Personal tools

UBERON:0000170: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000170
|alt_id=
|name=pair of lungs
|anatomical_img_id=FMA:68877
|namespace=
|def=
|xref=BTO:0000763;;EFO:0000934;;FMA:68877;;ncithesaurus:Lung;;OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
|is_a=UBERON:0000477
|synonym="lungs" EXACT [];;"lungs pair" EXACT [];;"pulmones" EXACT [FMA:68877, FMA:TA];;"set of lungs" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000170
|is_a=UBERON:0000477
|is_obsolete=
|located_in=
|located_in=
|name=pair of lungs
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="lungs" EXACT [];;"lungs pair" EXACT [];;"pulmones" EXACT [FMA:68877, FMA:TA];;"set of lungs" EXACT []
|union_of=
|xref=BTO:0000763;;EFO:0000934;;FMA:68877;;ncithesaurus:Lung;;OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
}}
}}

Revision as of 18:35, 29 November 2012

Name:pair of lungs
Xrefs:
links:

BTO:0000763
EFO:0000934
FMA:68877
ncithesaurus:Lung

OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
Synonyms: "lungs" EXACT []
"lungs pair" EXACT []
"pulmones" EXACT [FMA:68877, FMA:TA]
"set of lungs" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster)



Children

part of:FF:0000326 (lung - fetal week 6),UBERON:0002048 (lung),FF:0010019 (human lung - adult sample),FF:0010068 (human lung - fetal sample),FF:0011394 (mouse lung- neonate N00 sample),FF:0011402 (mouse lung- neonate N06 sample),FF:0011408 (mouse lung- neonate N07 sample),FF:0011415 (mouse lung- neonate N10 sample),FF:0011488 (mouse lung- neonate N25 sample),FF:0011489 (mouse lung- neonate N30 sample),FF:0011513 (mouse lung- embryo E18 sample),FF:1287-20I6 (lung, embryo E18),FF:1359-25C7 (lung, neonate N25),FF:1394-42H2 (lung, neonate N30),FF:640-42C6 (lung, neonate N00),FF:683-20E5 (lung, neonate N06),FF:715-19A3 (lung, neonate N07),FF:750-23E6 (lung, neonate N10)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000170 (pair of lungs), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.5e-81FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_be7f73d6c5429ff9d6d6381e8d436aebp4@Tbx4
3.5e-81FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_be7f73d6c5429ff9d6d6381e8d436aebp4@Tbx4
1.94e-76FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_f2a0a320484506841bcde5d5ad5de386p1@ENSMUST00000134305
1.94e-76FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_f2a0a320484506841bcde5d5ad5de386p1@ENSMUST00000134305
6.06e-75FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_cb0b14d5b04772122f6d2cd8533508a6p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
6.06e-75FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_cb0b14d5b04772122f6d2cd8533508a6p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
7.98e-75FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_91057ed37f9de703df50562a097f8dcdp6@Tbx4
7.98e-75FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_91057ed37f9de703df50562a097f8dcdp6@Tbx4
3.64e-74FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr4:138812977..138812992, +
3.64e-74FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr12:57598716..57598720, -
3.64e-74FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr12:57636003..57636017, -
3.64e-74FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr4:138812977..138812992, +
3.64e-74FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr8:94878479..94878503, -
3.64e-74FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr11:59457994..59457997, -
3.64e-74FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr12:57598716..57598720, -
3.64e-74FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr11:59457994..59457997, -
3.64e-74FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr8:94878479..94878503, -
3.64e-74FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_18bb570eb7dd4d2736bc4099f13f0f6bp@chr12:57636003..57636017, -
3.06e-70FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_bf4423f68ae685d7175e8e25f274ad1ap8@Nkx2-1
3.06e-70FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_bf4423f68ae685d7175e8e25f274ad1ap8@Nkx2-1
3.48e-70FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_1e07669f9d78cf8a57e07a3622838551p2@E030019B13Rik
3.48e-70FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_1e07669f9d78cf8a57e07a3622838551p2@E030019B13Rik
3.96e-70FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_0be009b357d91b720fd52e4359b1cc38p10@Nebl
3.96e-70FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_0be009b357d91b720fd52e4359b1cc38p10@Nebl
4.5e-70FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_870fa8e877ec5a15066391334e09d8c3p9@Nkx2-1
4.5e-70FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_870fa8e877ec5a15066391334e09d8c3p9@Nkx2-1
9.69e-69FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_7cf1df3b520b3386c90417e1204f54c9p@chr12:57598537..57598547, -
9.69e-69FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_7cf1df3b520b3386c90417e1204f54c9p@chr12:57598537..57598547, -
9.69e-69FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_7cf1df3b520b3386c90417e1204f54c9p3@E030019B13Rik
9.69e-69FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_7cf1df3b520b3386c90417e1204f54c9p3@E030019B13Rik
9.69e-69FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_7cf1df3b520b3386c90417e1204f54c9p3@Trpm6
9.69e-69FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_7cf1df3b520b3386c90417e1204f54c9p3@Trpm6
1.11e-68FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_9a160305848fbcd56a91a78f972d9e14p@chr14:115241755..115241762, -
1.11e-68FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_9a160305848fbcd56a91a78f972d9e14p@chr14:115241755..115241762, -
1.27e-68FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_4878698fea4c34fb6d00999d87fa0990p@chr4:138812999..138813015, +
1.27e-68FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_4878698fea4c34fb6d00999d87fa0990p@chr4:138812999..138813015, +
4.47e-68FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_bfb0c3966167fd30f083960b820bf880p@chr5:120282691..120282701, +
4.47e-68FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_bfb0c3966167fd30f083960b820bf880p@chr5:120282691..120282701, +
5.44e-68FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_be6c286d02bb262c758e5f8a8e01c65dp@chr14:70921265..70921285, -
5.44e-68FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_be6c286d02bb262c758e5f8a8e01c65dp4@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_be6c286d02bb262c758e5f8a8e01c65dp@chr14:70921265..70921285, -
5.44e-68FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_be6c286d02bb262c758e5f8a8e01c65dp4@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_be6c286d02bb262c758e5f8a8e01c65dp3@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_be6c286d02bb262c758e5f8a8e01c65dp@chr2:66524237..66524246, -
5.44e-68FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_be6c286d02bb262c758e5f8a8e01c65dp@chr2:66524237..66524246, -
5.44e-68FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_be6c286d02bb262c758e5f8a8e01c65dp@chr14:70922576..70922589, -
5.44e-68FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_be6c286d02bb262c758e5f8a8e01c65dp@chr1:184610062..184610074, +
5.44e-68FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_be6c286d02bb262c758e5f8a8e01c65dp3@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_be6c286d02bb262c758e5f8a8e01c65dp@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_be6c286d02bb262c758e5f8a8e01c65dp@chr1:184610062..184610074, +
5.08e-66FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_ed6913dc1613962ae4f745fcb30abf6dp4@E030019B13Rik
5.08e-66FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_ed6913dc1613962ae4f745fcb30abf6dp4@E030019B13Rik
4.92e-64FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_839e6f00fd848495859cc30a5b163855p@chr12:57623172..57623185, -
4.92e-64FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_839e6f00fd848495859cc30a5b163855p@chr14:70922007..70922052, +
4.92e-64FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_839e6f00fd848495859cc30a5b163855p@chr14:70922007..70922052, +
4.92e-64FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_839e6f00fd848495859cc30a5b163855p@chr12:57623172..57623185, -
5.59e-64FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_fb114c929a522039e6e8290d8225828ap@chr5:28785436..28785450, -
5.59e-64FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_fb114c929a522039e6e8290d8225828ap@chr5:28785436..28785450, -
6.35e-64FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_76d45f3bdfb55d1015a2bb8a459204f6p@chr14:70922459..70922482, -
6.35e-64FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_76d45f3bdfb55d1015a2bb8a459204f6p@chr14:70922459..70922482, -
2.55e-63FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_7c441e12ad2341a01e3372f3fb57f2edp4@Etv5
2.55e-63FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_7c441e12ad2341a01e3372f3fb57f2edp4@Etv5
1.43e-62FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_c72420f5be9dea2072aa23e222d97ba7p4@Lamp3
1.43e-62FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_c72420f5be9dea2072aa23e222d97ba7p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_c72420f5be9dea2072aa23e222d97ba7p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_c72420f5be9dea2072aa23e222d97ba7p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_c72420f5be9dea2072aa23e222d97ba7p@chr12:57376690..57376716, -
1.43e-62FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_c72420f5be9dea2072aa23e222d97ba7p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_c72420f5be9dea2072aa23e222d97ba7p4@Lamp3
1.43e-62FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_c72420f5be9dea2072aa23e222d97ba7p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_c72420f5be9dea2072aa23e222d97ba7p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_c72420f5be9dea2072aa23e222d97ba7p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_c72420f5be9dea2072aa23e222d97ba7p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_c72420f5be9dea2072aa23e222d97ba7p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_c72420f5be9dea2072aa23e222d97ba7p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_c72420f5be9dea2072aa23e222d97ba7p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_c72420f5be9dea2072aa23e222d97ba7p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_c72420f5be9dea2072aa23e222d97ba7p@chr12:57376690..57376716, -
1.63e-62FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_d4748b83c49912f2b8ce296f9b07922ap@chr6:72264609..72264653, -
1.63e-62FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_d4748b83c49912f2b8ce296f9b07922ap@chr6:72264609..72264653, -
1.87e-62FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_094d9ab85ef8db71261878c56437658dp@chr6:129378567..129378573, -
1.87e-62FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_094d9ab85ef8db71261878c56437658dp@chr6:129378567..129378573, -
1.91e-62FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_a564f9435e04095bed4a14afc474bdb5p16@Pde5a
1.91e-62FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_a564f9435e04095bed4a14afc474bdb5p16@Pde5a
3.02e-62FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_0a600dc9b8884f410e29b14a58241798p7@Nkx2-1
3.02e-62FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_0a600dc9b8884f410e29b14a58241798p7@Nkx2-1
5.06e-62FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_077604bb1a585e0d470af748402517e4p@chr12:57636936..57636953, -
5.06e-62FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_077604bb1a585e0d470af748402517e4p@chr12:57636936..57636953, -
7.58e-62FFCP PHASE2:Mm9::chr2:126950686..126950702,-#_9a8bbe7948d4e79e8a33a4807419f767p@chr2:126950686..126950702, -
7.58e-62FFCP PHASE2:Mm9::chr9:110959404..110959419,-#_9a8bbe7948d4e79e8a33a4807419f767p9@Ccrl2
7.58e-62FFCP PHASE1:Mm9::chr17:67043399..67043410,-#_9a8bbe7948d4e79e8a33a4807419f767p9@Ptprm
7.58e-62FFCP PHASE1:Mm9::chr2:126950686..126950702,-#_9a8bbe7948d4e79e8a33a4807419f767p@chr2:126950686..126950702, -
7.58e-62FFCP PHASE1:Mm9::chr6:72260761..72260774,-#_9a8bbe7948d4e79e8a33a4807419f767p@chr6:72260761..72260774, -
7.58e-62FFCP PHASE1:Mm9::chr14:41949922..41949935,+#_9a8bbe7948d4e79e8a33a4807419f767p@chr14:41949922..41949935, +
7.58e-62FFCP PHASE2:Mm9::chr6:72259749..72259765,+#_9a8bbe7948d4e79e8a33a4807419f767p@chr6:72259749..72259765, +
7.58e-62FFCP PHASE1:Mm9::chr12:57630433..57630438,-#_9a8bbe7948d4e79e8a33a4807419f767p6@E030019B13Rik
7.58e-62FFCP PHASE2:Mm9::chr14:41949922..41949935,+#_9a8bbe7948d4e79e8a33a4807419f767p@chr14:41949922..41949935, +
7.58e-62FFCP PHASE1:Mm9::chr14:70931508..70931519,+#_9a8bbe7948d4e79e8a33a4807419f767p@chr14:70931508..70931519, +
7.58e-62FFCP PHASE2:Mm9::chr17:67043399..67043410,-#_9a8bbe7948d4e79e8a33a4807419f767p9@Ptprm
7.58e-62FFCP PHASE2:Mm9::chr2:152591095..152591110,-#_9a8bbe7948d4e79e8a33a4807419f767p@chr2:152591095..152591110, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000170&oldid=2565013"