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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223162493655347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178992723219136,0.136933887794739,0.142658407030909,0.0820502169770604,0.193474596664669,0,0,0,0,0,0,0.582868280369388,0.561692158611993,0.541334980017963,0,0,0,0,0,0.203902841136986,0.123794748603148,0.884614061002654,1.01255460642583,0.916463489265396,0.477057103358911,0.247874456080722,0.808655082084772,0.797320766308532,0.813935265660789,0.161229439267587,0.196811040770603,0.208018178957679,0.412063108447055,0.407161651952206,0.556853084659377,0.321855166838861,0.327466262382121,0.20714756397787,0.338160423388235,0.40860216393746,0.542249918339554,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.668505396716728,0.731936404030401,0,0,0,0,0.161179842546876,0.328687801934592,0.6425505730408,0.524460979038496,0.581252001722494,0.236570192217746,0.376151087228995,0,0,0,0.0414719663749819,0,0,0.160575934061045,0.312797819693318,0.444713403716786,0.574482524579768,0.524077017743623,0.249469886918853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656215413544525,0.864755265347679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254207060770644,0.27203765721854,0,0,0,0,0.0423637962789889,0.0465301846457956,0,0.108252561213616,0,0,0,0.655439606806677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719044921483595,0,0.0421696201982708,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262941939391299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.668604287949998,0.690848803504111,0.697003168884831,0.694835287192439,0.609431848860291,0.673653467210757,0.672146106418886,0.679449787383562,0.542193534804327,0.683141369918527,0.210244682285048,0.378083069883878,0.357725973680768,0.0945084131504676,0.117349081168505,0.187689909581142,0.159715578577694,0.258270141331292,0.254098544009111,0.245041507634362,0.211861015478982,0.219456453609925,0.242822600021565,0.214579344970772,0.2492342134867,0.229891621240312,0.243606083456369,0.198307218446548,0.20546342740088,0.179955924056412,0.226790206858766,0.158651849966934,0.262605041794014,0.272324055573331,0.231767997248789,0.199558798730838,0.238475639215048,0.218127658883024,0.168424100289374,0.260123047271308,0.202263507572545,0.186017310569498,0.204343226098226,0.209447282040344,0.109155573003225,0.556734308435111,0.230907198759394,0.185660734839627,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223162493655347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178992723219136,0.136933887794739,0.142658407030909,0.0820502169770604,0.193474596664669,0,0,0,0,0,0,0.582868280369388,0.561692158611993,0.541334980017963,0,0,0,0,0,0.203902841136986,0.123794748603148,0.884614061002654,1.01255460642583,0.916463489265396,0.477057103358911,0.247874456080722,0.808655082084772,0.797320766308532,0.813935265660789,0.161229439267587,0.196811040770603,0.208018178957679,0.412063108447055,0.407161651952206,0.556853084659377,0.321855166838861,0.327466262382121,0.20714756397787,0.338160423388235,0.40860216393746,0.542249918339554,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.668505396716728,0.731936404030401,0,0,0,0,0.161179842546876,0.328687801934592,0.6425505730408,0.524460979038496,0.581252001722494,0.236570192217746,0.376151087228995,0,0,0,0.0414719663749819,0,0,0.160575934061045,0.312797819693318,0.444713403716786,0.574482524579768,0.524077017743623,0.249469886918853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656215413544525,0.864755265347679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254207060770644,0.27203765721854,0,0,0,0,0.0423637962789889,0.0465301846457956,0,0.108252561213616,0,0,0,0.655439606806677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719044921483595,0,0.0421696201982708,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262941939391299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.668604287949998,0.690848803504111,0.697003168884831,0.694835287192439,0.609431848860291,0.673653467210757,0.672146106418886,0.679449787383562,0.542193534804327,0.683141369918527,0.210244682285048,0.378083069883878,0.357725973680768,0.0945084131504676,0.117349081168505,0.187689909581142,0.159715578577694,0.258270141331292,0.254098544009111,0.245041507634362,0.211861015478982,0.219456453609925,0.242822600021565,0.214579344970772,0.2492342134867,0.229891621240312,0.243606083456369,0.198307218446548,0.20546342740088,0.179955924056412,0.226790206858766,0.158651849966934,0.262605041794014,0.272324055573331,0.231767997248789,0.199558798730838,0.238475639215048,0.218127658883024,0.168424100289374,0.260123047271308,0.202263507572545,0.186017310569498,0.204343226098226,0.209447282040344,0.109155573003225,0.556734308435111,0.230907198759394,0.185660734839627,0,0,0
|gostat_on_MCL_coexpression=GO:0002209;behavioral defense response;0.0108886210485948;18013!GO:0001662;behavioral fear response;0.0108886210485948;18013!GO:0008306;associative learning;0.0108886210485948;18013!GO:0042596;fear response;0.0108886210485948;18013!GO:0033555;multicellular organismal response to stress;0.0145181613981263;18013!GO:0007612;learning;0.023712996950273;18013!GO:0007611;learning and/or memory;0.0282067135735026;18013!
|gostat_on_MCL_coexpression=GO:0002209;behavioral defense response;0.0108886210485948;18013!GO:0001662;behavioral fear response;0.0108886210485948;18013!GO:0008306;associative learning;0.0108886210485948;18013!GO:0042596;fear response;0.0108886210485948;18013!GO:0033555;multicellular organismal response to stress;0.0145181613981263;18013!GO:0007612;learning;0.023712996950273;18013!GO:0007611;learning and/or memory;0.0282067135735026;18013!
|ontology_enrichment_celltype=CL:0000117!2.10e-19!23;CL:0000337!2.10e-19!23;CL:0002319!1.85e-14!43;CL:0000221!6.93e-14!44;CL:0000133!6.93e-14!44;CL:0000540!9.97e-14!33;CL:0000047!9.97e-14!33;CL:0000031!9.97e-14!33;CL:0000404!9.97e-14!33;CL:0000055!2.10e-11!49;CL:0000393!2.79e-10!39;CL:0000211!2.79e-10!39;CL:0002609!5.47e-08!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!4.07e-33!73;UBERON:0002346!1.97e-32!64;UBERON:0003075!1.97e-32!64;UBERON:0007284!1.97e-32!64;UBERON:0001016!1.12e-31!75;UBERON:0000073!2.93e-31!54;UBERON:0002020!4.85e-31!34;UBERON:0001049!1.52e-30!52;UBERON:0005068!1.52e-30!52;UBERON:0006241!1.52e-30!52;UBERON:0007135!1.52e-30!52;UBERON:0004121!9.26e-29!95;UBERON:0000924!9.26e-29!95;UBERON:0006601!9.26e-29!95;UBERON:0003528!5.36e-27!29;UBERON:0002791!5.36e-27!29;UBERON:0001893!5.36e-27!29;UBERON:0000955!1.28e-26!47;UBERON:0006238!1.28e-26!47;UBERON:0010371!4.65e-26!73;UBERON:0002616!1.22e-25!46;UBERON:0003056!1.29e-25!49;UBERON:0003080!1.20e-22!40;UBERON:0002780!2.90e-22!39;UBERON:0001890!2.90e-22!39;UBERON:0006240!2.90e-22!39;UBERON:0000956!7.10e-21!21;UBERON:0001869!7.10e-21!21;UBERON:0000203!7.10e-21!21;UBERON:0010314!7.17e-17!92;UBERON:0002619!1.17e-16!17;UBERON:0002021!4.13e-11!10;UBERON:0000411!4.13e-11!10;UBERON:0001950!4.13e-11!10;UBERON:0003076!3.15e-08!12;UBERON:0003057!3.15e-08!12;UBERON:0002420!3.10e-07!8;UBERON:0007245!3.10e-07!8;UBERON:0010009!3.10e-07!8;UBERON:0010011!3.10e-07!8;UBERON:0000454!3.10e-07!8;UBERON:0001954!5.31e-07!7;UBERON:0003022!5.31e-07!7;UBERON:0002421!5.31e-07!7;UBERON:0000349!5.31e-07!7;UBERON:0002600!5.31e-07!7
}}
}}

Revision as of 20:58, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:98190955..98190968,-p2@Neurod2
Mm9::chr13:83854880..83854907,+p@chr13:83854880..83854907
+
Mm9::chr13:83854957..83854966,+p@chr13:83854957..83854966
+
Mm9::chr13:83860754..83860760,-p@chr13:83860754..83860760
-
Mm9::chr13:83860934..83860949,+p2@ENSMUST00000131907
Mm9::chr13:83860962..83860989,+p1@ENSMUST00000131907
Mm9::chr13:84487489..84487511,-p@chr13:84487489..84487511
-
Mm9::chr16:6348617..6348642,+p14@Rbfox1
Mm9::chr19:4711995..4712008,+p5@Spnb3
Mm9::chr3:17954496..17954515,+p3@Bhlhe22
Mm9::chr3:88011177..88011227,+p1@uc008pug.1
Mm9::chr3:88016661..88016693,+p@chr3:88016661..88016693
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0002209behavioral defense response0.0108886210485948
GO:0001662behavioral fear response0.0108886210485948
GO:0008306associative learning0.0108886210485948
GO:0042596fear response0.0108886210485948
GO:0033555multicellular organismal response to stress0.0145181613981263
GO:0007612learning0.023712996950273
GO:0007611learning and/or memory0.0282067135735026



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system4.07e-3373
neurectoderm1.97e-3264
neural plate1.97e-3264
presumptive neural plate1.97e-3264
nervous system1.12e-3175
regional part of nervous system2.93e-3154
gray matter4.85e-3134
neural tube1.52e-3052
neural rod1.52e-3052
future spinal cord1.52e-3052
neural keel1.52e-3052
ectoderm-derived structure9.26e-2995
ectoderm9.26e-2995
presumptive ectoderm9.26e-2995
brain grey matter5.36e-2729
regional part of telencephalon5.36e-2729
telencephalon5.36e-2729
brain1.28e-2647
future brain1.28e-2647
ecto-epithelium4.65e-2673
regional part of brain1.22e-2546
pre-chordal neural plate1.29e-2549
anterior neural tube1.20e-2240
regional part of forebrain2.90e-2239
forebrain2.90e-2239
future forebrain2.90e-2239
cerebral cortex7.10e-2121
cerebral hemisphere7.10e-2121
pallium7.10e-2121
structure with developmental contribution from neural crest7.17e-1792
regional part of cerebral cortex1.17e-1617
occipital lobe4.13e-1110
visual cortex4.13e-1110
neocortex4.13e-1110
posterior neural tube3.15e-0812
chordal neural plate3.15e-0812
basal ganglion3.10e-078
nuclear complex of neuraxis3.10e-078
aggregate regional part of brain3.10e-078
collection of basal ganglia3.10e-078
cerebral subcortex3.10e-078
Ammon's horn5.31e-077
lobe parts of cerebral cortex5.31e-077
hippocampal formation5.31e-077
limbic system5.31e-077
limbic lobe5.31e-077


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}