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MCL coexpression mm9:3150: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!1.07e-10!54;UBERON:0000955!2.15e-10!47;UBERON:0006238!2.15e-10!47;UBERON:0002616!1.22e-09!46;UBERON:0001049!3.46e-09!52;UBERON:0005068!3.46e-09!52;UBERON:0006241!3.46e-09!52;UBERON:0007135!3.46e-09!52;UBERON:0002346!2.97e-08!64;UBERON:0003075!2.97e-08!64;UBERON:0007284!2.97e-08!64;UBERON:0010371!1.31e-07!73;UBERON:0004121!1.52e-07!95;UBERON:0000924!1.52e-07!95;UBERON:0006601!1.52e-07!95;UBERON:0001016!2.10e-07!75;UBERON:0001017!2.22e-07!73;UBERON:0003080!6.16e-07!40;UBERON:0003056!6.45e-07!49
}}
}}

Revision as of 19:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr18:57628201..57628214,+p3@Ctxn3
Mm9::chr18:57628323..57628345,+p2@Ctxn3
Mm9::chr18:57628375..57628384,+p4@Ctxn3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.07e-1054
brain2.15e-1047
future brain2.15e-1047
regional part of brain1.22e-0946
neural tube3.46e-0952
neural rod3.46e-0952
future spinal cord3.46e-0952
neural keel3.46e-0952
neurectoderm2.97e-0864
neural plate2.97e-0864
presumptive neural plate2.97e-0864
ecto-epithelium1.31e-0773
ectoderm-derived structure1.52e-0795
ectoderm1.52e-0795
presumptive ectoderm1.52e-0795
nervous system2.10e-0775
central nervous system2.22e-0773
anterior neural tube6.16e-0740
pre-chordal neural plate6.45e-0749


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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