Main Page: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 92: | Line 92: | ||
</table> | </table> | ||
contact: fantom@gsc.riken.jp | |||
Revision as of 20:34, 22 November 2012
FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project
| Gene Search | |||
|---|---|---|---|
| Examples | Browse | ||
| Samples | Details of profiled samples (incl. primary cells, cell lines, and tissues) | ||
| Sample classifications |
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology (FF), consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON). |
||
| Co-expression |
CAGE peaks (TSS regions) are grouped based on expression, by using MCL |
||
| Motifs |
de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by MacroApe |
||
| Transcription factors |
Transcription factors. |
||
contact: fantom@gsc.riken.jp
