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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;1;1;584;1!2;138;1;447;1!3;128;229;2;228!4;584;1;1;1!5;6;1;579;1!6;4;365;85;133!7;405;102;65;15!8;106;166;63;252!9;221;72;140;154!10;22;73;76;416!11;144;115;323;5!12;1;572;1;13!13;1;1;1;584!14;224;1;213;149!15;1;445;1;140!16;1;584;1;1!17;106;326;19;136!18;168;116;136;167!19;144;131;198;114!20;146;153;157;131
|entrez_gene_id=-
|entrez_gene_id=-
|motif_cluster_2013_march_motif_members= /HOMER:EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)
|motif_cluster_2013_march_motif_members= /HOMER:EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)

Revision as of 10:48, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known143
  • db :HOMER
  • Id :EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)
  • name  :
  • score :0.03617418044016713
  • External refs:
EntrezGene:-
UniProt:-

  • Internal refs:
EntrezGene:-


Motif matrix
POACGT
1115841
213814471
31282292228
4584111
5615791
6436585133
74051026515
810616663252
922172140154
10227376416
111441153235
121572113
13111584
142241213149
1514451140
16158411
1710632619136
18168116136167
19144131198114
20146153157131

Sub Motif Members