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NonredundantMotifs:151: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;2.722222222222223;1.7222222222222219;0.722222222222221;1.833333333333334!2;4.888888888888887;0.0;0.0;2.1111111111111143!3;0.8888888888888891;0.0;6.111111111111111;0.0!4;2.888888888888891;0.0;2.0000000000000018;2.1111111111111143!5;3.22222222222222;2.888888888888891;0.8888888888888891;0.0!6;0.0;5.222222222222222;0.8888888888888891;0.8888888888888891!7;4.111111111111116;0.0;0.0;2.888888888888891!8;1.3888888888888862;1.166666666666669;4.166666666666665;0.2777777777777779!9;1.166666666666669;1.3888888888888862;4.166666666666665;0.2777777777777779!10;1.277777777777781;0.2777777777777779;0.2777777777777779;5.166666666666666!11;0.0;1.111111111111113;1.7777777777777781;4.111111111111116!12;1.111111111111113;0.0;5.888888888888894;0.0!13;3.111111111111108;0.0;0.0;3.888888888888892!14;2.0000000000000018;0.0;2.0000000000000018;3.000000000000003!15;0.0;2.1111111111111143;4.888888888888887;0.0!16;0.8888888888888891;0.0;2.0000000000000018;4.111111111111116!17;3.277777777777776;0.2777777777777779;2.277777777777775;1.166666666666669
|entrez_gene_id=4306
|entrez_gene_id=4306
|motif_cluster_2013_march_motif_members= /HOCOMOCO:MCR_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:MCR_f1

Revision as of 10:48, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known151
  • db :HOCOMOCO
  • Id :MCR_f1
  • name  :
  • score :0.11283213043446465
  • External refs:
EntrezGene:4306
UniProt:4306

  • Internal refs:
EntrezGene:4306


Motif matrix
P0ACGT
12.7222222222222231.72222222222222190.7222222222222211.833333333333334
24.8888888888888870.00.02.1111111111111143
30.88888888888888910.06.1111111111111110.0
42.8888888888888910.02.00000000000000182.1111111111111143
53.222222222222222.8888888888888910.88888888888888910.0
60.05.2222222222222220.88888888888888910.8888888888888891
74.1111111111111160.00.02.888888888888891
81.38888888888888621.1666666666666694.1666666666666650.2777777777777779
91.1666666666666691.38888888888888624.1666666666666650.2777777777777779
101.2777777777777810.27777777777777790.27777777777777795.166666666666666
110.01.1111111111111131.77777777777777814.111111111111116
121.1111111111111130.05.8888888888888940.0
133.1111111111111080.00.03.888888888888892
142.00000000000000180.02.00000000000000183.000000000000003
150.02.11111111111111434.8888888888888870.0
160.88888888888888910.02.00000000000000184.111111111111116
173.2777777777777760.27777777777777792.2777777777777751.166666666666669

Sub Motif Members