NonredundantMotifs:18: Difference between revisions
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|motif_cluster_2013_march_motif_members= /SWISSREGULON:NHLH1,2.p2~TCF4_dimer.p2~MYFfamily.p2~TFAP4.p2 /HOMER:MYOD1_Myotube-MyoD-ChIP-Seq~TCF...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NHLH1,2.p2~TCF4_dimer.p2~MYFfamily.p2~TFAP4.p2 /HOMER:MYOD1_Myotube-MyoD-ChIP-Seq~TCF12_GM12878-Tcf12-ChIP-Seq~TCF3_proBcell-E2A-ChIP-Seq | |motif_cluster_2013_march_motif_members= /JASPAR:MA0048.1;NHLH1~MA0055.1;Myf /HOCOMOCO:TFAP4_si~MYOG_f1~MYOD1_f1~HTF4_f1~HEN1_si~MYF6_f1 /SWISSREGULON:NHLH1,2.p2~TCF4_dimer.p2~MYFfamily.p2~TFAP4.p2 /HOMER:MYOD1_Myotube-MyoD-ChIP-Seq~TCF12_GM12878-Tcf12-ChIP-Seq~TCF3_proBcell-E2A-ChIP-Seq /UNIPROBE:Ascl2_primary;SCI09 | ||
|name=known18 | |name=known18 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known18
- db :SWISSREGULON
- Id :TFAP4.p2
- name :
- score :1.850544091503666
- External refs:
- Internal refs:
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Sub Motif Members
