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|coexpression_dpi_cluster_scores_median=0.120671864823979,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,-0.0121799552088786,-0.0283086093533996,-0.0906248896449413,0,0,0,0,-0.0292147763965849,0,0,0,0,0,0,0,0.056034715833489,0,0,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,0,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,-0.0211321323045494,0,0,0,0,0,0,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,0,0.0174750389890568,0,0.226521098006606,1.03387117144951,0.825263177252644,0.760796746469826,0.480875177131796,0.7115082224767,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,0,0,0,0.43716905076288,0.338358537012186,0.462621708334166,0.22471147363102,0,0,0,0,0.69701146701051,1.04098488621267,0.577274431318002,0.576641380630368,0.532099821814886,0.646189154578081,0.368044907741727,0.548532358773041,0.543072027050167,0.574917061061619,0.246847203776689,0.305497543111007,0.357413027214147,0.389298863346303,0.391605855891166,0.430522857883165,0.411821918210989,0.327466262382121,0.359572248148553,0.462216818295239,0.489771265461828,0.394726752176835,0.41574683869222,0.435962784002666,0,-0.0705445280710673,0,0,-0.0978461107777356,-0.0978461107777356,-0.0978461107777356,0,0,0,0.327715902008719,0,0,0,0.0851089148667383,0.257566964324087,0.0798417007142453,-0.0978461107777356,0,0,0.0637511684309463,0,0,0.00119623249903444,0,0,0,-0.0978461107777356,0,0,0,0,0,0.164226138964909,0.220868395797897,-0.0978461107777356,0,0,0,0.170405192263263,0.184322940948024,0.328560861944801,0.173791445768894,0.149426412648237,0.192219852310484,0.209960985471684,0.120337209849016,0,-0.0978461107777356,-0.0149021780277719,0.11979631274165,0.129965115968021,0.146798484480375,0.0609639314262262,0.197689708082853,0.141243132041307,0.140904419617419,0.00207728443769314,0.0847792561696249,0,0,0,0.0645800843311863,0.0319250160559048,0,0.0775634659645841,0,0,0,0,0.0915002620172692,0.0357324324750951,0,0,-0.00703767779121334,-0.0070472219239749,0,-0.0498841831600461,-0.0316842977531136,-0.0556272773624268,-0.0325885509908847,0,-0.0243743060638917,-0.0431540100387219,0.0993222646839969,0.552986254947576,0,-0.0978461107777356,0.0218701592425703,0,0,0.0797901069290224,0,0,-0.0978461107777356,0,-0.00420447173798977,0.0450800905027742,0,-0.0978461107777356,0,-0.0978461107777356,0.0977778577482959,0.046982063026719,0,0.0505413964376513,0,0.0570083229196787,0.105192537779744,0,-0.0572951881407007,-0.00205129294437065,-0.0978461107777356,0,0,0,0,0,0,-0.0978461107777356,-0.0272731671655941,0,-0.0276254419589426,0,-0.0482617635236218,0,-0.0540367701245135,0,0,0.0629726573651235,0.120127101255176,0.0869898467461545,0,0.0672592169170953,0.0927359537809747,0.0730198344807996,0,0.086880916817156,0.00398096097889689,0,0,0,-0.0978461107777356,-0.0978461107777356,0,0,0.290424814503788,0.200319183388305,0,0,0.256652802139169,0.248585350936203,0.269908203649581,0.169656096896275,0.276736241266501,0.333269742796632,0.15974161346464,0.175564380439756,0.252992651410535,0.293133511567635,0.023504881262565,0,0.0708306209601099,0,-0.0978461107777356,0,0,0,0,-0.0243050298971392,0,0,0,0,-0.0623102224006273,0,0.333871062054169,0.137744035934406,0.249480154310407,0.215640498836817,0.154007575414847,0.0712812415377886,0.173855399996638,0.345934088454706,-0.0978461107777356,0,-0.0978461107777356,0,0,0.0261156749270546,0.0350910849148463,0.0660055475634404,-0.0978461107777356,0.297200988528804,-0.0062607210193415,0.0391148252601931,0,0,0,0,0,0,0,0,0.0707998414197227,0.0503365232704501,0.0849373898696927,0.0801142692118595,0.15737368738825,0.054943952156948,0.100418886970327,0.00312924785469637,0,-0.0208709061806669,0,0.0605152268483434,0.038801838459378,0.101731793470005,0.0527554171614426,0,0.0481920468563092,0.130377517107815,0,0,0,-0.0978461107777356,0,0,0,0,-0.0978461107777356,0,0,0,0,-0.0561273592856597,-0.0978461107777356,-0.0214155176070451,-0.0498408012693655,0.0887491219977394,0,0,-0.080317737570704,-0.0978461107777356,0,0,0.0843504501108034,-0.0626432306048244,0.21577512124694,0.148365418858081,0.232777536692363,0.171495396118075,0.330414041033927,0.146528473424798,0.00662570372414484,0,0.0713532653654443,0.156456482268043,0.0334315119382076,0.18428116744099,0.170185848705938,0.0102776396977609,0.0876484614628357,0.0990138627445746,0.064644794964521,0.0190994574210565,0,0,0.0802552104593495,0.0750453505157095,-0.0232918558702316,0.160821365870842,0.0898139621139603,0.0713266530884488,0.100651970477868,0.043860225365079,-0.0012297824505122,0.00766303747637398,-0.0230839434841218,-0.0268941184243111,0.0261740117471246,0.0589368614163519,0.0965728374869084,0.0320073115180931,0.0729583017401753,0.00358121005256527,0,0,0.135609475907937,0.0780974029773103,-0.00354441372503911,0.0099382100984029,0.0766064454112358,0.175981558593572,-0.0628726880640682,0.0845301845292944,0.0760168881589905,0.0865703124974023,-0.00728199494584811
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|gostat_on_MCL_coexpression=GO:0006101;citrate metabolic process;0.0405323965856262;78929!GO:0050973;detection of mechanical stimulus during equilibrioception;0.0405323965856262;20674!GO:0050957;equilibrioception;0.0405323965856262;20674!
|gostat_on_MCL_coexpression=GO:0006101;citrate metabolic process;0.0405323965856262;78929!GO:0050973;detection of mechanical stimulus during equilibrioception;0.0405323965856262;20674!GO:0050957;equilibrioception;0.0405323965856262;20674!
|ontology_enrichment_celltype=CL:0000221!2.67e-27!44;CL:0000133!2.67e-27!44;CL:0002319!1.04e-26!43;CL:0000055!5.78e-23!49;CL:0000540!1.86e-19!33;CL:0000047!1.86e-19!33;CL:0000031!1.86e-19!33;CL:0000404!1.86e-19!33;CL:0000393!5.27e-16!39;CL:0000211!5.27e-16!39;CL:0000117!2.74e-15!23;CL:0000337!2.74e-15!23;CL:0002321!1.23e-12!70;CL:0000333!5.23e-08!10;CL:0000095!5.23e-08!10;CL:0000243!5.23e-08!10;CL:0000123!5.23e-08!10;CL:0000125!5.23e-08!10;CL:0000030!5.23e-08!10;CL:0000339!5.23e-08!10;CL:0002453!8.07e-07!8
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001016!6.11e-40!75;UBERON:0001017!2.26e-38!73;UBERON:0004121!2.75e-38!95;UBERON:0000924!2.75e-38!95;UBERON:0006601!2.75e-38!95;UBERON:0002346!8.74e-28!64;UBERON:0003075!8.74e-28!64;UBERON:0007284!8.74e-28!64;UBERON:0010371!1.37e-26!73;UBERON:0000073!1.96e-26!54;UBERON:0001049!2.92e-25!52;UBERON:0005068!2.92e-25!52;UBERON:0006241!2.92e-25!52;UBERON:0007135!2.92e-25!52;UBERON:0000955!8.89e-22!47;UBERON:0006238!8.89e-22!47;UBERON:0002616!3.18e-21!46;UBERON:0003056!6.17e-19!49;UBERON:0003080!3.60e-18!40;UBERON:0002780!8.57e-18!39;UBERON:0001890!8.57e-18!39;UBERON:0006240!8.57e-18!39;UBERON:0010314!3.58e-17!92;UBERON:0002020!4.12e-17!34;UBERON:0003528!6.95e-14!29;UBERON:0002791!6.95e-14!29;UBERON:0001893!6.95e-14!29;UBERON:0000956!1.55e-09!21;UBERON:0001869!1.55e-09!21;UBERON:0000203!1.55e-09!21;UBERON:0003076!1.12e-07!12;UBERON:0003057!1.12e-07!12;UBERON:0002619!2.82e-07!17;UBERON:0011216!6.62e-07!194
}}
}}

Revision as of 17:16, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:81756578..81756653,-p1@Polr3h
Mm9::chr19:4615453..4615512,-p1@Lrfn4
Mm9::chr3:34549096..34549111,+p3@Sox2
Mm9::chr8:87238155..87238187,-p13@Nfix
Mm9::chr9:108998049..108998061,+p5@Plxnb1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0006101citrate metabolic process0.0405323965856262
GO:0050973detection of mechanical stimulus during equilibrioception0.0405323965856262
GO:0050957equilibrioception0.0405323965856262



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system6.11e-4075
central nervous system2.26e-3873
ectoderm-derived structure2.75e-3895
ectoderm2.75e-3895
presumptive ectoderm2.75e-3895
neurectoderm8.74e-2864
neural plate8.74e-2864
presumptive neural plate8.74e-2864
ecto-epithelium1.37e-2673
regional part of nervous system1.96e-2654
neural tube2.92e-2552
neural rod2.92e-2552
future spinal cord2.92e-2552
neural keel2.92e-2552
brain8.89e-2247
future brain8.89e-2247
regional part of brain3.18e-2146
pre-chordal neural plate6.17e-1949
anterior neural tube3.60e-1840
regional part of forebrain8.57e-1839
forebrain8.57e-1839
future forebrain8.57e-1839
structure with developmental contribution from neural crest3.58e-1792
gray matter4.12e-1734
brain grey matter6.95e-1429
regional part of telencephalon6.95e-1429
telencephalon6.95e-1429
cerebral cortex1.55e-0921
cerebral hemisphere1.55e-0921
pallium1.55e-0921
posterior neural tube1.12e-0712
chordal neural plate1.12e-0712
regional part of cerebral cortex2.82e-0717
organ system subdivision6.62e-07194


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}