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|coexpression_dpi_cluster_scores_median=0.105424733819392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257056954190279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548343044513086,0.652919699170024,0.443172259876706,0,0,0,0,0,0,0,0.338759694545187,0.412177018513769,0.182467172639331,0.385294277714033,0.405872009044185,0.533499299817881,0.4048107457239,0.433629898614032,0.619115396805057,0.689195218919697,0.572169713869289,0.611624361209195,0.61741669133723,0.615609224684611,0.408788184580503,0.512023707637857,0.61423968371794,0.442130235059405,0.495869081015894,0.534431359483567,0,0,0,0,0,0,0,0,0.00908761387703595,0,0,0,0.0538909624869545,0,0,0,0,0,0,0.028035076469379,0,0,0.0694776635602275,0,0.0706729314400179,0,0.0458646709052479,0,0,0,0,0,0,0,0,0.111524892460631,0.0631372878644465,0,0,0,0,0.556893784314817,0.550737710472616,0.665115880137317,0.794813854629347,0.837680306962151,0.540160520722151,0.677330420042315,0.0016096934108927,0,0,0.00136440292997397,0.0531247310291112,0.0898705446131073,0.110289628825043,0.0609639314262262,0.0419961661963089,0.0796188272829727,0.122913243830266,0.121063253750079,0,0.0181608514240087,0.0703892716151147,0.0860734338295156,0.106546909924599,0,0,0,0,0,0,0,0.0457501310086346,0.0719048481885784,0.0278026103773391,0,0.0623063220167371,0,0,0.0239809638088447,0,0,0,0,0,0,1.15043723938181,0.962024122819192,0,0,0,0.128187800254637,0.0526429550379996,0.0735856375862305,0.0872055405749939,0.0677176223693023,0,0,0.0970111371586003,0,0,0,0,0,0.0377128719094677,0.0234910315133595,0,0.0356101780758858,0.0078202255324354,0.0508806415150929,0.00573495820161265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0697794283425175,0.0655666358230307,0.0486417808928005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342948867061137,0.379937151807812,0,0,0.119093565942036,0,0.0847275925579778,0,0,0,0,0,0,0.469722251798513,0,0,0,0,0,0,0.057359448163414,0,0,0,0,0,0,0,0,0,0.063623625691065,0.134297870972791,0.0771894521478566,0.0843392403965415,0.185264633597857,0.143079293137351,0.174247988899791,0.115432414129512,0,0,0,0,0,0.00135976512118899,0,0,0,0.221524204608823,0,0,0,0,0,0,0,0,0,0,0.0318857800356453,0,0.0250924053319246,0,0,0,0,0,0,0,0,0,0.0332484050430722,0.0385842034280588,0,0,0.0240960234281546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739496265270492,0.671399355046651,0.608632847137968,0.700720945442388,0.78186209319022,0.892013586769674,0.807645686291453,0.734667218963858,0.807652788194041,0.688093562007958,0.0968438500814827,0.260623935736934,0.309855232084557,0.246988707557359,0.20825205368019,0.163373524380168,0.202418457484638,0.179431503765693,0.267533082129387,0.0978461107777356,0.245620709720879,0.328737911309532,0.152476528059989,0.178046946964521,0.25581310097294,0.210442172782852,0.197325942129533,0.21748428053425,0.074930558382725,0.269522217684123,0.177411968389294,0.182447658702885,0.262605041794014,0.218131378243292,0.223682138248805,0.262121358364233,0.214233234911356,0.282448737636239,0.148421355017489,0.193442483447008,0.196157198379137,0.201677520895557,0.148982201447044,0.168164918254148,0.109155573003225,0.271881217361352,0.207315335725477,0.216063761676531,0.0185589956220353,0,0
|coexpression_dpi_cluster_scores_median=0.105424733819392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257056954190279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548343044513086,0.652919699170024,0.443172259876706,0,0,0,0,0,0,0,0.338759694545187,0.412177018513769,0.182467172639331,0.385294277714033,0.405872009044185,0.533499299817881,0.4048107457239,0.433629898614032,0.619115396805057,0.689195218919697,0.572169713869289,0.611624361209195,0.61741669133723,0.615609224684611,0.408788184580503,0.512023707637857,0.61423968371794,0.442130235059405,0.495869081015894,0.534431359483567,0,0,0,0,0,0,0,0,0.00908761387703595,0,0,0,0.0538909624869545,0,0,0,0,0,0,0.028035076469379,0,0,0.0694776635602275,0,0.0706729314400179,0,0.0458646709052479,0,0,0,0,0,0,0,0,0.111524892460631,0.0631372878644465,0,0,0,0,0.556893784314817,0.550737710472616,0.665115880137317,0.794813854629347,0.837680306962151,0.540160520722151,0.677330420042315,0.0016096934108927,0,0,0.00136440292997397,0.0531247310291112,0.0898705446131073,0.110289628825043,0.0609639314262262,0.0419961661963089,0.0796188272829727,0.122913243830266,0.121063253750079,0,0.0181608514240087,0.0703892716151147,0.0860734338295156,0.106546909924599,0,0,0,0,0,0,0,0.0457501310086346,0.0719048481885784,0.0278026103773391,0,0.0623063220167371,0,0,0.0239809638088447,0,0,0,0,0,0,1.15043723938181,0.962024122819192,0,0,0,0.128187800254637,0.0526429550379996,0.0735856375862305,0.0872055405749939,0.0677176223693023,0,0,0.0970111371586003,0,0,0,0,0,0.0377128719094677,0.0234910315133595,0,0.0356101780758858,0.0078202255324354,0.0508806415150929,0.00573495820161265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0697794283425175,0.0655666358230307,0.0486417808928005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342948867061137,0.379937151807812,0,0,0.119093565942036,0,0.0847275925579778,0,0,0,0,0,0,0.469722251798513,0,0,0,0,0,0,0.057359448163414,0,0,0,0,0,0,0,0,0,0.063623625691065,0.134297870972791,0.0771894521478566,0.0843392403965415,0.185264633597857,0.143079293137351,0.174247988899791,0.115432414129512,0,0,0,0,0,0.00135976512118899,0,0,0,0.221524204608823,0,0,0,0,0,0,0,0,0,0,0.0318857800356453,0,0.0250924053319246,0,0,0,0,0,0,0,0,0,0.0332484050430722,0.0385842034280588,0,0,0.0240960234281546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739496265270492,0.671399355046651,0.608632847137968,0.700720945442388,0.78186209319022,0.892013586769674,0.807645686291453,0.734667218963858,0.807652788194041,0.688093562007958,0.0968438500814827,0.260623935736934,0.309855232084557,0.246988707557359,0.20825205368019,0.163373524380168,0.202418457484638,0.179431503765693,0.267533082129387,0.0978461107777356,0.245620709720879,0.328737911309532,0.152476528059989,0.178046946964521,0.25581310097294,0.210442172782852,0.197325942129533,0.21748428053425,0.074930558382725,0.269522217684123,0.177411968389294,0.182447658702885,0.262605041794014,0.218131378243292,0.223682138248805,0.262121358364233,0.214233234911356,0.282448737636239,0.148421355017489,0.193442483447008,0.196157198379137,0.201677520895557,0.148982201447044,0.168164918254148,0.109155573003225,0.271881217361352,0.207315335725477,0.216063761676531,0.0185589956220353,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!6.24e-17!23;CL:0000337!6.24e-17!23;CL:0000540!1.88e-11!33;CL:0000047!1.88e-11!33;CL:0000031!1.88e-11!33;CL:0000404!1.88e-11!33;CL:0000393!3.75e-08!39;CL:0000211!3.75e-08!39
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!3.56e-30!54;UBERON:0002346!6.99e-30!64;UBERON:0003075!6.99e-30!64;UBERON:0007284!6.99e-30!64;UBERON:0001049!3.98e-28!52;UBERON:0005068!3.98e-28!52;UBERON:0006241!3.98e-28!52;UBERON:0007135!3.98e-28!52;UBERON:0001017!7.03e-26!73;UBERON:0010371!8.08e-26!73;UBERON:0003056!9.29e-26!49;UBERON:0000955!1.14e-24!47;UBERON:0006238!1.14e-24!47;UBERON:0001016!1.58e-24!75;UBERON:0003080!3.75e-24!40;UBERON:0002616!6.15e-24!46;UBERON:0002780!2.30e-23!39;UBERON:0001890!2.30e-23!39;UBERON:0006240!2.30e-23!39;UBERON:0002020!4.38e-23!34;UBERON:0004121!3.45e-22!95;UBERON:0000924!3.45e-22!95;UBERON:0006601!3.45e-22!95;UBERON:0010314!2.02e-20!92;UBERON:0003528!1.27e-19!29;UBERON:0002791!1.27e-19!29;UBERON:0001893!1.27e-19!29;UBERON:0000956!1.34e-13!21;UBERON:0001869!1.34e-13!21;UBERON:0000203!1.34e-13!21;UBERON:0002619!3.76e-11!17;UBERON:0002021!7.24e-10!10;UBERON:0000411!7.24e-10!10;UBERON:0001950!7.24e-10!10;UBERON:0002420!2.98e-07!8;UBERON:0007245!2.98e-07!8;UBERON:0010009!2.98e-07!8;UBERON:0010011!2.98e-07!8;UBERON:0000454!2.98e-07!8
}}
}}

Revision as of 21:07, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:36491274..36491288,-p6@Odz2
Mm9::chr14:122138275..122138292,-p13@Dock9
Mm9::chr3:152636592..152636604,-p@chr3:152636592..152636604
-
Mm9::chr3:152645151..152645180,-p1@St6galnac5
Mm9::chr3:152645204..152645215,-p2@St6galnac5
Mm9::chr3:54719736..54719749,-p3@6030405A18Rik
Mm9::chr3:54719789..54719806,-p1@6030405A18Rik
Mm9::chr3:54719907..54719943,-p2@6030405A18Rik
Mm9::chr6:138369900..138369926,-p5@Lmo3
Mm9::chr7:3390971..3391049,+p@chr7:3390971..3391049
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)6.24e-1723
neuroblast (sensu Vertebrata)6.24e-1723
neuron1.88e-1133
neuronal stem cell1.88e-1133
neuroblast1.88e-1133
electrically signaling cell1.88e-1133
electrically responsive cell3.75e-0839
electrically active cell3.75e-0839

Uber Anatomy
Ontology termp-valuen
regional part of nervous system3.56e-3054
neurectoderm6.99e-3064
neural plate6.99e-3064
presumptive neural plate6.99e-3064
neural tube3.98e-2852
neural rod3.98e-2852
future spinal cord3.98e-2852
neural keel3.98e-2852
central nervous system7.03e-2673
ecto-epithelium8.08e-2673
pre-chordal neural plate9.29e-2649
brain1.14e-2447
future brain1.14e-2447
nervous system1.58e-2475
anterior neural tube3.75e-2440
regional part of brain6.15e-2446
regional part of forebrain2.30e-2339
forebrain2.30e-2339
future forebrain2.30e-2339
gray matter4.38e-2334
ectoderm-derived structure3.45e-2295
ectoderm3.45e-2295
presumptive ectoderm3.45e-2295
structure with developmental contribution from neural crest2.02e-2092
brain grey matter1.27e-1929
regional part of telencephalon1.27e-1929
telencephalon1.27e-1929
cerebral cortex1.34e-1321
cerebral hemisphere1.34e-1321
pallium1.34e-1321
regional part of cerebral cortex3.76e-1117
occipital lobe7.24e-1010
visual cortex7.24e-1010
neocortex7.24e-1010
basal ganglion2.98e-078
nuclear complex of neuraxis2.98e-078
aggregate regional part of brain2.98e-078
collection of basal ganglia2.98e-078
cerebral subcortex2.98e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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