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Coexpression cluster:C74: Difference between revisions

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|tf_chipseq_enrich=BATF#10538;27:2.69533052619753:3.52215421913079e-06:0.000116371485128694!BCL11A#53335;33:3.83685253450423:5.23134556758931e-11:5.88112486257761e-09!BCL3#602;19:2.69014325111077:0.000107022627519751:0.00149011281102991!EBF1#1879;86:3.13916454428252:5.26707590488517e-23:1.54086313846023e-20!IRF4#3662;35:3.14347518047559:2.45973276581118e-09:2.08855309210206e-07!MEF2A#4205;31:2.38131212376625:7.7876839682798e-06:0.000220835711638114!NFKB1#4790;65:1.4619841089041:0.000735176629385006:0.00579261501292649!SPI1#6688;52:1.74846238706222:4.08841345355154e-05:0.000743107923208265!TCF12#6938;42:1.83052264709766:9.67224990412336e-05:0.00137661502825939
|tf_chipseq_enrich=BATF#10538;27:2.69533052619753:3.52215421913079e-06:0.000116371485128694!BCL11A#53335;33:3.83685253450423:5.23134556758931e-11:5.88112486257761e-09!BCL3#602;19:2.69014325111077:0.000107022627519751:0.00149011281102991!EBF1#1879;86:3.13916454428252:5.26707590488517e-23:1.54086313846023e-20!IRF4#3662;35:3.14347518047559:2.45973276581118e-09:2.08855309210206e-07!MEF2A#4205;31:2.38131212376625:7.7876839682798e-06:0.000220835711638114!NFKB1#4790;65:1.4619841089041:0.000735176629385006:0.00579261501292649!SPI1#6688;52:1.74846238706222:4.08841345355154e-05:0.000743107923208265!TCF12#6938;42:1.83052264709766:9.67224990412336e-05:0.00137661502825939
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|tfbs_overrepresentation_for_novel_motifs=0.00629189,0.000734113,0.0102248,0.947077,1.40946,0.59806,0.0306949,2.07676,0.151979,0.000113806,0.00127144,0.730756,3.61915e-05,0.0255451,1.57684,0.384092,0.309433,1.12027,0.0191974,0.102986,0.40166,0.0465652,0.00227866,1.71359,0.087221,0.0145494,0.615784,0.146959,0.00129517,0.202601,0.077445,0.392429,0.701599,0.297132,2.89039e-05,6.69943e-07,6.30215e-09,0.0179188,0.655655,6.65105e-06,1.40302,0.000410955,0.60706,0.750189,1.61497e-05,0.0120904,0.0134048,0.0314707,1.85706,0.457586,0.0438288,0.127938,0.190629,0.0342573,0.0240674,0.16151,3.71382,0.00191427,0.245312,0.00585437,0.168508,0.000242399,1.51401,0.0273944,0.0188364,0.105784,1.03963,0.583331,0.55927,0.747727,0.00089088,1.67895,1.24138e-10,0.1019,3.96523e-08,0.00233654,0.104043,0.0593671,0.549072,1.52501,3.96063,0.0696036,0.803274,2.34303,0.0159448,0,0.0466826,0.000379785,0.117667,0.264107,0.070957,0.060932,0.264653,0.569907,7.76554e-08,4.07266,0.371011,0.0293024,0.662086,0.00277627,0.467899,0.419604,0.0839396,0.4898,0.436386,0.00112249,0.0325168,1.70363,0.00871802,2.13608e-07,0.150748,0.327827,1.16706,0.126248,1.1924,1.03515,3.3881e-10,0.576406,0.309563,0.501573,0.45425,0.456225,0.237617,0.506396,2.82668,0.359572,1.0409,0.273413,0.123954,0.0886511,0.163135,0.748844,0.314993,0.0897866,0.554617,0.0821373,1.01908,0.41848,0.0611635,0.620891,0.299904,0.734579,0.503105,0.186683,0.292557,0.0548998,0.0128009,0.485833,0.472425,0.000662455,0.194902,0,0.0614053,0.00174236,0.277097,0.130409,2.8793,0.21093,0.0323519,1.82056e-07,0.0496824,0.295639,1.04557,0.00910556,1.81317,0.326989,0.430989,0.517356,2.96049e-14
}}
}}

Revision as of 13:20, 26 November 2012


Full id: C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy



Phase1 CAGE Peaks

Hg19::chr10:11250467..11250470,+p@chr10:11250467..11250470
+
Hg19::chr10:11250483..11250503,+p@chr10:11250483..11250503
+
Hg19::chr10:121920932..121920941,+p@chr10:121920932..121920941
+
Hg19::chr10:121920981..121920985,+p@chr10:121920981..121920985
+
Hg19::chr10:121921002..121921049,+p@chr10:121921002..121921049
+
Hg19::chr10:121921056..121921067,+p@chr10:121921056..121921067
+
Hg19::chr10:121921068..121921072,+p@chr10:121921068..121921072
+
Hg19::chr10:135267421..135267431,+p1@LOC619207
Hg19::chr10:135267439..135267457,+p1@ENST00000333815
p1@ENST00000463137
Hg19::chr10:135277024..135277027,+p@chr10:135277024..135277027
+
Hg19::chr10:26623901..26623902,-p@chr10:26623901..26623902
-
Hg19::chr10:49459712..49459724,-p7@FRMPD2
Hg19::chr10:49459731..49459746,-p3@FRMPD2
Hg19::chr10:49459754..49459755,-p17@FRMPD2
Hg19::chr10:49459824..49459841,-p8@FRMPD2
Hg19::chr11:111311357..111311378,-p@chr11:111311357..111311378
-
Hg19::chr11:134225949..134225960,+p@chr11:134225949..134225960
+
Hg19::chr11:2644357..2644369,+p@chr11:2644357..2644369
+
Hg19::chr12:102872651..102872687,-p9@IGF1
Hg19::chr12:103572306..103572321,-p1@ENST00000548415
Hg19::chr12:103572324..103572330,-p3@ENST00000548415
Hg19::chr12:103572345..103572350,-p5@ENST00000548415
Hg19::chr12:108936940..108936954,-p@chr12:108936940..108936954
-
Hg19::chr12:108936965..108936968,-p@chr12:108936965..108936968
-
Hg19::chr12:108938911..108938913,-p17@SART3
Hg19::chr12:108939411..108939428,-p@chr12:108939411..108939428
-
Hg19::chr12:108945476..108945481,-p@chr12:108945476..108945481
-
Hg19::chr12:110449219..110449232,+p@chr12:110449219..110449232
+
Hg19::chr12:111099214..111099224,-p@chr12:111099214..111099224
-
Hg19::chr12:111099231..111099276,-p@chr12:111099231..111099276
-
Hg19::chr12:111099305..111099321,-p@chr12:111099305..111099321
-
Hg19::chr12:115345793..115345801,+p@chr12:115345793..115345801
+
Hg19::chr12:11709298..11709307,+p@chr12:11709298..11709307
+
Hg19::chr12:11709356..11709367,+p@chr12:11709356..11709367
+
Hg19::chr12:11709380..11709392,+p@chr12:11709380..11709392
+
Hg19::chr12:129304510..129304516,-p12@SLC15A4
Hg19::chr12:129304529..129304538,-p9@SLC15A4
Hg19::chr12:129304541..129304557,-p6@SLC15A4
Hg19::chr12:129304564..129304573,-p14@SLC15A4
Hg19::chr12:131201475..131201485,-p@chr12:131201475..131201485
-
Hg19::chr12:131201517..131201523,-p@chr12:131201517..131201523
-
Hg19::chr12:131978041..131978090,-p@chr12:131978041..131978090
-
Hg19::chr12:31135417..31135423,+p@chr12:31135417..31135423
+
Hg19::chr12:31135429..31135469,+p@chr12:31135429..31135469
+
Hg19::chr12:46601560..46601566,-p@chr12:46601560..46601566
-
Hg19::chr12:6559594..6559599,+p@chr12:6559594..6559599
+
Hg19::chr12:6559604..6559609,+p@chr12:6559604..6559609
+
Hg19::chr12:6559620..6559633,+p@chr12:6559620..6559633
+
Hg19::chr12:6569974..6569980,+p15@TAPBPL
Hg19::chr12:68809739..68809749,-p@chr12:68809739..68809749
-
Hg19::chr12:68835991..68836013,-p1@ENST00000546086
Hg19::chr13:100016406..100016419,+p@chr13:100016406..100016419
+
Hg19::chr13:99573473..99573481,-p@chr13:99573473..99573481
-
Hg19::chr13:99960187..99960197,+p19@UBAC2
Hg19::chr13:99963588..99963595,+p@chr13:99963588..99963595
+
Hg19::chr14:22961812..22961834,+p1@TRAJ47
Hg19::chr14:22961840..22961847,+p1@uc001wen.1
Hg19::chr14:69533595..69533600,+p@chr14:69533595..69533600
+
Hg19::chr14:87524571..87524574,+p@chr14:87524571..87524574
+
Hg19::chr15:28273286..28273295,-p@chr15:28273286..28273295
-
Hg19::chr15:48708676..48708705,-p@chr15:48708676..48708705
-
Hg19::chr15:60860582..60860605,-p@chr15:60860582..60860605
-
Hg19::chr15:64171480..64171487,-p@chr15:64171480..64171487
-
Hg19::chr16:11076765..11076778,+p@chr16:11076765..11076778
+
Hg19::chr16:11076781..11076789,+p@chr16:11076781..11076789
+
Hg19::chr16:11089706..11089712,+p@chr16:11089706..11089712
+
Hg19::chr16:13533722..13533732,+p@chr16:13533722..13533732
+
Hg19::chr16:13533845..13533856,+p@chr16:13533845..13533856
+
Hg19::chr16:68791502..68791534,+p@chr16:68791502..68791534
+
Hg19::chr17:36903154..36903161,-p17@PCGF2
Hg19::chr17:42426327..42426341,+p20@GRN
Hg19::chr17:42426344..42426350,+p29@GRN
Hg19::chr17:42426361..42426388,+p10@GRN
Hg19::chr17:42426403..42426410,+p28@GRN
Hg19::chr17:42426418..42426423,+p30@GRN
Hg19::chr17:67114125..67114150,-p4@ABCA6
Hg19::chr17:76694595..76694631,-p@chr17:76694595..76694631
-
Hg19::chr17:76730956..76730966,-p@chr17:76730956..76730966
-
Hg19::chr18:51746035..51746040,-p@chr18:51746035..51746040
-
Hg19::chr18:51746146..51746168,-p@chr18:51746146..51746168
-
Hg19::chr18:66231239..66231254,-p@chr18:66231239..66231254
-
Hg19::chr18:66255584..66255591,-p@chr18:66255584..66255591
-
Hg19::chr18:67789010..67789054,-p12@RTTN
Hg19::chr18:71815987..71816008,+p5@TIMM21
Hg19::chr18:71819121..71819128,-p@chr18:71819121..71819128
-
Hg19::chr18:8608021..8608050,+p@chr18:8608021..8608050
+
Hg19::chr19:14698153..14698165,+p@chr19:14698153..14698165
+
Hg19::chr19:15757649..15757664,+p@chr19:15757649..15757664
+
Hg19::chr19:28487007..28487019,+p@chr19:28487007..28487019
+
Hg19::chr19:28559117..28559154,+p@chr19:28559117..28559154
+
Hg19::chr19:33310837..33310847,+p@chr19:33310837..33310847
+
Hg19::chr19:35899569..35899580,+p@chr19:35899569..35899580
+
Hg19::chr19:44617476..44617478,+p3@ZNF225
Hg19::chr1:117605045..117605055,+p@chr1:117605045..117605055
+
Hg19::chr1:12206640..12206651,+p@chr1:12206640..12206651
+
Hg19::chr1:170632028..170632043,+p20@PRRX1
Hg19::chr1:170632051..170632081,+p16@PRRX1
Hg19::chr1:206290165..206290174,-p@chr1:206290165..206290174
-
Hg19::chr1:206290337..206290360,-p@chr1:206290337..206290360
-
Hg19::chr1:220891610..220891613,+p@chr1:220891610..220891613
+
Hg19::chr1:220891733..220891744,+p@chr1:220891733..220891744
+
Hg19::chr1:233621257..233621284,-p@chr1:233621257..233621284
-
Hg19::chr20:52521834..52521857,+p@chr20:52521834..52521857
+
Hg19::chr20:52521925..52521931,+p@chr20:52521925..52521931
+
Hg19::chr20:52521950..52521955,-p@chr20:52521950..52521955
-
Hg19::chr20:52522037..52522063,+p@chr20:52522037..52522063
+
Hg19::chr20:52522066..52522077,+p@chr20:52522066..52522077
+
Hg19::chr20:52681445..52681457,+p@chr20:52681445..52681457
+
Hg19::chr20:52681458..52681463,+p@chr20:52681458..52681463
+
Hg19::chr21:43815504..43815514,-p8@TMPRSS3
Hg19::chr21:43815581..43815595,-p5@TMPRSS3
Hg19::chr22:23040085..23040092,+p2@IGLV2-23
Hg19::chr2:102615532..102615543,+p4@IL1R2
Hg19::chr2:157368616..157368634,+p@chr2:157368616..157368634
+
Hg19::chr2:171069600..171069605,+p@chr2:171069600..171069605
+
Hg19::chr2:231454268..231454307,-p@chr2:231454268..231454307
-
Hg19::chr2:234346165..234346166,+p@chr2:234346165..234346166
+
Hg19::chr2:242067139..242067166,-p8@PASK
Hg19::chr2:54803094..54803113,+p@chr2:54803094..54803113
+
Hg19::chr2:62964530..62964571,+p@chr2:62964530..62964571
+
Hg19::chr2:70388198..70388245,-p@chr2:70388198..70388245
-
Hg19::chr2:80688850..80688866,+p@chr2:80688850..80688866
+
Hg19::chr2:80688870..80688884,+p@chr2:80688870..80688884
+
Hg19::chr2:889109..889122,-p@chr2:889109..889122
-
Hg19::chr2:95539118..95539127,+p@chr2:95539118..95539127
+
Hg19::chr2:95539129..95539138,+p@chr2:95539129..95539138
+
Hg19::chr2:95715510..95715517,-p@chr2:95715510..95715517
-
Hg19::chr2:95715551..95715552,-p@chr2:95715551..95715552
-
Hg19::chr3:101667988..101668009,+p@chr3:101667988..101668009
+
Hg19::chr3:111852019..111852029,-p3@GCET2
Hg19::chr3:121982906..121982929,-p@chr3:121982906..121982929
-
Hg19::chr3:152071595..152071617,+p@chr3:152071595..152071617
+
Hg19::chr3:17096068..17096107,-p@chr3:17096068..17096107
-
Hg19::chr3:178791955..178791978,-p@chr3:178791955..178791978
-
Hg19::chr3:195970302..195970310,+p@chr3:195970302..195970310
+
Hg19::chr3:195997378..195997383,-p2@AB527582
Hg19::chr3:195997410..195997433,-p7@PCYT1A
Hg19::chr3:31289773..31289780,-p@chr3:31289773..31289780
-
Hg19::chr3:31289816..31289833,-p@chr3:31289816..31289833
-
Hg19::chr3:31289858..31289865,-p@chr3:31289858..31289865
-
Hg19::chr3:3540888..3540916,-p@chr3:3540888..3540916
-
Hg19::chr3:58200171..58200183,-p11@DNASE1L3
Hg19::chr3:58200221..58200232,-p12@DNASE1L3
Hg19::chr3:58200702..58200712,-p18@DNASE1L3
Hg19::chr3:97952477..97952503,+p1@ENST00000508616
Hg19::chr3:97963714..97963720,+p@chr3:97963714..97963720
+
Hg19::chr3:98037264..98037267,+p@chr3:98037264..98037267
+
Hg19::chr3:98248859..98248863,-p@chr3:98248859..98248863
-
Hg19::chr3:98250770..98250781,+p2@GPR15
Hg19::chr3:98452533..98452558,-p@chr3:98452533..98452558
-
Hg19::chr5:107052381..107052389,-p2@ENST00000509458
Hg19::chr5:107052398..107052411,-p1@ENST00000509458
Hg19::chr5:107052473..107052479,-p1@ENST00000502287
Hg19::chr5:110860412..110860420,+p@chr5:110860412..110860420
+
Hg19::chr5:142589828..142589832,-p@chr5:142589828..142589832
-
Hg19::chr5:159658966..159658980,+p5@FABP6
Hg19::chr5:76928376..76928393,-p@chr5:76928376..76928393
-
Hg19::chr5:76928395..76928400,-p@chr5:76928395..76928400
-
Hg19::chr5:76928409..76928430,-p@chr5:76928409..76928430
-
Hg19::chr5:76928451..76928461,-p@chr5:76928451..76928461
-
Hg19::chr6:112087889..112087893,-p@chr6:112087889..112087893
-
Hg19::chr6:11722768..11722783,+p@chr6:11722768..11722783
+
Hg19::chr6:139592240..139592247,-p8@TXLNB
Hg19::chr6:139592260..139592277,-p@chr6:139592260..139592277
-
Hg19::chr6:146350744..146350749,+p8@GRM1
Hg19::chr6:154567877..154567903,-p8@IPCEF1
Hg19::chr6:154567956..154567970,-p12@IPCEF1
Hg19::chr6:154567984..154568002,-p7@IPCEF1
Hg19::chr6:37484849..37484882,+p@chr6:37484849..37484882
+
Hg19::chr6:43154622..43154630,+p10@CUL9
Hg19::chr6:43154656..43154671,+p5@CUL9
Hg19::chr6:89372201..89372206,+p@chr6:89372201..89372206
+
Hg19::chr7:151168860..151168890,-p12@RHEB
Hg19::chr7:1978144..1978151,-p@chr7:1978144..1978151
-
Hg19::chr7:1978153..1978166,-p@chr7:1978153..1978166
-
Hg19::chr7:28452103..28452108,+p24@CREB5
Hg19::chr7:28452130..28452154,+p10@CREB5
Hg19::chr7:3188726..3188730,-p@chr7:3188726..3188730
-
Hg19::chr7:36990869..36990892,-p@chr7:36990869..36990892
-
Hg19::chr7:36990915..36990932,-p@chr7:36990915..36990932
-
Hg19::chr7:70229911..70229931,+p23@AUTS2
Hg19::chr8:10389459..10389480,-p@chr8:10389459..10389480
-
Hg19::chr8:137493847..137493872,+p@chr8:137493847..137493872
+
Hg19::chr8:137528321..137528332,+p@chr8:137528321..137528332
+
Hg19::chr8:137528369..137528387,+p@chr8:137528369..137528387
+
Hg19::chr8:137528395..137528409,+p@chr8:137528395..137528409
+
Hg19::chr8:137528436..137528449,+p@chr8:137528436..137528449
+
Hg19::chr8:137531155..137531162,+p@chr8:137531155..137531162
+
Hg19::chr8:142154259..142154265,+p16@DENND3
Hg19::chr8:26449449..26449465,+p@chr8:26449449..26449465
+
Hg19::chr8:42623747..42623755,-p7@CHRNA6
Hg19::chr8:42623839..42623845,-p8@CHRNA6
Hg19::chr8:42623846..42623865,-p2@CHRNA6
Hg19::chr8:42623910..42623918,-p9@CHRNA6
Hg19::chr8:42623924..42623935,-p5@CHRNA6
Hg19::chr8:56034458..56034491,+p@chr8:56034458..56034491
+
Hg19::chr8:62010056..62010066,+p@chr8:62010056..62010066
+
Hg19::chr8:62010074..62010083,+p@chr8:62010074..62010083
+
Hg19::chr8:62010086..62010098,+p@chr8:62010086..62010098
+
Hg19::chr8:62010112..62010123,+p@chr8:62010112..62010123
+
Hg19::chr8:62010125..62010147,+p@chr8:62010125..62010147
+
Hg19::chr8:62011828..62011834,+p@chr8:62011828..62011834
+
Hg19::chr8:6269577..6269600,+p@chr8:6269577..6269600
+
Hg19::chr8:63655497..63655509,-p@chr8:63655497..63655509
-
Hg19::chr8:63836397..63836400,-p@chr8:63836397..63836400
-
Hg19::chr8:6582579..6582584,+p@chr8:6582579..6582584
+
Hg19::chr8:6589557..6589575,+p@chr8:6589557..6589575
+
Hg19::chr8:6590117..6590131,+p@chr8:6590117..6590131
+
Hg19::chr8:6594201..6594208,+p@chr8:6594201..6594208
+
Hg19::chr8:6594225..6594236,+p@chr8:6594225..6594236
+
Hg19::chr8:6594260..6594276,+p@chr8:6594260..6594276
+
Hg19::chr8:6594766..6594776,+p@chr8:6594766..6594776
+
Hg19::chr8:6596214..6596215,+p@chr8:6596214..6596215
+
Hg19::chr8:8469281..8469289,-p@chr8:8469281..8469289
-
Hg19::chr9:101998683..101998691,+p@chr9:101998683..101998691
+
Hg19::chr9:126760414..126760426,+p@chr9:126760414..126760426
+
Hg19::chr9:132758002..132758011,-p@chr9:132758002..132758011
-
Hg19::chr9:1912257..1912260,-p@chr9:1912257..1912260
-
Hg19::chr9:1923680..1923685,-p@chr9:1923680..1923685
-
Hg19::chr9:1928429..1928436,+p@chr9:1928429..1928436
+
Hg19::chr9:1928479..1928487,+p@chr9:1928479..1928487
+
Hg19::chr9:1930369..1930389,-p@chr9:1930369..1930389
-
Hg19::chr9:1939593..1939599,-p@chr9:1939593..1939599
-
Hg19::chr9:20981394..20981397,+p@chr9:20981394..20981397
+
Hg19::chr9:20981408..20981415,+p@chr9:20981408..20981415
+
Hg19::chr9:20981421..20981424,+p@chr9:20981421..20981424
+
Hg19::chr9:5517055..5517075,+p@chr9:5517055..5517075
+
Hg19::chrX:12513079..12513091,+p@chrX:12513079..12513091
+
Hg19::chrX:148281046..148281051,+p@chrX:148281046..148281051
+
Hg19::chrX:148281054..148281070,+p@chrX:148281054..148281070
+
Hg19::chrX:148281091..148281099,+p@chrX:148281091..148281099
+
Hg19::chrX:148281109..148281119,+p@chrX:148281109..148281119
+
Hg19::chrX:148281139..148281150,+p@chrX:148281139..148281150
+
Hg19::chrX:18850242..18850251,+p@chrX:18850242..18850251
+
Hg19::chrX:47464408..47464418,-p@chrX:47464408..47464418
-
Hg19::chrX:47464454..47464502,-p@chrX:47464454..47464502
-
Hg19::chrX:47464510..47464521,-p@chrX:47464510..47464521
-
Hg19::chrX:47464522..47464533,-p@chrX:47464522..47464533
-
Hg19::chrX:47464589..47464597,-p@chrX:47464589..47464597
-
Hg19::chrX:47464655..47464661,-p@chrX:47464655..47464661
-
Hg19::chrX:47464670..47464673,-p@chrX:47464670..47464673
-
Hg19::chrX:9880874..9880884,+p14@SHROOM2
Hg19::chrX:9880892..9880918,+p9@SHROOM2
Hg19::chrX:9880920..9880929,+p22@SHROOM2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0051905establishment of pigment granule localization0.0369430903821675
GO:0051875pigment granule localization0.0369430903821675
GO:0002089lens morphogenesis in camera-type eye0.0369430903821675
GO:0033143regulation of steroid hormone receptor signaling pathway0.0369430903821675
GO:0032401establishment of melanosome localization0.0369430903821675
GO:0032400melanosome localization0.0369430903821675
GO:0008057eye pigment granule organization and biogenesis0.0369430903821675
GO:0009441glycolate metabolic process0.0369430903821675
GO:0004105choline-phosphate cytidylyltransferase activity0.0369430903821675
GO:0043482cellular pigment accumulation0.0369430903821675
GO:0048753pigment granule organization and biogenesis0.0369430903821675
GO:0004910interleukin-1, Type II, blocking receptor activity0.0369430903821675
GO:0032438melanosome organization and biogenesis0.0369430903821675
GO:0043476pigment accumulation0.0369430903821675
GO:0019968interleukin-1, Type II, blocking binding0.0369430903821675
GO:0005044scavenger receptor activity0.0369430903821675
GO:0017080sodium channel regulator activity0.0418835658739913
GO:0006883cellular sodium ion homeostasis0.0418835658739913
GO:0002088lens development in camera-type eye0.0418835658739913
GO:0055078sodium ion homeostasis0.0418835658739913
GO:0033059cellular pigmentation0.0418835658739913



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
spleen1.85e-123
gastrointestinal system mesentery1.85e-123
stomach region1.85e-123
mesentery1.85e-123
gastrointestinal system serosa1.85e-123
mesentery of stomach1.85e-123
gut mesentery1.85e-123
dorsal mesentery1.85e-123
dorsal mesogastrium1.85e-123
peritoneal cavity1.85e-123
spleen primordium1.85e-123


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BATF#10538272.695330526197533.52215421913079e-060.000116371485128694
BCL11A#53335333.836852534504235.23134556758931e-115.88112486257761e-09
BCL3#602192.690143251110770.0001070226275197510.00149011281102991
EBF1#1879863.139164544282525.26707590488517e-231.54086313846023e-20
IRF4#3662353.143475180475592.45973276581118e-092.08855309210206e-07
MEF2A#4205312.381312123766257.7876839682798e-060.000220835711638114
NFKB1#4790651.46198410890410.0007351766293850060.00579261501292649
SPI1#6688521.748462387062224.08841345355154e-050.000743107923208265
TCF12#6938421.830522647097669.67224990412336e-050.00137661502825939



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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