NonredundantMotifs:2: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=6688 | |entrez_gene_id=6688 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:SPIB.p2~ELK1,4_GABP{A,B1}.p3~ETS1,2.p2~SPI1.p2~FEV.p2~ELF1,2,4.p2~EHF.p2 /HOCOMOCO:ELF1_f1~FEV_f1~ETV4_f1~ELK1_f1~GABPA_f1~ELK4_f1~ERG_f1~ETS1_si~ETS2_f1~ETV5_f1~ELF5_f1~ELF2_f1~ELK3_f1~GABP1+GABP2_f1~FLI1_f1~EHF_si~SPIB_f1~ELF3_f1~SPI1_si~ETV7_si /UNIPROBE:Elk4;EMBO10~Elf4;EMBO10~Ets1;EMBO10~Etv4;EMBO10~Spdef_primary;SCI09~Spic;EMBO10~Fli1;EMBO10~Elf3_primary;SCI09~Ehf;EMBO10~Etv6;EMBO10~Ehf_primary;SCI09~Gm4881;EMBO10~Gabpa_primary;SCI09~Etv1;EMBO10~Elf2;EMBO10~Elf5;EMBO10~Sfpi1;EMBO10~Erg;EMBO10~Sfpi1_primary;SCI09~Etv5;EMBO10~Elk3;EMBO10~Gm5454;EMBO10~Elf3;EMBO10~Elk1;EMBO10~Spdef;EMBO10~Gabpa;EMBO10~Etv3;EMBO10~Sfpi1_secondary; | |motif_cluster_2013_march_motif_members= /SWISSREGULON:SPIB.p2~ELK1,4_GABP{A,B1}.p3~ETS1,2.p2~SPI1.p2~FEV.p2~ELF1,2,4.p2~EHF.p2 /HOMER:FLI1_SK_N_MC-EWS;FLI1-ChIP-Seq~ETV1_GIST48-ETV1-ChIP-Seq~SPI1_ThioMac-PU.1-ChIP-Seq~ERG_VCaP-ERG-ChIP-Seq~SPDEF_VCaP-SPDEF-ChIP-Seq~ERG_CADO_ES1-EWS;ERG-ChIP-Seq~GABPA_Jurkat-GABPa-ChIP-Seq~ETS1_Jurkat-ETS1-ChIP-Seq~ELF1_Jurkat-ELF1-ChIP-Seq /JASPAR:MA0081.1;SPIB~MA0098.1;ETS1~MA0036.1;GATA2~MA0076.1;ELK4~MA0062.2;GABPA~MA0080.2;SPI1~MA0136.1;ELF5~MA0028.1;ELK1~MA0156.1;FEV /HOCOMOCO:ELF1_f1~FEV_f1~ETV4_f1~ELK1_f1~GABPA_f1~ELK4_f1~ERG_f1~ETS1_si~ETS2_f1~ETV5_f1~ELF5_f1~ELF2_f1~ELK3_f1~GABP1+GABP2_f1~FLI1_f1~EHF_si~SPIB_f1~ELF3_f1~SPI1_si~ETV7_si /UNIPROBE:Elk4;EMBO10~Elf4;EMBO10~Ets1;EMBO10~Etv4;EMBO10~Spdef_primary;SCI09~Spic;EMBO10~Fli1;EMBO10~Elf3_primary;SCI09~Ehf;EMBO10~Etv6;EMBO10~Ehf_primary;SCI09~Gm4881;EMBO10~Gabpa_primary;SCI09~Etv1;EMBO10~Elf2;EMBO10~Elf5;EMBO10~Sfpi1;EMBO10~Erg;EMBO10~Sfpi1_primary;SCI09~Etv5;EMBO10~Elk3;EMBO10~Gm5454;EMBO10~Elf3;EMBO10~Elk1;EMBO10~Spdef;EMBO10~Gabpa;EMBO10~Etv3;EMBO10~Sfpi1_secondary;SCI09 | ||
|name=known2 | |name=known2 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
Revision as of 14:07, 30 April 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known2
- db :JASPAR
- Id :MA0080.2
- name :SPI1
- score :2.115836116731318
- External refs:
- Internal refs:
| Motif matrix | |
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Sub Motif Members
