NonredundantMotifs:7: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=3725
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NFE2L2.p2~FOSL2.p2~BACH2.p2~NFE2.p2~FOS_FOS{B,L1}_JUN{B,D}.p2 /HOMER:NFE2_K562-NF...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id=3725 | |entrez_gene_id=3725 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NFE2L2.p2~FOSL2.p2~BACH2.p2~NFE2.p2~FOS_FOS | |motif_cluster_2013_march_motif_members= /JASPAR:MA0150.1;NFE2L2~MA0099.2;AP1 /HOCOMOCO:BATF_si~MAFK_si~FOSB_f1~NF2L2_si~FOSL1_f2~BACH1_si~JUNB_f1~JUN_f1~FOSL2_f1~SMRC1_f1~NFE2_f2~JUND_f1 /SWISSREGULON:NFE2L2.p2~FOSL2.p2~BACH2.p2~NFE2.p2~FOS_FOS(B,L1)_JUN(B,D).p2 /HOMER:NFE2_K562-NFE2-ChIP-Seq~JUN_motifA;K562-cJun-ChIP-Seq /UNIPROBE:GCN4;NAR10~Jun_Fos;NAR10~Zfp691_secondary;SCI09~Jundm2_secondary;SCI09 | ||
|name=known7 | |name=known7 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known7
- db :HOCOMOCO
- Id :JUN_f1
- name :
- score :1.9588444942252214
- External refs:
- Internal refs:
| Motif matrix | |
|---|---|
|
Sub Motif Members
