FFCP PHASE1:Hg19::chr17:48268194..48268230,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000055!2.77e-36!180;CL:0000057!7.06e-27!75;CL:0000183!8.23e-13!59;CL:0000680!2.19e-12!57;CL:0000056!2.19e-12!57;CL:0000355!2.19e-12!57;CL:0000048!2.41e-12!430;CL:0000723!1.10e-11!436;CL:0000187!1.85e-11!54;CL:0000034!5.07e-11!444;CL:0000393!1.74e-09!60;CL:0000211!1.74e-09!60;CL:0002620!2.17e-09!23;CL:0002334!7.10e-09!12;CL:0000192!1.83e-08!42;CL:0000514!1.83e-08!42;CL:0002371!2.53e-08!591;CL:0000144!4.70e-08!625;CL:0002494!2.39e-07!16;CL:0002320!9.67e-07!365 | |ontology_enrichment_celltype=CL:0000055!2.77e-36!180;CL:0000057!7.06e-27!75;CL:0000183!8.23e-13!59;CL:0000680!2.19e-12!57;CL:0000056!2.19e-12!57;CL:0000355!2.19e-12!57;CL:0000048!2.41e-12!430;CL:0000723!1.10e-11!436;CL:0000187!1.85e-11!54;CL:0000034!5.07e-11!444;CL:0000393!1.74e-09!60;CL:0000211!1.74e-09!60;CL:0002620!2.17e-09!23;CL:0002334!7.10e-09!12;CL:0000192!1.83e-08!42;CL:0000514!1.83e-08!42;CL:0002371!2.53e-08!591;CL:0000144!4.70e-08!625;CL:0002494!2.39e-07!16;CL:0002320!9.67e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.01e-09;12!CL:0000134;6.12e-09;55!CL:0000057;7.67e-09;73!CL:0002320;8.34e-09;188!CL:0000499;1.03e-08;28!CL:0000723;2.93e-08;61!CL:0000048;5.06e-08;58!CL:0000327;1.45e-07;15!CL:0002620;3.28e-07;23 | |ontology_enrichment_celltype_v019=CL:0002334;1.01e-09;12!CL:0000134;6.12e-09;55!CL:0000057;7.67e-09;73!CL:0002320;8.34e-09;188!CL:0000499;1.03e-08;28!CL:0000723;2.93e-08;61!CL:0000048;5.06e-08;58!CL:0000327;1.45e-07;15!CL:0002620;3.28e-07;23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.10e-23,76;CL:0000048,2.06e-16,427;CL:0000723,1.35e-15,433;CL:0000034,1.50e-14,441;CL:0002320,1.31e-10,361;CL:0002334,7.76e-10,12;CL:0000680,8.67e-10,58;CL:0000056,8.67e-10,58;CL:0000355,8.67e-10,58;CL:0000134,2.54e-09,354;CL:0000499,6.97e-09,28;CL:0000187,9.66e-09,55;CL:0000192,5.82e-08,43;CL:0000514,5.82e-08,43;CL:0000327,8.30e-08,15;CL:0000219,2.11e-07,386;CL:0002620,2.88e-07,23;CL:0000393,4.70e-07,61;CL:0000211,4.70e-07,61 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.99e-15!83;UBERON:0002329!1.99e-15!83;UBERON:0003077!1.99e-15!83;UBERON:0003059!1.99e-15!83;UBERON:0007282!1.99e-15!83;UBERON:0009618!1.99e-15!83;UBERON:0007285!1.99e-15!83;UBERON:0004290!5.01e-14!70;UBERON:0002385!7.71e-13!63;UBERON:0001015!7.71e-13!63;UBERON:0000383!7.71e-13!63;UBERON:0001134!1.11e-12!61;UBERON:0002036!1.11e-12!61;UBERON:0003082!1.11e-12!61;UBERON:0000486!3.26e-11!82;UBERON:0005256!8.93e-11!143;UBERON:0000948!3.11e-08!24;UBERON:0005498!3.11e-08!24;UBERON:0004140!3.11e-08!24;UBERON:0009881!3.11e-08!24;UBERON:0004141!3.11e-08!24;UBERON:0003084!3.11e-08!24;UBERON:0007005!3.11e-08!24;UBERON:0004139!3.11e-08!24;UBERON:0004291!3.11e-08!24;UBERON:0004872!3.65e-08!84;UBERON:0002100!8.57e-08!216;UBERON:0003102!1.19e-07!95;UBERON:0002199!5.47e-07!45;UBERON:0002416!5.47e-07!45;UBERON:0000475!7.26e-07!365;UBERON:0002384!7.34e-07!375 | |ontology_enrichment_uberon=UBERON:0000914!1.99e-15!83;UBERON:0002329!1.99e-15!83;UBERON:0003077!1.99e-15!83;UBERON:0003059!1.99e-15!83;UBERON:0007282!1.99e-15!83;UBERON:0009618!1.99e-15!83;UBERON:0007285!1.99e-15!83;UBERON:0004290!5.01e-14!70;UBERON:0002385!7.71e-13!63;UBERON:0001015!7.71e-13!63;UBERON:0000383!7.71e-13!63;UBERON:0001134!1.11e-12!61;UBERON:0002036!1.11e-12!61;UBERON:0003082!1.11e-12!61;UBERON:0000486!3.26e-11!82;UBERON:0005256!8.93e-11!143;UBERON:0000948!3.11e-08!24;UBERON:0005498!3.11e-08!24;UBERON:0004140!3.11e-08!24;UBERON:0009881!3.11e-08!24;UBERON:0004141!3.11e-08!24;UBERON:0003084!3.11e-08!24;UBERON:0007005!3.11e-08!24;UBERON:0004139!3.11e-08!24;UBERON:0004291!3.11e-08!24;UBERON:0004872!3.65e-08!84;UBERON:0002100!8.57e-08!216;UBERON:0003102!1.19e-07!95;UBERON:0002199!5.47e-07!45;UBERON:0002416!5.47e-07!45;UBERON:0000475!7.26e-07!365;UBERON:0002384!7.34e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.70e-09;198!UBERON:0003688;4.84e-08;6!UBERON:0002358;4.84e-08;6!UBERON:0003684;4.84e-08;6!UBERON:0001178;4.84e-08;6!UBERON:0004457;9.83e-08;9!UBERON:0000042;9.83e-08;9 | |ontology_enrichment_uberon_v019=UBERON:0002384;2.70e-09;198!UBERON:0003688;4.84e-08;6!UBERON:0002358;4.84e-08;6!UBERON:0003684;4.84e-08;6!UBERON:0001178;4.84e-08;6!UBERON:0004457;9.83e-08;9!UBERON:0000042;9.83e-08;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.99e-11,371;UBERON:0001134,1.80e-10,62;UBERON:0002036,1.80e-10,62;UBERON:0003082,1.80e-10,62;UBERON:0007524,4.34e-10,73;UBERON:0002385,8.06e-10,64;UBERON:0001015,8.06e-10,64;UBERON:0000383,8.06e-10,64;UBERON:0002329,9.36e-10,71;UBERON:0003059,9.36e-10,71;UBERON:0007282,9.36e-10,71;UBERON:0004290,9.36e-10,71;UBERON:0009618,9.36e-10,71;UBERON:0007503,9.77e-10,78;UBERON:0003077,1.81e-09,72;UBERON:0007285,1.81e-09,72;UBERON:0003688,4.99e-08,6;UBERON:0002358,4.99e-08,6;UBERON:0003684,4.99e-08,6;UBERON:0001178,4.99e-08,6;UBERON:0000486,5.60e-08,83;UBERON:0005256,5.17e-07,122 | |||
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| ||
|short_description=p43@COL1A1 | |short_description=p43@COL1A1 | ||
}} | }} |
Revision as of 16:35, 15 November 2012
Short description: | p43@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_43_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 54bp_to_ENST00000494334_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.10e-23 | 76 |
multi fate stem cell | 2.06e-16 | 427 |
somatic stem cell | 1.35e-15 | 433 |
stem cell | 1.50e-14 | 441 |
connective tissue cell | 1.31e-10 | 361 |
preadipocyte | 7.76e-10 | 12 |
muscle precursor cell | 8.67e-10 | 58 |
myoblast | 8.67e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.67e-10 | 58 |
mesenchymal cell | 2.54e-09 | 354 |
stromal cell | 6.97e-09 | 28 |
muscle cell | 9.66e-09 | 55 |
smooth muscle cell | 5.82e-08 | 43 |
smooth muscle myoblast | 5.82e-08 | 43 |
extracellular matrix secreting cell | 8.30e-08 | 15 |
motile cell | 2.11e-07 | 386 |
skin fibroblast | 2.88e-07 | 23 |
electrically responsive cell | 4.70e-07 | 61 |
electrically active cell | 4.70e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.99e-11 | 371 |
skeletal muscle tissue | 1.80e-10 | 62 |
striated muscle tissue | 1.80e-10 | 62 |
myotome | 1.80e-10 | 62 |
dense mesenchyme tissue | 4.34e-10 | 73 |
muscle tissue | 8.06e-10 | 64 |
musculature | 8.06e-10 | 64 |
musculature of body | 8.06e-10 | 64 |
somite | 9.36e-10 | 71 |
presomitic mesoderm | 9.36e-10 | 71 |
presumptive segmental plate | 9.36e-10 | 71 |
dermomyotome | 9.36e-10 | 71 |
trunk paraxial mesoderm | 9.36e-10 | 71 |
epithelial vesicle | 9.77e-10 | 78 |
paraxial mesoderm | 1.81e-09 | 72 |
presumptive paraxial mesoderm | 1.81e-09 | 72 |
omentum | 4.99e-08 | 6 |
peritoneum | 4.99e-08 | 6 |
abdominal cavity | 4.99e-08 | 6 |
visceral peritoneum | 4.99e-08 | 6 |
multilaminar epithelium | 5.60e-08 | 83 |
trunk mesenchyme | 5.17e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.