Coexpression cluster:C2398: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=BCLAF1#9774;4:21.6526476101218:4.54636978835329e-06:0.000141567774098339!CCNT2#905;4:6.33620157696263:0.000620310058721564:0.00511847690786296!CTCF#10664;4:5.36025637307503:0.00121114538164362:0.00816913023207687!CTCFL#140690;4:19.7464743589744:6.5732084880439e-06:0.000192782735546986!E2F1#1869;4:4.90738921487932:0.00172402235736179:0.0106453335095488!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00996475197057434!EBF1#1879;4:8.906466846569:0.0001588790747201:0.00199509098048485!ELF1#1997;4:4.25809795880754:0.00304152556578124:0.0160796703905151!GABPB1#2553;4:7.06768383618217:0.000400687686442317:0.00390149368677504!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.0185888461420264!HMGN3#9324;4:8.17854772335059:0.000223457028444047:0.00248035164137186!NRF1#4899;4:12.2102794477109:4.49717228915276e-05:0.000793378676869637!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00443674694372509!RAD21#5885;4:10.3550338954563:8.6948481184721e-05:0.00129319459220323!SMARCB1#6598;4:18.2527157811574:9.00423392720929e-06:0.00024125017627599!SMC3#9126;4:15.0449328449328:1.95092670935632e-05:0.000437707485710988!SRF#6722;4:13.7971782621678:2.75840773062708e-05:0.00058387787794682!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0321937405704633!TAF7#6879;4:11.4330694049239:5.85061525419808e-05:0.000968355636344205!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0243967892470455!TCF12#6938;4:10.6344649021864:7.8163066689251e-05:0.00119995186270156!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0106763355110165!ZBTB7A#51341;4:7.3519093078759:0.00034222354001599:0.00346298656096599!ZNF143#7702;4:13.5008765522279:3.00867915035614e-05:0.000620504426903722!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00248665881236376!ZNF274#10782;4:1421.74615384615:2.33614176794641e-13:3.50049225398214e-11 | |tf_chipseq_enrich=BCLAF1#9774;4:21.6526476101218:4.54636978835329e-06:0.000141567774098339!CCNT2#905;4:6.33620157696263:0.000620310058721564:0.00511847690786296!CTCF#10664;4:5.36025637307503:0.00121114538164362:0.00816913023207687!CTCFL#140690;4:19.7464743589744:6.5732084880439e-06:0.000192782735546986!E2F1#1869;4:4.90738921487932:0.00172402235736179:0.0106453335095488!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00996475197057434!EBF1#1879;4:8.906466846569:0.0001588790747201:0.00199509098048485!ELF1#1997;4:4.25809795880754:0.00304152556578124:0.0160796703905151!GABPB1#2553;4:7.06768383618217:0.000400687686442317:0.00390149368677504!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.0185888461420264!HMGN3#9324;4:8.17854772335059:0.000223457028444047:0.00248035164137186!NRF1#4899;4:12.2102794477109:4.49717228915276e-05:0.000793378676869637!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00443674694372509!RAD21#5885;4:10.3550338954563:8.6948481184721e-05:0.00129319459220323!SMARCB1#6598;4:18.2527157811574:9.00423392720929e-06:0.00024125017627599!SMC3#9126;4:15.0449328449328:1.95092670935632e-05:0.000437707485710988!SRF#6722;4:13.7971782621678:2.75840773062708e-05:0.00058387787794682!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0321937405704633!TAF7#6879;4:11.4330694049239:5.85061525419808e-05:0.000968355636344205!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0243967892470455!TCF12#6938;4:10.6344649021864:7.8163066689251e-05:0.00119995186270156!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0106763355110165!ZBTB7A#51341;4:7.3519093078759:0.00034222354001599:0.00346298656096599!ZNF143#7702;4:13.5008765522279:3.00867915035614e-05:0.000620504426903722!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00248665881236376!ZNF274#10782;4:1421.74615384615:2.33614176794641e-13:3.50049225398214e-11 | ||
|tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,5.55306e-06,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.0412226,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.0580589,0.0848546,0.268505,0.0384285,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.327332,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.00373706,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.013158,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.00594786,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.00284082,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.690367,0.810881,0.869559,0.73998,0.668426,0.901171,9.02002e-08,0.420045,0.00044921,0.332539,0.186966,4.81166e-05,0.389374,0.594055,0.414547,0.0308146,0.413223,0.271656,0.720642,0.34505,0.369161,0.500422,0.49089,0.112403,0.702495,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.170724,0.467825,0.0102566,0.164225,0.0806606,0.624969,0.460819,0.511459,0.221488,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.0683688,0.127626,0.359128,0.395864,0.318966,0.0782875,0.0463511,0.0292801,0.512763,0.369971,0.578349,0.537928,0.129952,0.683088,0.714007,0.235444,0.804772,0.402752,0.00287093,0.349116,0.302142,0.239545,0.11111,0.640367,0.343881,0.0110284,0.606382,0.617741,0.00342662,0.316925,0.356561,0.210197,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.301365,0.00127963,0.0353617,0.187096,0.000783601,0.656755,0.188468,0.280307,0.393583,0.794849,0.0596868,0.0984075,0.293026,0.753513,5.46097e-09,0.23849,0.372182,0.429205,0.214741,0.365653,0.41035,0.784024,0.0710032,0.00740524,0.525923,0.000449587,0.421082,0.25441,0.202782,0.672876,0.000943563,0.00211663,0.517001,0.252778,0.00544933,0.419676,0.188259,0.189182,0.477589,0.46699,0.00872579,0.0505495,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.0224473,0.370995,0.360161,0.429696,0.386216,0.385297,0.706685,5.4074e-05,0.0181818,0.360203,0.333725,0.0225184,0.289666,0.500627,0.0365674,0.452694,0.565545,0.845507,0.265037,0.629795,0.754776,0.53531,0.341771,0.106541,0.290547,0.00110716,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.049262,0.244339,0.117049,0.0786167,0.629381,0.0109535,0.433821,0.64428,0.436806,0.576549,0.00550983,0.744662,0.000454612,0.0922563,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,1.72869e-05,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.0851202,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.0403091,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.0438854,0.000243828,0.251882,0.172263,0.0323461,0.0637178,0.036377,0.0334797,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.0103095,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.0104244,8.62635e-08,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.000447146,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.00648069,0.159873,0.142462,0.143935,0.332403,0.0379537,1.93544e-07,0.0188872,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.00489168,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.103852,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.458838,0.189107,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.0360207,0.758305,0.278645,0.0769795,0.155708,0.0336707,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.0464703,3.10129e-05,0.265324,0.043404,0.141699,0.0887743,2.04677e-05,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.00221894,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.0345492,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.0199582,0.0153391,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.0170013,0.291976,0.320355,0.0763252,0.15547,0.110256,0.0173373,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.00894967,0.327768,0.135777,0.147842,0.0339286,0.217363,0.000308453,0.690952,0.21618,0.243266,0.00594269,0.0310605,0.20272,0.392453,0.00303153,0.0780061,0.315336,0.230477,0.043419,0.295555,0.000772604,0.0103352,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.0368787,0.459091,0.189333,0.502211,0.296013,0.649813,0.537932,0.459994,0.523209,0.0465928,0.25423,0.00505798,0.45013,0.0334811,0.472542,0.0302459,0.399934,0.529642,0.0301009,0.483077,0.590496,0.23695,0.541914,0.627201,0.938109,0.00709718,0.290703,0.622694,0.722684,0.478691,0.360199,0.241059,0.657141,0.519564,0.365494,0.212703,0.56318,0.0110532,0.00628541,0.0119013,0.00241053,0.569409,0.328518,0.545608,0.310552,0.324103,0.483764,0.528161,0.784052,0.209437,0.843495,0.161672,0.0141441,0.882403,0.464001,0.336867,0.579004,0.000276195,0.113944,0.137711,0.000276758,0.257956,0.264245,0.379063,0.0602936,0.522925,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.667777,0.39549,0.234254,0.357409,0.599068,0.721266,0.50338,0.620526,0.404625,4.23095e-09,0.106633,0.00931622,0.479581,0.62689,0.00041289,0.00068395,0.284496,0.512545,0.512178,0.563206,0.00233197,0.684899,0.263302,0.00919591,0.180735,0.00434967,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.102502,0.463987,0.627953,0.00578014,0.454761,0.639483,0.142363,0.00339209,0.301581,0.261657,0.346776,0.131322,0.545655,0.438176,0.349112,0.000509621,0.00159055,0.307816,0.461541,0.386339,0.382854,0.598787,0.139139,0.611661,0.319747,0.475047,0.557967,5.56654e-05,0.282281,0.612712,0.2536,0.0333324,0.0103145,0.70712,0.387134,0.050476,0.358813,0.303004,0.574252,0.493455,0.346636,0.125876,0.348802,0.476541,0.215342,0.119749,0.42505,0.254628,0.713293,0.479347,0.416962,0.0191073,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.133173,0.325254,0.266651,0.546295,0.231754,0.249415,0.283107,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.000254771,0.0432189,0.122439,0.0138731,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.000460864,0.00183466,0.00536668,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,3.08343e-05,0.201057,0.15696,0.00039939,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.0874139,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,2.66678e-05,0.287598,0.313858,0.223773,0.25788,0.181895,0.00336176,0.30702,0.202977,0.170837,0.327002,0.28543,0.00220735,0.228479,0.127111,0.259989,0.0140513,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.0805224,0.362662,0.00277084,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.0641033,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.321965,0.264707,0.450113 | |tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,5.55306e-06,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.0412226,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.0580589,0.0848546,0.268505,0.0384285,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.327332,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.00373706,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.013158,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.00594786,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.00284082,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.690367,0.810881,0.869559,0.73998,0.668426,0.901171,9.02002e-08,0.420045,0.00044921,0.332539,0.186966,4.81166e-05,0.389374,0.594055,0.414547,0.0308146,0.413223,0.271656,0.720642,0.34505,0.369161,0.500422,0.49089,0.112403,0.702495,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.170724,0.467825,0.0102566,0.164225,0.0806606,0.624969,0.460819,0.511459,0.221488,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.0683688,0.127626,0.359128,0.395864,0.318966,0.0782875,0.0463511,0.0292801,0.512763,0.369971,0.578349,0.537928,0.129952,0.683088,0.714007,0.235444,0.804772,0.402752,0.00287093,0.349116,0.302142,0.239545,0.11111,0.640367,0.343881,0.0110284,0.606382,0.617741,0.00342662,0.316925,0.356561,0.210197,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.301365,0.00127963,0.0353617,0.187096,0.000783601,0.656755,0.188468,0.280307,0.393583,0.794849,0.0596868,0.0984075,0.293026,0.753513,5.46097e-09,0.23849,0.372182,0.429205,0.214741,0.365653,0.41035,0.784024,0.0710032,0.00740524,0.525923,0.000449587,0.421082,0.25441,0.202782,0.672876,0.000943563,0.00211663,0.517001,0.252778,0.00544933,0.419676,0.188259,0.189182,0.477589,0.46699,0.00872579,0.0505495,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.0224473,0.370995,0.360161,0.429696,0.386216,0.385297,0.706685,5.4074e-05,0.0181818,0.360203,0.333725,0.0225184,0.289666,0.500627,0.0365674,0.452694,0.565545,0.845507,0.265037,0.629795,0.754776,0.53531,0.341771,0.106541,0.290547,0.00110716,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.049262,0.244339,0.117049,0.0786167,0.629381,0.0109535,0.433821,0.64428,0.436806,0.576549,0.00550983,0.744662,0.000454612,0.0922563,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,1.72869e-05,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.0851202,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.0403091,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.0438854,0.000243828,0.251882,0.172263,0.0323461,0.0637178,0.036377,0.0334797,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.0103095,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.0104244,8.62635e-08,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.000447146,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.00648069,0.159873,0.142462,0.143935,0.332403,0.0379537,1.93544e-07,0.0188872,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.00489168,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.103852,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.458838,0.189107,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.0360207,0.758305,0.278645,0.0769795,0.155708,0.0336707,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.0464703,3.10129e-05,0.265324,0.043404,0.141699,0.0887743,2.04677e-05,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.00221894,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.0345492,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.0199582,0.0153391,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.0170013,0.291976,0.320355,0.0763252,0.15547,0.110256,0.0173373,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.00894967,0.327768,0.135777,0.147842,0.0339286,0.217363,0.000308453,0.690952,0.21618,0.243266,0.00594269,0.0310605,0.20272,0.392453,0.00303153,0.0780061,0.315336,0.230477,0.043419,0.295555,0.000772604,0.0103352,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.0368787,0.459091,0.189333,0.502211,0.296013,0.649813,0.537932,0.459994,0.523209,0.0465928,0.25423,0.00505798,0.45013,0.0334811,0.472542,0.0302459,0.399934,0.529642,0.0301009,0.483077,0.590496,0.23695,0.541914,0.627201,0.938109,0.00709718,0.290703,0.622694,0.722684,0.478691,0.360199,0.241059,0.657141,0.519564,0.365494,0.212703,0.56318,0.0110532,0.00628541,0.0119013,0.00241053,0.569409,0.328518,0.545608,0.310552,0.324103,0.483764,0.528161,0.784052,0.209437,0.843495,0.161672,0.0141441,0.882403,0.464001,0.336867,0.579004,0.000276195,0.113944,0.137711,0.000276758,0.257956,0.264245,0.379063,0.0602936,0.522925,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.667777,0.39549,0.234254,0.357409,0.599068,0.721266,0.50338,0.620526,0.404625,4.23095e-09,0.106633,0.00931622,0.479581,0.62689,0.00041289,0.00068395,0.284496,0.512545,0.512178,0.563206,0.00233197,0.684899,0.263302,0.00919591,0.180735,0.00434967,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.102502,0.463987,0.627953,0.00578014,0.454761,0.639483,0.142363,0.00339209,0.301581,0.261657,0.346776,0.131322,0.545655,0.438176,0.349112,0.000509621,0.00159055,0.307816,0.461541,0.386339,0.382854,0.598787,0.139139,0.611661,0.319747,0.475047,0.557967,5.56654e-05,0.282281,0.612712,0.2536,0.0333324,0.0103145,0.70712,0.387134,0.050476,0.358813,0.303004,0.574252,0.493455,0.346636,0.125876,0.348802,0.476541,0.215342,0.119749,0.42505,0.254628,0.713293,0.479347,0.416962,0.0191073,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.133173,0.325254,0.266651,0.546295,0.231754,0.249415,0.283107,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.000254771,0.0432189,0.122439,0.0138731,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.000460864,0.00183466,0.00536668,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,3.08343e-05,0.201057,0.15696,0.00039939,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.0874139,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,2.66678e-05,0.287598,0.313858,0.223773,0.25788,0.181895,0.00336176,0.30702,0.202977,0.170837,0.327002,0.28543,0.00220735,0.228479,0.127111,0.259989,0.0140513,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.0805224,0.362662,0.00277084,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.0641033,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.321965,0.264707,0.450113 | ||
|tfbs_overrepresentation_for_novel_motifs=1.44014,1.54039,1.42265,0.741427,0.534346,0.739643,0.821651,0.395818,0.392841,2.07992,0.706765,0.867962,1.62243,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.635753,0.581762,0.975621,0.731221,0.528529,0.632849,0.892087,0.316693,0.728867,0.537869,1.46495,0.682839,1.09415,0.433165,0.911389,0.49475,0.0842336,1.23038,0.740899,0.463978,0.371755,0.493145,1.59701,0.539378,0.53106,0.314427,1.49501,0.822818,0.694903,0.173425,2.28614,0.90714,0.83543,1.99838,1.17354,1.33024,0.812467,0.54284,1.82985,0.806003,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,2.64981,1.83352,0.248021,1.32819,5.3994,0.859396,0.305238,1.00941,1.08,0.62601,0.95118,1.02594,0.844168,0.399165,1.27559,3.76398,1.18341,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,1.15724,0.354969,1.15558,0.939507,0.272395,0.465545,1.1057,1.14983,1.05974,0.979006,1.67377,1.04326,0.805616,0.632569,0.516141,0.594299,1.14697,2.40834,0.717043,1.46636,0.489254,11.6029,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,0.283547,2.73245,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,1.95303,0.66252,1.00204,1.24902,0.383416,0.824835,1.65997,0.917558,0.518428,3.77839,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,7.32654 | |||
}} | }} | ||
Revision as of 15:28, 26 November 2012
Full id: C2398_brain_occipital_parietal_temporal_cerebellum_globus_optic
Phase1 CAGE Peaks
| Hg19::chr17:27507377..27507391,- | p4@MYO18A |
| Hg19::chr17:27507395..27507449,- | p1@MYO18A |
| Hg19::chr17:27507450..27507461,- | p5@MYO18A |
| Hg19::chr17:27507464..27507475,- | p6@MYO18A |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 4.54e-13 | 253 |
| ectodermal cell | 7.34e-07 | 72 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| BCLAF1#9774 | 4 | 21.6526476101218 | 4.54636978835329e-06 | 0.000141567774098339 |
| CCNT2#905 | 4 | 6.33620157696263 | 0.000620310058721564 | 0.00511847690786296 |
| CTCF#10664 | 4 | 5.36025637307503 | 0.00121114538164362 | 0.00816913023207687 |
| CTCFL#140690 | 4 | 19.7464743589744 | 6.5732084880439e-06 | 0.000192782735546986 |
| E2F1#1869 | 4 | 4.90738921487932 | 0.00172402235736179 | 0.0106453335095488 |
| E2F6#1876 | 4 | 5.01715573169739 | 0.0015780219347306 | 0.00996475197057434 |
| EBF1#1879 | 4 | 8.906466846569 | 0.0001588790747201 | 0.00199509098048485 |
| ELF1#1997 | 4 | 4.25809795880754 | 0.00304152556578124 | 0.0160796703905151 |
| GABPB1#2553 | 4 | 7.06768383618217 | 0.000400687686442317 | 0.00390149368677504 |
| HEY1#23462 | 4 | 4.04011104310571 | 0.0037530463691798 | 0.0185888461420264 |
| HMGN3#9324 | 4 | 8.17854772335059 | 0.000223457028444047 | 0.00248035164137186 |
| NRF1#4899 | 4 | 12.2102794477109 | 4.49717228915276e-05 | 0.000793378676869637 |
| PAX5#5079 | 4 | 6.66956553117783 | 0.000505277416948326 | 0.00443674694372509 |
| RAD21#5885 | 4 | 10.3550338954563 | 8.6948481184721e-05 | 0.00129319459220323 |
| SMARCB1#6598 | 4 | 18.2527157811574 | 9.00423392720929e-06 | 0.00024125017627599 |
| SMC3#9126 | 4 | 15.0449328449328 | 1.95092670935632e-05 | 0.000437707485710988 |
| SRF#6722 | 4 | 13.7971782621678 | 2.75840773062708e-05 | 0.00058387787794682 |
| TAF1#6872 | 4 | 3.34304628574529 | 0.00800566489870165 | 0.0321937405704633 |
| TAF7#6879 | 4 | 11.4330694049239 | 5.85061525419808e-05 | 0.000968355636344205 |
| TBP#6908 | 4 | 3.70677068709639 | 0.00529637781478435 | 0.0243967892470455 |
| TCF12#6938 | 4 | 10.6344649021864 | 7.8163066689251e-05 | 0.00119995186270156 |
| YY1#7528 | 4 | 4.91117074985386 | 0.0017187183805544 | 0.0106763355110165 |
| ZBTB7A#51341 | 4 | 7.3519093078759 | 0.00034222354001599 | 0.00346298656096599 |
| ZNF143#7702 | 4 | 13.5008765522279 | 3.00867915035614e-05 | 0.000620504426903722 |
| ZNF263#10127 | 4 | 8.22184163701068 | 0.000218787118095832 | 0.00248665881236376 |
| ZNF274#10782 | 4 | 1421.74615384615 | 2.33614176794641e-13 | 3.50049225398214e-11 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
