Coexpression cluster:C2855: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|full_id=C2855_Tracheal_blood_Hodgkin_carcinoid_CD4_Reticulocytes_chronic | |full_id=C2855_Tracheal_blood_Hodgkin_carcinoid_CD4_Reticulocytes_chronic | ||
|id=C2855 | |id=C2855 | ||
|ontology_enrichment_celltype=CL: | |ontology_enrichment_celltype=CL:0002242!1.21e-07!55;CL:0000542!6.58e-07!53;CL:0000051!6.58e-07!53 | ||
|ontology_enrichment_disease=DOID:162! | |ontology_enrichment_disease=DOID:162!5.26e-18!235;DOID:14566!1.92e-16!239;DOID:2531!1.96e-11!51;DOID:0060083!1.96e-11!51;DOID:0050686!5.01e-10!137;DOID:0050687!2.53e-09!143;DOID:1240!1.94e-07!39 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|tf_chipseq_enrich=BCL3#602;2:17.2735514018692:0.00483449420807607:0.0226813593548024!BCLAF1#9774;4:21.6526476101218:4.54636978835329e-06:0.000141821479786687!CTCF#10664;4:5.36025637307503:0.00121114538164362:0.00819559495357511!EGR1#1958;4:4.98817909481014:0.00161501150007605:0.0101626912126555!ETS1#2113;4:9.72876092220234:0.000111595531741814:0.00154779890299911!GABPB1#2553;3:5.30076287713663:0.0101267882423427:0.0378807892994997!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.0186552001214016!JUND#3727;4:6.99466394187103:0.00041768421781858:0.00392465335355418!POU2F2#5452;4:9.10612405774252:0.00014539566517493:0.00188727042943133!REST#5978;3:7.23752153709602:0.00410469730419261:0.0195945919075131!RXRA#6256;4:20.0746171391333:6.1537798808435e-06:0.000182583698004379!SRF#6722;3:10.3478836966259:0.00143989377840126:0.00924170761568641!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0323244272927976!TAF7#6879;4:11.4330694049239:5.85061525419808e-05:0.00097189821303196!TCF7L2#6934;3:8.07763242235301:0.00297838168583462:0.0158719871867987!USF1#7391;3:4.77112445790597:0.0137046588718802:0.0483384285011919!USF2#7392;4:12.9921973850696:3.50833029870167e-05:0.000682702642195088!ZBTB33#10009;4:31.6647250299812:9.93721537730495e-07:4.20856787019607e-05!ZBTB7A#51341;3:5.51393198090692:0.00903835282108109:0.0342571776549043!ZEB1#6935;4:16.8884320175439:1.22862303393937e-05:0.000305078842229182 | |tf_chipseq_enrich=BCL3#602;2:17.2735514018692:0.00483449420807607:0.0226813593548024!BCLAF1#9774;4:21.6526476101218:4.54636978835329e-06:0.000141821479786687!CTCF#10664;4:5.36025637307503:0.00121114538164362:0.00819559495357511!EGR1#1958;4:4.98817909481014:0.00161501150007605:0.0101626912126555!ETS1#2113;4:9.72876092220234:0.000111595531741814:0.00154779890299911!GABPB1#2553;3:5.30076287713663:0.0101267882423427:0.0378807892994997!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.0186552001214016!JUND#3727;4:6.99466394187103:0.00041768421781858:0.00392465335355418!POU2F2#5452;4:9.10612405774252:0.00014539566517493:0.00188727042943133!REST#5978;3:7.23752153709602:0.00410469730419261:0.0195945919075131!RXRA#6256;4:20.0746171391333:6.1537798808435e-06:0.000182583698004379!SRF#6722;3:10.3478836966259:0.00143989377840126:0.00924170761568641!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0323244272927976!TAF7#6879;4:11.4330694049239:5.85061525419808e-05:0.00097189821303196!TCF7L2#6934;3:8.07763242235301:0.00297838168583462:0.0158719871867987!USF1#7391;3:4.77112445790597:0.0137046588718802:0.0483384285011919!USF2#7392;4:12.9921973850696:3.50833029870167e-05:0.000682702642195088!ZBTB33#10009;4:31.6647250299812:9.93721537730495e-07:4.20856787019607e-05!ZBTB7A#51341;3:5.51393198090692:0.00903835282108109:0.0342571776549043!ZEB1#6935;4:16.8884320175439:1.22862303393937e-05:0.000305078842229182 | ||
|tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,5.15413e-07,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.0323255,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.00126533,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.0725724,0.00164905,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.00156695,0.0715789,0.0924421,0.00776853,0.255843,0.0508907,0.140644,6.48463e-14,0.103044,0.138225,0.0390464,0.00142551,0.142115,0.0999599,0.0720888,0.0667453,0.115055,0.0792005,0.113084,0.216289,0.133576,0.0892037,0.116917,0.000715246,0.00995563,0.0227583,0.126543,3.36951e-05,0.0493551,0.00965832,0.125428,0.005218,0.00161322,0.150119,8.7939e-06,0.320801,0.0848546,0.268505,0.355976,0.0827752,0.112676,0.0655645,1.19516e-05,8.95939e-09,0.112199,0.150351,0.690341,1.74803e-46,0.121709,5.18954e-17,0.0759036,4.12462e-11,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.00127811,0.34189,9.35968e-06,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,2.10214e-09,0.110194,0.215858,0.275495,0.182323,0.112709,1.59682e-05,0.0283927,0.119051,0.0196757,7.23336e-06,0.175735,0.078637,0.00502016,3.05201e-10,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.000279662,0.202388,0.701894,9.87988e-10,0.000401237,0.110696,0.0515825,0.157774,0.0035531,6.46356e-05,0.233377,0.0352845,0.00162914,1.42917e-28,0.0984158,1.4241e-10,0.0683304,0.0447121,1.36305e-21,0.124982,0.152417,0.0197458,0.346873,0.149398,0.0530169,0.0146311,0.0534404,0.392741,0.2321,0.179282,0.0103372,0.0715212,0.105131,2.37046e-07,0.00117512,0.234755,2.85031e-25,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.00286806,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.00409908,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.0616625,0.0094037,8.13354e-05,0.00387451,0.00246422,0.0606832,0.136664,1.09325e-06,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.00108189,5.9059e-05,0.0553945,0.10068,0.125804,0.00780206,0.0624687,0.334388,0.21183,1.18465e-06,0.235571,6.18193e-10,0.128998,0.00619501,0.151958,0.178155,0.107176,6.20688e-25,0.463127,0.15291,4.52074e-06,0.238926,0.239646,0.128521,0.1286,0.0230819,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,5.20503e-06,1.45987e-06,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.0711631,0.00358623,0.324356,0.18736,0.113754,0.0504034,0.169684,0.327364,0.810881,0.869559,0.389734,0.668426,0.901171,0.644298,0.018014,0.381628,0.000807236,0.186966,0.464128,0.0138826,4.833e-07,0.017212,0.489273,0.413223,0.639461,0.720642,0.34505,0.369161,0.153719,0.000668879,4.02938e-26,0.341822,0.241524,0.45167,0.0299727,0.520726,0.0108883,0.41477,0.00462477,9.71789e-08,5.111e-05,0.563725,0.0526663,0.632838,9.33444e-08,1.72639e-13,1.96994e-11,0.586668,0.322903,0.350886,0.0128438,0.583749,1.54946e-05,0.0455719,0.606558,0.34907,0.0105546,0.395864,0.683133,0.0115272,0.000175326,0.682118,0.00630994,0.369971,0.578349,0.181193,0.464342,0.0295245,0.131933,0.235444,0.804772,0.899283,0.00287093,1.95972e-08,0.302142,0.00279097,0.000305093,0.000666907,4.07934e-25,0.730486,0.606382,0.617741,0.258511,0.0069534,0.356561,0.210197,0.211506,0.0883859,0.00478831,0.238465,0.70198,0.128535,0.323783,0.159267,0.436735,0.651927,1.23246e-25,0.54723,0.280307,1.34645e-20,0.212518,0.0596868,0.00500916,0.293026,0.16661,0.694744,0.0678767,0.372182,0.429205,3.61728e-06,0.365653,0.41035,0.784024,0.35234,0.888839,0.525923,0.291917,0.00241173,0.25441,0.202782,0.000163656,0.517933,0.219758,0.517001,0.620475,0.483999,0.419676,0.188259,0.189182,0.0282651,0.46699,0.000173144,0.00992491,0.321282,0.00152374,0.0616078,0.178485,0.00793151,0.0163996,0.129238,0.283924,0.370995,0.360161,0.429696,0.00160583,0.0861729,0.706685,0.606408,0.0778663,0.00116279,0.333725,3.67396e-05,0.000434367,0.00559598,0.513045,2.53327e-07,0.565545,0.845507,3.98131e-08,0.0791459,0.754776,0.53531,0.341771,0.424526,0.0939249,0.0727712,0.184395,0.55524,0.0766597,7.33538e-34,3.90864e-05,0.000460135,0.296994,0.000205378,0.117049,0.00317462,0.261511,0.144936,0.433821,0.276604,0.436806,0.21267,0.152784,0.0498754,0.0115505,0.397546,0.0919254,0.0735469,0.248103,0.102621,3.09529e-16,0.187642,0.286156,0.0377469,0.541583,0.0442046,0.247151,0.146385,0.365815,0.0576261,2.5072e-09,0.164977,0.175633,0.139918,0.0685737,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,1.92311e-05,0.0580534,0.00518407,0.161297,4.66193e-08,0.00411807,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.000978043,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.000183439,0.219023,0.115115,0.124916,0.0149794,0.00490213,0.140114,0.0695559,4.41592e-08,0.224626,0.183585,0.00419343,0.03989,0.171436,0.05892,0.0691994,0.0397278,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.0734014,0.0752771,0.178782,0.019419,0.0866228,0.0408454,0.000389609,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.0593965,0.220368,0.258624,0.064656,0.226143,3.9433e-06,0.0438521,1.70837e-07,0.281453,0.0522771,0.0787278,0.00648069,0.159873,2.05643e-05,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.00489168,0.302909,0.363016,0.100188,0.00222156,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.458838,0.189107,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.00103527,0.535567,0.415079,0.278645,0.365775,0.155708,0.000219214,0.22995,0.000795073,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.108863,0.974549,0.265324,0.279778,0.141699,0.0887743,0.142302,0.00218185,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.00180935,0.071232,0.149346,0.121978,0.22302,0.137423,0.0448074,0.0754883,0.299492,0.100006,0.0109294,8.2505e-05,0.251078,0.279874,0.133127,0.410303,0.223717,0.000279277,0.196838,0.0826805,0.0332683,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.0205193,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,1.31315e-17,0.364334,6.73285e-10,0.110256,0.415419,0.14794,0.00059876,0.240761,0.225961,0.124417,0.335582,0.00699002,0.182843,0.130771,6.75258e-13,0.135777,0.147842,0.0339286,1.72486e-13,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,1.54698e-07,0.0896967,0.248134,0.0780061,0.315336,0.028874,0.279823,0.00552386,0.502112,0.369553,0.0478217,0.507599,1.23895e-14,0.0575231,0.174063,0.514243,0.459091,0.54832,0.154964,1.42299e-16,0.649813,1.34383e-07,0.127256,0.0392766,0.189126,3.40446e-11,0.490559,0.00332016,0.00559995,0.472542,3.66192e-06,0.747471,0.529642,0.818701,0.483077,0.224887,0.0671621,0.0446875,0.00346025,0.765905,0.0594404,0.000441322,0.00328655,0.138899,0.478691,0.0744652,0.0153629,0.290133,0.824761,1.07798e-13,0.212703,2.58105e-05,0.364079,0.680099,0.579886,1.21618e-07,0.569409,0.000763941,8.95866e-10,4.35278e-05,0.324103,3.67746e-08,0.528161,0.784052,0.209437,0.843495,0.401218,0.598945,0.630688,4.80168e-05,0.336867,0.579004,0.334776,0.839946,0.860705,0.261575,0.257956,0.264245,0.379063,0.326516,1.15939e-06,0.0205071,0.475063,0.202522,0.183837,0.507324,0.0083072,6.54201e-08,0.442469,0.212239,0.294954,0.156999,0.35974,0.667777,0.39549,0.234254,0.357409,0.146291,0.00995016,0.15578,0.620526,0.404625,0.0563812,0.000272349,0.715362,0.479581,8.70419e-09,0.884725,0.642173,0.284496,0.512545,0.162017,0.563206,0.034169,0.321001,0.263302,0.552023,0.180735,0.775168,0.216102,0.00340007,0.109605,0.000183912,0.582542,3.73667e-10,0.417131,0.463987,0.627953,6.00185e-08,0.124057,0.639483,0.483658,0.452129,0.301581,0.261657,5.75731e-06,0.466529,0.545655,0.114247,0.00959742,0.0124698,0.385425,0.307816,0.461541,0.386339,0.382854,0.598787,0.478745,0.611661,0.319747,0.475047,0.0498053,0.608127,0.282281,0.612712,0.2536,0.246827,0.564333,0.70712,0.387134,0.559969,0.358813,0.000992912,0.00187124,0.493455,1.40892e-12,0.125876,0.348802,0.476541,0.579645,8.35239e-37,0.42505,1.01373e-12,0.713293,0.479347,0.416962,0.00368966,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.0383658,0.0446972,1.14442e-05,0.00789472,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.325254,0.266651,0.546295,0.231754,0.249415,0.283107,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,1.39633e-06,0.251421,0.162089,0.330223,0.0016375,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,7.57497e-07,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.0149493,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.000828779,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.00214888,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.000150337,0.203996,0.276721,0.321965,0.264707,0.00331953 | |tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,5.15413e-07,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.0323255,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.00126533,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.0725724,0.00164905,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.00156695,0.0715789,0.0924421,0.00776853,0.255843,0.0508907,0.140644,6.48463e-14,0.103044,0.138225,0.0390464,0.00142551,0.142115,0.0999599,0.0720888,0.0667453,0.115055,0.0792005,0.113084,0.216289,0.133576,0.0892037,0.116917,0.000715246,0.00995563,0.0227583,0.126543,3.36951e-05,0.0493551,0.00965832,0.125428,0.005218,0.00161322,0.150119,8.7939e-06,0.320801,0.0848546,0.268505,0.355976,0.0827752,0.112676,0.0655645,1.19516e-05,8.95939e-09,0.112199,0.150351,0.690341,1.74803e-46,0.121709,5.18954e-17,0.0759036,4.12462e-11,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.00127811,0.34189,9.35968e-06,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,2.10214e-09,0.110194,0.215858,0.275495,0.182323,0.112709,1.59682e-05,0.0283927,0.119051,0.0196757,7.23336e-06,0.175735,0.078637,0.00502016,3.05201e-10,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.000279662,0.202388,0.701894,9.87988e-10,0.000401237,0.110696,0.0515825,0.157774,0.0035531,6.46356e-05,0.233377,0.0352845,0.00162914,1.42917e-28,0.0984158,1.4241e-10,0.0683304,0.0447121,1.36305e-21,0.124982,0.152417,0.0197458,0.346873,0.149398,0.0530169,0.0146311,0.0534404,0.392741,0.2321,0.179282,0.0103372,0.0715212,0.105131,2.37046e-07,0.00117512,0.234755,2.85031e-25,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.00286806,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.00409908,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.0616625,0.0094037,8.13354e-05,0.00387451,0.00246422,0.0606832,0.136664,1.09325e-06,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.00108189,5.9059e-05,0.0553945,0.10068,0.125804,0.00780206,0.0624687,0.334388,0.21183,1.18465e-06,0.235571,6.18193e-10,0.128998,0.00619501,0.151958,0.178155,0.107176,6.20688e-25,0.463127,0.15291,4.52074e-06,0.238926,0.239646,0.128521,0.1286,0.0230819,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,5.20503e-06,1.45987e-06,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.0711631,0.00358623,0.324356,0.18736,0.113754,0.0504034,0.169684,0.327364,0.810881,0.869559,0.389734,0.668426,0.901171,0.644298,0.018014,0.381628,0.000807236,0.186966,0.464128,0.0138826,4.833e-07,0.017212,0.489273,0.413223,0.639461,0.720642,0.34505,0.369161,0.153719,0.000668879,4.02938e-26,0.341822,0.241524,0.45167,0.0299727,0.520726,0.0108883,0.41477,0.00462477,9.71789e-08,5.111e-05,0.563725,0.0526663,0.632838,9.33444e-08,1.72639e-13,1.96994e-11,0.586668,0.322903,0.350886,0.0128438,0.583749,1.54946e-05,0.0455719,0.606558,0.34907,0.0105546,0.395864,0.683133,0.0115272,0.000175326,0.682118,0.00630994,0.369971,0.578349,0.181193,0.464342,0.0295245,0.131933,0.235444,0.804772,0.899283,0.00287093,1.95972e-08,0.302142,0.00279097,0.000305093,0.000666907,4.07934e-25,0.730486,0.606382,0.617741,0.258511,0.0069534,0.356561,0.210197,0.211506,0.0883859,0.00478831,0.238465,0.70198,0.128535,0.323783,0.159267,0.436735,0.651927,1.23246e-25,0.54723,0.280307,1.34645e-20,0.212518,0.0596868,0.00500916,0.293026,0.16661,0.694744,0.0678767,0.372182,0.429205,3.61728e-06,0.365653,0.41035,0.784024,0.35234,0.888839,0.525923,0.291917,0.00241173,0.25441,0.202782,0.000163656,0.517933,0.219758,0.517001,0.620475,0.483999,0.419676,0.188259,0.189182,0.0282651,0.46699,0.000173144,0.00992491,0.321282,0.00152374,0.0616078,0.178485,0.00793151,0.0163996,0.129238,0.283924,0.370995,0.360161,0.429696,0.00160583,0.0861729,0.706685,0.606408,0.0778663,0.00116279,0.333725,3.67396e-05,0.000434367,0.00559598,0.513045,2.53327e-07,0.565545,0.845507,3.98131e-08,0.0791459,0.754776,0.53531,0.341771,0.424526,0.0939249,0.0727712,0.184395,0.55524,0.0766597,7.33538e-34,3.90864e-05,0.000460135,0.296994,0.000205378,0.117049,0.00317462,0.261511,0.144936,0.433821,0.276604,0.436806,0.21267,0.152784,0.0498754,0.0115505,0.397546,0.0919254,0.0735469,0.248103,0.102621,3.09529e-16,0.187642,0.286156,0.0377469,0.541583,0.0442046,0.247151,0.146385,0.365815,0.0576261,2.5072e-09,0.164977,0.175633,0.139918,0.0685737,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,1.92311e-05,0.0580534,0.00518407,0.161297,4.66193e-08,0.00411807,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.000978043,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.000183439,0.219023,0.115115,0.124916,0.0149794,0.00490213,0.140114,0.0695559,4.41592e-08,0.224626,0.183585,0.00419343,0.03989,0.171436,0.05892,0.0691994,0.0397278,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.0734014,0.0752771,0.178782,0.019419,0.0866228,0.0408454,0.000389609,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.0593965,0.220368,0.258624,0.064656,0.226143,3.9433e-06,0.0438521,1.70837e-07,0.281453,0.0522771,0.0787278,0.00648069,0.159873,2.05643e-05,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.00489168,0.302909,0.363016,0.100188,0.00222156,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.458838,0.189107,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.00103527,0.535567,0.415079,0.278645,0.365775,0.155708,0.000219214,0.22995,0.000795073,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.108863,0.974549,0.265324,0.279778,0.141699,0.0887743,0.142302,0.00218185,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.00180935,0.071232,0.149346,0.121978,0.22302,0.137423,0.0448074,0.0754883,0.299492,0.100006,0.0109294,8.2505e-05,0.251078,0.279874,0.133127,0.410303,0.223717,0.000279277,0.196838,0.0826805,0.0332683,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.0205193,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,1.31315e-17,0.364334,6.73285e-10,0.110256,0.415419,0.14794,0.00059876,0.240761,0.225961,0.124417,0.335582,0.00699002,0.182843,0.130771,6.75258e-13,0.135777,0.147842,0.0339286,1.72486e-13,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,1.54698e-07,0.0896967,0.248134,0.0780061,0.315336,0.028874,0.279823,0.00552386,0.502112,0.369553,0.0478217,0.507599,1.23895e-14,0.0575231,0.174063,0.514243,0.459091,0.54832,0.154964,1.42299e-16,0.649813,1.34383e-07,0.127256,0.0392766,0.189126,3.40446e-11,0.490559,0.00332016,0.00559995,0.472542,3.66192e-06,0.747471,0.529642,0.818701,0.483077,0.224887,0.0671621,0.0446875,0.00346025,0.765905,0.0594404,0.000441322,0.00328655,0.138899,0.478691,0.0744652,0.0153629,0.290133,0.824761,1.07798e-13,0.212703,2.58105e-05,0.364079,0.680099,0.579886,1.21618e-07,0.569409,0.000763941,8.95866e-10,4.35278e-05,0.324103,3.67746e-08,0.528161,0.784052,0.209437,0.843495,0.401218,0.598945,0.630688,4.80168e-05,0.336867,0.579004,0.334776,0.839946,0.860705,0.261575,0.257956,0.264245,0.379063,0.326516,1.15939e-06,0.0205071,0.475063,0.202522,0.183837,0.507324,0.0083072,6.54201e-08,0.442469,0.212239,0.294954,0.156999,0.35974,0.667777,0.39549,0.234254,0.357409,0.146291,0.00995016,0.15578,0.620526,0.404625,0.0563812,0.000272349,0.715362,0.479581,8.70419e-09,0.884725,0.642173,0.284496,0.512545,0.162017,0.563206,0.034169,0.321001,0.263302,0.552023,0.180735,0.775168,0.216102,0.00340007,0.109605,0.000183912,0.582542,3.73667e-10,0.417131,0.463987,0.627953,6.00185e-08,0.124057,0.639483,0.483658,0.452129,0.301581,0.261657,5.75731e-06,0.466529,0.545655,0.114247,0.00959742,0.0124698,0.385425,0.307816,0.461541,0.386339,0.382854,0.598787,0.478745,0.611661,0.319747,0.475047,0.0498053,0.608127,0.282281,0.612712,0.2536,0.246827,0.564333,0.70712,0.387134,0.559969,0.358813,0.000992912,0.00187124,0.493455,1.40892e-12,0.125876,0.348802,0.476541,0.579645,8.35239e-37,0.42505,1.01373e-12,0.713293,0.479347,0.416962,0.00368966,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.0383658,0.0446972,1.14442e-05,0.00789472,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.325254,0.266651,0.546295,0.231754,0.249415,0.283107,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,1.39633e-06,0.251421,0.162089,0.330223,0.0016375,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,7.57497e-07,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.0149493,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.000828779,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.00214888,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.000150337,0.203996,0.276721,0.321965,0.264707,0.00331953 | ||
}} | }} | ||
Revision as of 14:30, 19 October 2012
Full id: C2855_Tracheal_blood_Hodgkin_carcinoid_CD4_Reticulocytes_chronic
Phase1 CAGE Peaks
| Hg19::chr6:26056231..26056264,+ | p2@CU678091 |
| Hg19::chr6:26157017..26157056,- | p@chr6:26157017..26157056 - |
| Hg19::chr6:26157065..26157123,- | p@chr6:26157065..26157123 - |
| Hg19::chr6:26157179..26157224,- | p@chr6:26157179..26157224 - |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| nucleate cell | 1.21e-07 | 55 |
| lymphocyte | 6.58e-07 | 53 |
| common lymphoid progenitor | 6.58e-07 | 53 |
| Ontology term | p-value | n |
|---|---|---|
| cancer | 5.26e-18 | 235 |
| disease of cellular proliferation | 1.92e-16 | 239 |
| hematologic cancer | 1.96e-11 | 51 |
| immune system cancer | 1.96e-11 | 51 |
| organ system cancer | 5.01e-10 | 137 |
| cell type cancer | 2.53e-09 | 143 |
| leukemia | 1.94e-07 | 39 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| BCL3#602 | 2 | 17.2735514018692 | 0.00483449420807607 | 0.0226813593548024 |
| BCLAF1#9774 | 4 | 21.6526476101218 | 4.54636978835329e-06 | 0.000141821479786687 |
| CTCF#10664 | 4 | 5.36025637307503 | 0.00121114538164362 | 0.00819559495357511 |
| EGR1#1958 | 4 | 4.98817909481014 | 0.00161501150007605 | 0.0101626912126555 |
| ETS1#2113 | 4 | 9.72876092220234 | 0.000111595531741814 | 0.00154779890299911 |
| GABPB1#2553 | 3 | 5.30076287713663 | 0.0101267882423427 | 0.0378807892994997 |
| HEY1#23462 | 4 | 4.04011104310571 | 0.0037530463691798 | 0.0186552001214016 |
| JUND#3727 | 4 | 6.99466394187103 | 0.00041768421781858 | 0.00392465335355418 |
| POU2F2#5452 | 4 | 9.10612405774252 | 0.00014539566517493 | 0.00188727042943133 |
| REST#5978 | 3 | 7.23752153709602 | 0.00410469730419261 | 0.0195945919075131 |
| RXRA#6256 | 4 | 20.0746171391333 | 6.1537798808435e-06 | 0.000182583698004379 |
| SRF#6722 | 3 | 10.3478836966259 | 0.00143989377840126 | 0.00924170761568641 |
| TAF1#6872 | 4 | 3.34304628574529 | 0.00800566489870165 | 0.0323244272927976 |
| TAF7#6879 | 4 | 11.4330694049239 | 5.85061525419808e-05 | 0.00097189821303196 |
| TCF7L2#6934 | 3 | 8.07763242235301 | 0.00297838168583462 | 0.0158719871867987 |
| USF1#7391 | 3 | 4.77112445790597 | 0.0137046588718802 | 0.0483384285011919 |
| USF2#7392 | 4 | 12.9921973850696 | 3.50833029870167e-05 | 0.000682702642195088 |
| ZBTB33#10009 | 4 | 31.6647250299812 | 9.93721537730495e-07 | 4.20856787019607e-05 |
| ZBTB7A#51341 | 3 | 5.51393198090692 | 0.00903835282108109 | 0.0342571776549043 |
| ZEB1#6935 | 4 | 16.8884320175439 | 1.22862303393937e-05 | 0.000305078842229182 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
