FFCP PHASE1:Mm9::chr17:17539647..17539735,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|id=chr17:17539647..17539735,+ | |id=chr17:17539647..17539735,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.03e-10!43;CL:0000221!1.45e-10!44;CL:0000133!1.45e-10!44;CL:0000117!1.75e-10!23;CL:0000337!1.75e-10!23;CL:0000540!1.47e-09!33;CL:0000047!1.47e-09!33;CL:0000031!1.47e-09!33;CL:0000404!1.47e-09!33;CL:0000055!2.80e-07!50 | |ontology_enrichment_celltype=CL:0002319!1.03e-10!43;CL:0000221!1.45e-10!44;CL:0000133!1.45e-10!44;CL:0000117!1.75e-10!23;CL:0000337!1.75e-10!23;CL:0000540!1.47e-09!33;CL:0000047!1.47e-09!33;CL:0000031!1.47e-09!33;CL:0000404!1.47e-09!33;CL:0000055!2.80e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.75e-12,23;CL:0000337,8.75e-12,23;CL:0002319,9.49e-11,43;CL:0000221,3.37e-10,44;CL:0000133,3.37e-10,44;CL:0000540,3.35e-09,33;CL:0000047,3.35e-09,33;CL:0000031,3.35e-09,33;CL:0000404,3.35e-09,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.46e-28!102;UBERON:0000924!5.46e-28!102;UBERON:0006601!5.46e-28!102;UBERON:0002346!1.18e-27!71;UBERON:0003075!1.18e-27!71;UBERON:0007284!1.18e-27!71;UBERON:0000073!1.78e-27!75;UBERON:0001016!1.78e-27!75;UBERON:0001017!9.42e-27!73;UBERON:0005743!9.42e-27!73;UBERON:0001049!6.65e-24!52;UBERON:0005068!6.65e-24!52;UBERON:0006241!6.65e-24!52;UBERON:0007135!6.65e-24!52;UBERON:0000955!3.19e-23!50;UBERON:0006238!3.19e-23!50;UBERON:0000033!3.24e-23!63;UBERON:0002616!2.00e-22!49;UBERON:0003056!3.25e-21!49;UBERON:0003080!1.81e-19!40;UBERON:0002020!5.25e-19!34;UBERON:0002780!8.72e-19!39;UBERON:0001890!8.72e-19!39;UBERON:0006240!8.72e-19!39;UBERON:0002791!1.68e-16!29;UBERON:0003528!1.68e-16!29;UBERON:0001893!1.68e-16!29;UBERON:0000956!9.76e-14!21;UBERON:0001869!9.76e-14!21;UBERON:0000203!9.76e-14!21;UBERON:0000153!9.73e-12!94;UBERON:0002619!3.69e-11!17;UBERON:0007811!8.82e-10!86;UBERON:0002021!2.63e-08!10;UBERON:0000411!2.63e-08!10;UBERON:0001950!2.63e-08!10;UBERON:0000468!5.65e-07!333 | |ontology_enrichment_uberon=UBERON:0004121!5.46e-28!102;UBERON:0000924!5.46e-28!102;UBERON:0006601!5.46e-28!102;UBERON:0002346!1.18e-27!71;UBERON:0003075!1.18e-27!71;UBERON:0007284!1.18e-27!71;UBERON:0000073!1.78e-27!75;UBERON:0001016!1.78e-27!75;UBERON:0001017!9.42e-27!73;UBERON:0005743!9.42e-27!73;UBERON:0001049!6.65e-24!52;UBERON:0005068!6.65e-24!52;UBERON:0006241!6.65e-24!52;UBERON:0007135!6.65e-24!52;UBERON:0000955!3.19e-23!50;UBERON:0006238!3.19e-23!50;UBERON:0000033!3.24e-23!63;UBERON:0002616!2.00e-22!49;UBERON:0003056!3.25e-21!49;UBERON:0003080!1.81e-19!40;UBERON:0002020!5.25e-19!34;UBERON:0002780!8.72e-19!39;UBERON:0001890!8.72e-19!39;UBERON:0006240!8.72e-19!39;UBERON:0002791!1.68e-16!29;UBERON:0003528!1.68e-16!29;UBERON:0001893!1.68e-16!29;UBERON:0000956!9.76e-14!21;UBERON:0001869!9.76e-14!21;UBERON:0000203!9.76e-14!21;UBERON:0000153!9.73e-12!94;UBERON:0002619!3.69e-11!17;UBERON:0007811!8.82e-10!86;UBERON:0002021!2.63e-08!10;UBERON:0000411!2.63e-08!10;UBERON:0001950!2.63e-08!10;UBERON:0000468!5.65e-07!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.64e-29,75;UBERON:0000073,7.48e-29,54;UBERON:0001017,1.09e-28,73;UBERON:0002346,1.12e-28,64;UBERON:0003075,1.12e-28,64;UBERON:0007284,1.12e-28,64;UBERON:0001049,2.05e-27,52;UBERON:0005068,2.05e-27,52;UBERON:0006241,2.05e-27,52;UBERON:0007135,2.05e-27,52;UBERON:0004121,2.05e-25,95;UBERON:0000924,2.05e-25,95;UBERON:0006601,2.05e-25,95;UBERON:0000955,1.53e-24,47;UBERON:0006238,1.53e-24,47;UBERON:0003056,4.35e-24,49;UBERON:0002616,1.22e-23,46;UBERON:0010371,1.87e-22,73;UBERON:0003080,4.37e-22,40;UBERON:0002020,1.49e-21,34;UBERON:0002780,2.66e-21,39;UBERON:0001890,2.66e-21,39;UBERON:0006240,2.66e-21,39;UBERON:0003528,1.11e-18,29;UBERON:0002791,1.11e-18,29;UBERON:0001893,1.11e-18,29;UBERON:0010314,1.76e-17,92;UBERON:0000956,1.64e-15,21;UBERON:0001869,1.64e-15,21;UBERON:0000203,1.64e-15,21;UBERON:0002619,1.47e-12,17;UBERON:0002021,2.72e-09,10;UBERON:0000411,2.72e-09,10;UBERON:0001950,2.72e-09,10 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.63337663178344,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,3.2703773457067,2.63623419281366,2.91644848611425,1.25987779462826,2.87505128729943,0,0,0,0,0,0,2.22548106945558,3.1739458756322,1.26766280701236,0.338844532069132,0,0,0,0,2.09720077362883,8.06858441175265,28.4109537725229,33.0764548912642,28.604194743788,8.85518051651791,8.39300455616131,9.0643191419066,7.66763768145891,10.1114066527102,8.8092704799511,21.068410784056,21.3513081226178,1.18697658957174,2.19570344645783,5.2091337055676,21.217907924105,18.0084035210138,30.2540530598084,8.54422897873636,9.25415925194169,6.15118171223492,2.04460721999597,10.7311615351635,0,0,0,0,0,0,2.80888840263504,0,0,0,0.704217098883403,0,0,0,0,0,0,1.02765491747154,0,2.52351636410202,3.46970653532272,7.00270600117925,6.91846491768175,7.68685466818375,1.52865319276416,2.26199864393416,0,0.144599356919912,0,0.970601099684455,0.220841518460394,0,1.86391761218122,3.80615036115011,5.02672096352292,0.255457055208591,0,0,0,35.500381538943,26.5350349634803,3.64397621127307,50.2352285355679,53.9559614966997,30.3370545056958,27.7432559845866,1.42575109390443,2.36373244159177,3.79084137650512,2.73574412652416,4.29397461776922,1.14951052216736,1.98068342785884,3.0140963567143,2.72145996605311,3.33095672740609,3.27956035959051,6.20888089773638,40.0956466855087,21.1798809787958,8.97350733236139,5.91828477554452,8.06337022754234,1.74126083261083,2.46938563689532,1.79130840136644,0,0,0,0.414251545071004,0.703578179943289,0.180062061461015,0,0,0.154267112887378,0,0,0,0,0,0.162137619091711,0,0.658650345873152,0.536825675041487,57.6194459065709,38.2805158050938,0,0,13.4371597837197,2.32236671860439,1.28867461322093,0.605050573870028,1.33426826306922,0.951128130562796,0,1.4822905925161,0.754005626400808,0.994782360205754,2.14460495831032,1.79763881730844,0.432276099749388,0.597423819763102,0.569003702859245,0.799739588268102,1.1270773567308,0.203651327845314,0.775809948670503,1.1221731182451,1.07502113111237,0,0,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,1.13694847062291,0.325929952884052,0,0,0.167506257441816,0.476087281772027,0,0.315270288212382,0.221464689648775,0,0,0.172684981865896,0,0,0,0,0.275936746304732,15.0917554588524,14.7686725106176,0,0.252470927204373,0.315508219416257,1.56175497718655,1.29254038639679,0.238968797952552,2.45078541490634,1.13230612315533,0.809621403349789,4.9683495844923,1.97643888973262,132.705703682206,2.41298144854057,0.712262414669021,0.81443479676788,0.989820737835213,0,0.728341908464944,0.302323556964751,0.565815239267694,0.295301892880773,0,0.516856586336442,0,0,0,0,0,1.02131881726136,2.16073312837572,2.32845630808958,1.92903331528433,3.90148514013002,3.92411398724555,5.92376474167636,3.04464949114599,0,0.42366414172764,1.10264199027481,0,0.968786560175433,1.32688434841943,0.954978752025092,0.492422699235184,0.582961673259701,13.1651964427462,0,0,0.370389054739423,0,0,0,0,0,0,0.954670618015114,8.38290382990009,1.42323626988794,1.83609079397062,1.67270636811575,1.9652630737156,1.75323650300267,2.23164330458407,2.35580347785627,0.777689839750757,0,0,1.04661582230785,1.15820943319968,1.94451188344048,0.645799117388655,0.675824501963113,0.821500670520278,1.17183946359555,0.524296722128554,0,0.576060012515731,0,0,0.102710957164827,0,0.179026695667481,0,0,0.147689527174577,0,0.0762068066549998,0,0,0,0,0.226730383615211,0,0,0,1.54551675225752,0.187682475451182,0.915758121336325,0.214368379079066,0,59.8636953174091,75.9536640236842,73.3306257202428,55.6804310793548,36.9944560676147,35.5035131773159,42.5264175146038,39.1779446805072,33.9856806738153,37.278742446131,21.7953429926771,9.97562183502578,5.46347538413229,2.91728060481953,4.40187641518763,2.20612210140017,4.4449345560323,3.09052585858341,3.20919209591815,2.52697211763797,4.56262739802432,3.77252682772152,4.12022632867483,4.22566005872137,3.38869266838118,4.28664322154766,3.59241410429052,2.89363830695558,4.12085900803307,3.09117732282234,3.77156177623957,3.19456451086807,3.57654284920981,3.34296758254356,3.76437521661322,3.38458431566706,3.10977553883713,4.20911538300549,2.98769050460896,2.80571135828869,2.37270036248348,2.26560309463796,2.86461730218783,2.32405261778949,3.47231899766054,4.99621155875892,3.50897412668113,1.50409737833809,3.63447830930802,1.98532277207564,2.78241402744506 | |phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.63337663178344,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,3.2703773457067,2.63623419281366,2.91644848611425,1.25987779462826,2.87505128729943,0,0,0,0,0,0,2.22548106945558,3.1739458756322,1.26766280701236,0.338844532069132,0,0,0,0,2.09720077362883,8.06858441175265,28.4109537725229,33.0764548912642,28.604194743788,8.85518051651791,8.39300455616131,9.0643191419066,7.66763768145891,10.1114066527102,8.8092704799511,21.068410784056,21.3513081226178,1.18697658957174,2.19570344645783,5.2091337055676,21.217907924105,18.0084035210138,30.2540530598084,8.54422897873636,9.25415925194169,6.15118171223492,2.04460721999597,10.7311615351635,0,0,0,0,0,0,2.80888840263504,0,0,0,0.704217098883403,0,0,0,0,0,0,1.02765491747154,0,2.52351636410202,3.46970653532272,7.00270600117925,6.91846491768175,7.68685466818375,1.52865319276416,2.26199864393416,0,0.144599356919912,0,0.970601099684455,0.220841518460394,0,1.86391761218122,3.80615036115011,5.02672096352292,0.255457055208591,0,0,0,35.500381538943,26.5350349634803,3.64397621127307,50.2352285355679,53.9559614966997,30.3370545056958,27.7432559845866,1.42575109390443,2.36373244159177,3.79084137650512,2.73574412652416,4.29397461776922,1.14951052216736,1.98068342785884,3.0140963567143,2.72145996605311,3.33095672740609,3.27956035959051,6.20888089773638,40.0956466855087,21.1798809787958,8.97350733236139,5.91828477554452,8.06337022754234,1.74126083261083,2.46938563689532,1.79130840136644,0,0,0,0.414251545071004,0.703578179943289,0.180062061461015,0,0,0.154267112887378,0,0,0,0,0,0.162137619091711,0,0.658650345873152,0.536825675041487,57.6194459065709,38.2805158050938,0,0,13.4371597837197,2.32236671860439,1.28867461322093,0.605050573870028,1.33426826306922,0.951128130562796,0,1.4822905925161,0.754005626400808,0.994782360205754,2.14460495831032,1.79763881730844,0.432276099749388,0.597423819763102,0.569003702859245,0.799739588268102,1.1270773567308,0.203651327845314,0.775809948670503,1.1221731182451,1.07502113111237,0,0,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,1.13694847062291,0.325929952884052,0,0,0.167506257441816,0.476087281772027,0,0.315270288212382,0.221464689648775,0,0,0.172684981865896,0,0,0,0,0.275936746304732,15.0917554588524,14.7686725106176,0,0.252470927204373,0.315508219416257,1.56175497718655,1.29254038639679,0.238968797952552,2.45078541490634,1.13230612315533,0.809621403349789,4.9683495844923,1.97643888973262,132.705703682206,2.41298144854057,0.712262414669021,0.81443479676788,0.989820737835213,0,0.728341908464944,0.302323556964751,0.565815239267694,0.295301892880773,0,0.516856586336442,0,0,0,0,0,1.02131881726136,2.16073312837572,2.32845630808958,1.92903331528433,3.90148514013002,3.92411398724555,5.92376474167636,3.04464949114599,0,0.42366414172764,1.10264199027481,0,0.968786560175433,1.32688434841943,0.954978752025092,0.492422699235184,0.582961673259701,13.1651964427462,0,0,0.370389054739423,0,0,0,0,0,0,0.954670618015114,8.38290382990009,1.42323626988794,1.83609079397062,1.67270636811575,1.9652630737156,1.75323650300267,2.23164330458407,2.35580347785627,0.777689839750757,0,0,1.04661582230785,1.15820943319968,1.94451188344048,0.645799117388655,0.675824501963113,0.821500670520278,1.17183946359555,0.524296722128554,0,0.576060012515731,0,0,0.102710957164827,0,0.179026695667481,0,0,0.147689527174577,0,0.0762068066549998,0,0,0,0,0.226730383615211,0,0,0,1.54551675225752,0.187682475451182,0.915758121336325,0.214368379079066,0,59.8636953174091,75.9536640236842,73.3306257202428,55.6804310793548,36.9944560676147,35.5035131773159,42.5264175146038,39.1779446805072,33.9856806738153,37.278742446131,21.7953429926771,9.97562183502578,5.46347538413229,2.91728060481953,4.40187641518763,2.20612210140017,4.4449345560323,3.09052585858341,3.20919209591815,2.52697211763797,4.56262739802432,3.77252682772152,4.12022632867483,4.22566005872137,3.38869266838118,4.28664322154766,3.59241410429052,2.89363830695558,4.12085900803307,3.09117732282234,3.77156177623957,3.19456451086807,3.57654284920981,3.34296758254356,3.76437521661322,3.38458431566706,3.10977553883713,4.20911538300549,2.98769050460896,2.80571135828869,2.37270036248348,2.26560309463796,2.86461730218783,2.32405261778949,3.47231899766054,4.99621155875892,3.50897412668113,1.50409737833809,3.63447830930802,1.98532277207564,2.78241402744506 | ||
|short_description=p1@Lix1 | |short_description=p1@Lix1 | ||
}} | }} |
Revision as of 05:31, 15 November 2012
Short description: | p1@Lix1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lix1_5end |
Coexpression cluster: | MCL_coexpression_mm9:624 |
Association with transcript: | 0bp_to_ENSMUST00000172213, NM_025681, uc008apg.1_5end |
EntrezGene: | Lix1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.75e-12 | 23 |
neuroblast (sensu Vertebrata) | 8.75e-12 | 23 |
neural cell | 9.49e-11 | 43 |
ectodermal cell | 3.37e-10 | 44 |
neurectodermal cell | 3.37e-10 | 44 |
neuron | 3.35e-09 | 33 |
neuronal stem cell | 3.35e-09 | 33 |
neuroblast | 3.35e-09 | 33 |
electrically signaling cell | 3.35e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.64e-29 | 75 |
regional part of nervous system | 7.48e-29 | 54 |
central nervous system | 1.09e-28 | 73 |
neurectoderm | 1.12e-28 | 64 |
neural plate | 1.12e-28 | 64 |
presumptive neural plate | 1.12e-28 | 64 |
neural tube | 2.05e-27 | 52 |
neural rod | 2.05e-27 | 52 |
future spinal cord | 2.05e-27 | 52 |
neural keel | 2.05e-27 | 52 |
ectoderm-derived structure | 2.05e-25 | 95 |
ectoderm | 2.05e-25 | 95 |
presumptive ectoderm | 2.05e-25 | 95 |
brain | 1.53e-24 | 47 |
future brain | 1.53e-24 | 47 |
pre-chordal neural plate | 4.35e-24 | 49 |
regional part of brain | 1.22e-23 | 46 |
ecto-epithelium | 1.87e-22 | 73 |
anterior neural tube | 4.37e-22 | 40 |
gray matter | 1.49e-21 | 34 |
regional part of forebrain | 2.66e-21 | 39 |
forebrain | 2.66e-21 | 39 |
future forebrain | 2.66e-21 | 39 |
brain grey matter | 1.11e-18 | 29 |
regional part of telencephalon | 1.11e-18 | 29 |
telencephalon | 1.11e-18 | 29 |
structure with developmental contribution from neural crest | 1.76e-17 | 92 |
cerebral cortex | 1.64e-15 | 21 |
cerebral hemisphere | 1.64e-15 | 21 |
pallium | 1.64e-15 | 21 |
regional part of cerebral cortex | 1.47e-12 | 17 |
occipital lobe | 2.72e-09 | 10 |
visual cortex | 2.72e-09 | 10 |
neocortex | 2.72e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.