
90.00.00.011.0924855491329
102.9653179190751280.01.09826589595375267.0289017341040205
110.01.09826589595375260.09.99421965317915
120.00.00.011.0924855491329

Sub Motif Members