NonredundantMotifs:2: Difference between revisions
From FANTOM5_SSTAR
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|motif_cluster_2013_march_subclusters= /JASPAR:MA0081.1;SPIB,MA0098.1;ETS1,MA0036.1;GATA2,MA0076.1;ELK4,MA0062.2;GABPA,MA0080.2;SPI1,MA0136.1;ELF5,MA...") |
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{{ | {{Known_motif | ||
|motif_cluster_2013_march_subclusters= /JASPAR:MA0081.1;SPIB,MA0098.1;ETS1,MA0036.1;GATA2,MA0076.1;ELK4,MA0062.2;GABPA,MA0080.2;SPI1,MA0136.1;ELF5,MA0028.1;ELK1,MA0156.1;FEV /UNIPROBE:Elk4;EMBO10,Elf4;EMBO10,Ets1;EMBO10,Etv4;EMBO10,Spdef_primary;SCI09,Spic;EMBO10,Fli1;EMBO10,Elf3_primary;SCI09,Ehf;EMBO10,Etv6;EMBO10,Ehf_primary;SCI09,Gm4881;EMBO10,Gabpa_primary;SCI09,Etv1;EMBO10,Elf2;EMBO10,Elf5;EMBO10,Sfpi1;EMBO10,Erg;EMBO10,Sfpi1_primary;SCI09,Etv5;EMBO10,Elk3;EMBO10,Gm5454;EMBO10,Elf3;EMBO10,Elk1;EMBO10,Spdef;EMBO10,Gabpa;EMBO10,Etv3;EMBO10,Sfpi1_secondary;SCI09 /SWISSREGULON:SPIB.p2,ELK1,4_GABP{A,B1}.p3,ETS1,2.p2,SPI1.p2,FEV.p2,ELF1,2,4.p2,EHF.p2 /HOMER:FLI1_SK_N_MC-EWS;FLI1-ChIP-Seq,ETV1_GIST48-ETV1-ChIP-Seq,SPI1_ThioMac-PU.1-ChIP-Seq,ERG_VCaP-ERG-ChIP-Seq,SPDEF_VCaP-SPDEF-ChIP-Seq,ERG_CADO_ES1-EWS;ERG-ChIP-Seq,GABPA_Jurkat-GABPa-ChIP-Seq,ETS1_Jurkat-ETS1-ChIP-Seq,ELF1_Jurkat-ELF1-ChIP-Seq /HOCOMOCO:ELF1_f1,FEV_f1,ETV4_f1,ELK1_f1,GABPA_f1,ELK4_f1,ERG_f1,ETS1_si,ETS2_f1,ETV5_f1,ELF5_f1,ELF2_f1,ELK3_f1,GABP1+GABP2_f1,FLI1_f1,EHF_si,SPIB_f1,ELF3_f1,SPI1_si,ETV7_si | |motif_cluster_2013_march_subclusters= /JASPAR:MA0081.1;SPIB,MA0098.1;ETS1,MA0036.1;GATA2,MA0076.1;ELK4,MA0062.2;GABPA,MA0080.2;SPI1,MA0136.1;ELF5,MA0028.1;ELK1,MA0156.1;FEV /UNIPROBE:Elk4;EMBO10,Elf4;EMBO10,Ets1;EMBO10,Etv4;EMBO10,Spdef_primary;SCI09,Spic;EMBO10,Fli1;EMBO10,Elf3_primary;SCI09,Ehf;EMBO10,Etv6;EMBO10,Ehf_primary;SCI09,Gm4881;EMBO10,Gabpa_primary;SCI09,Etv1;EMBO10,Elf2;EMBO10,Elf5;EMBO10,Sfpi1;EMBO10,Erg;EMBO10,Sfpi1_primary;SCI09,Etv5;EMBO10,Elk3;EMBO10,Gm5454;EMBO10,Elf3;EMBO10,Elk1;EMBO10,Spdef;EMBO10,Gabpa;EMBO10,Etv3;EMBO10,Sfpi1_secondary;SCI09 /SWISSREGULON:SPIB.p2,ELK1,4_GABP{A,B1}.p3,ETS1,2.p2,SPI1.p2,FEV.p2,ELF1,2,4.p2,EHF.p2 /HOMER:FLI1_SK_N_MC-EWS;FLI1-ChIP-Seq,ETV1_GIST48-ETV1-ChIP-Seq,SPI1_ThioMac-PU.1-ChIP-Seq,ERG_VCaP-ERG-ChIP-Seq,SPDEF_VCaP-SPDEF-ChIP-Seq,ERG_CADO_ES1-EWS;ERG-ChIP-Seq,GABPA_Jurkat-GABPa-ChIP-Seq,ETS1_Jurkat-ETS1-ChIP-Seq,ELF1_Jurkat-ELF1-ChIP-Seq /HOCOMOCO:ELF1_f1,FEV_f1,ETV4_f1,ELK1_f1,GABPA_f1,ELK4_f1,ERG_f1,ETS1_si,ETS2_f1,ETV5_f1,ELF5_f1,ELF2_f1,ELK3_f1,GABP1+GABP2_f1,FLI1_f1,EHF_si,SPIB_f1,ELF3_f1,SPI1_si,ETV7_si | ||
|name=known2 | |name=known2 | ||
Revision as of 10:58, 25 April 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known2
- db :JASPAR
- Id :MA0080.2
- name :SPI1
- score :2.115836116731318
- External refs:
- Internal refs:
- [[EntrezGene:{{{entrez_gene_id}}}]]
| Motif matrix | |
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Sub Motif Members
