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MCL coexpression mm9:3582: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004111!4.38e-19!122;UBERON:0000025!1.53e-17!114;UBERON:0001017!8.13e-10!73;UBERON:0001016!3.96e-09!75;UBERON:0000468!6.64e-09!333;UBERON:0010314!8.69e-09!92;UBERON:0004121!1.25e-08!95;UBERON:0000924!1.25e-08!95;UBERON:0006601!1.25e-08!95;UBERON:0005177!1.29e-08!79;UBERON:0000073!2.31e-08!54;UBERON:0003914!2.56e-08!47;UBERON:0002100!9.93e-08!90;UBERON:0001049!1.07e-07!52;UBERON:0005068!1.07e-07!52;UBERON:0006241!1.07e-07!52;UBERON:0007135!1.07e-07!52;UBERON:0002365!1.84e-07!25;UBERON:0002330!1.84e-07!25;UBERON:0000479!2.42e-07!349
}}
}}

Revision as of 20:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:90412556..90412581,+p3@Klf15
Mm9::chr6:90412582..90412601,+p1@Klf15
Mm9::chr6:90412608..90412630,+p2@Klf15


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
anatomical conduit4.38e-19122
tube1.53e-17114
central nervous system8.13e-1073
nervous system3.96e-0975
multi-cellular organism6.64e-09333
structure with developmental contribution from neural crest8.69e-0992
ectoderm-derived structure1.25e-0895
ectoderm1.25e-0895
presumptive ectoderm1.25e-0895
trunk region element1.29e-0879
regional part of nervous system2.31e-0854
epithelial tube2.56e-0847
trunk9.93e-0890
neural tube1.07e-0752
neural rod1.07e-0752
future spinal cord1.07e-0752
neural keel1.07e-0752
exocrine gland1.84e-0725
exocrine system1.84e-0725
tissue2.42e-07349


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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