NonredundantMotifs:83: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=5916
|motif_cluster_2013_march_motif_members= /JASPAR:MA0159.1;RXR::RAR_DR5 /HOCOMOCO:RARA_f2~RARG_do
|name=known83
|representative_motif_d...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;4.956896551724147;2.4784482758620734;12.392241379310343;4.2025862068965605!2;5.064655172413792;3.663793103448264;11.314655172413797;3.9870689655172464!3;7.866379310344824;0.9698275862068956;11.314655172413797;3.8793103448275774!4;0.0;0.9698275862068956;18.53448275862068;4.525862068965519!5;1.0775862068965525;4.633620689655164;10.452586206896543;7.866379310344824!6;5.495689655172419;1.9396551724137938;4.956896551724147;11.637931034482756!7;2.6939655172413874;13.038793103448262;4.741379310344834;3.556034482758619!8;12.715517241379303;3.0172413793103465;7.219827586206907;1.0775862068965525!9;5.280172413793106;8.081896551724137;7.866379310344824;2.801724137931032!10;4.0948275862068915;15.301724137931044;2.6939655172413874;1.9396551724137938!11;5.603448275862064;7.543103448275866;7.004310344827592;3.8793103448275774!12;11.853448275862071;3.124999999999991;6.46551724137932;2.586206896551718!13;8.728448275862055;5.926724137931023;9.374999999999998;0.0!14;20.150862068965523;0.0;3.0172413793103465;0.8620689655172411!15;0.0;0.0;24.0301724137931;0.0!16;0.0;0.0;16.91810344827586;7.112068965517238!17;4.4181034482758506;0.0;0.0;19.61206896551725!18;2.0474137931034484;20.366379310344836;1.6163793103448276;0.0!19;22.952586206896555;1.0775862068965525;0.0;0.0!20;6.815732758620697;8.2165948275862;7.785560344827597;1.2122844827586194 | |||
|entrez_gene_id=5916 | |entrez_gene_id=5916 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0159.1;RXR::RAR_DR5 /HOCOMOCO:RARA_f2~RARG_do | |motif_cluster_2013_march_motif_members= /JASPAR:MA0159.1;RXR::RAR_DR5 /HOCOMOCO:RARA_f2~RARG_do | ||
Revision as of 10:47, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known83
- db :HOCOMOCO
- Id :RARG_do
- name :
- score :0.4986598336095242
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
