NonredundantMotifs:156: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=2034
|motif_cluster_2013_march_motif_members= /HOCOMOCO:EPAS1_si
|name=known156
|representative_motif_db=HOCOMOCO
|representative_motif_id=...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.0;1.1179636129823016;9.31688732884248;1.565149058175228!2;1.565149058175228;0.0;2.571316309859292;7.86353463196548!3;2.124130864666368;0.0;9.875869135333632;0.0!4;3.6273454623392283;3.7391418236374676;1.453352696876988;3.1801600171463162!5;4.298123630128608;0.0;7.70187636987138;0.0!6;0.0;2.01233450336814;1.1179636129823016;8.869701883649554!7;6.919301840783771;0.0;5.080698159216228;0.0!8;0.0;7.81367273116962;3.6273454623392283;0.5589818064911508!9;0.0;0.0;12.0;0.0!10;1.565149058175228;0.0;0.0;10.434850941824772!11;0.0;2.4595199485610637;8.422516438456633;1.1179636129823016!12;0.5589818064911508;1.7887417807716839;6.024930950397936;3.6273454623392283!13;0.0;1.453352696876988;10.546647303123013;0.0 | |||
|entrez_gene_id=2034 | |entrez_gene_id=2034 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:EPAS1_si | |motif_cluster_2013_march_motif_members= /HOCOMOCO:EPAS1_si | ||
Revision as of 10:48, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known156
- db :HOCOMOCO
- Id :EPAS1_si
- name :
- score :0.664673842150266
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
