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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300884327422511,0.418268492413706,0.380052651166226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151729951641765,0.115432590314795,0.0901223798974778,0.06097065795378,0.0482820047261801,0,0,0,0.275221618407307,0.121735003810417,0.274934742957371,0.294411220774837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137740408373976,0,0,0,0,0,0.0609639314262262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150526661879793,0.0915002620172692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0839639919176933,0.0906941294286938,0.0526429550379996,0,0,0,0,0,0,0,0,0,0,0,0,0.0893741091821246,0,0,0,0,0,0,0,0,0,0.855717111971577,0.885531162956076,0.989877777624125,0.917878669865973,0.875743051677014,0.83609580362791,0.648589652941935,0.390796859579835,0.321856331993588,0,0.137398724818722,0,0,0,0,0,0.0753613107413788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0943944778653996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306473340882971,0.150072612586664,0.508170597989631,0.593499524727204,0.443579783280573,0.40080072607553,0,0,0,0,0.0637715600712905,0.0803809427109337,0.0445418537893845,0,0.0725944312186246,0,0,0,0,0,0,0.0091054499984286,0.0664968100861445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254801703227441,0.268031959483673,0.426344518514299,0.31134390827267,0.135986724295729,0.159715578577694,0.202385865805556,0.215330413983256,0.167873100778245,0.178101321237085,0.139013627015232,0.166787449282399,0.146208812506565,0.146762969796454,0.169172763866184,0.165403796547116,0.141706336142815,0.14986111676545,0.123899643579403,0.128033729919821,0.18156175448065,0.14956300122681,0.157166310227119,0.167478880586199,0.153227190892218,0.135404897539632,0.101427320830301,0.104353329269123,0.193442483447008,0.132229279644795,0.112441925220423,0.148982201447044,0.117229416500102,0.198305064902181,0,0.166685587652774,0.0845301845292944,0,0.0865703124974023,0.0806834005485451
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300884327422511,0.418268492413706,0.380052651166226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151729951641765,0.115432590314795,0.0901223798974778,0.06097065795378,0.0482820047261801,0,0,0,0.275221618407307,0.121735003810417,0.274934742957371,0.294411220774837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137740408373976,0,0,0,0,0,0.0609639314262262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150526661879793,0.0915002620172692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0839639919176933,0.0906941294286938,0.0526429550379996,0,0,0,0,0,0,0,0,0,0,0,0,0.0893741091821246,0,0,0,0,0,0,0,0,0,0.855717111971577,0.885531162956076,0.989877777624125,0.917878669865973,0.875743051677014,0.83609580362791,0.648589652941935,0.390796859579835,0.321856331993588,0,0.137398724818722,0,0,0,0,0,0.0753613107413788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0943944778653996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306473340882971,0.150072612586664,0.508170597989631,0.593499524727204,0.443579783280573,0.40080072607553,0,0,0,0,0.0637715600712905,0.0803809427109337,0.0445418537893845,0,0.0725944312186246,0,0,0,0,0,0,0.0091054499984286,0.0664968100861445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254801703227441,0.268031959483673,0.426344518514299,0.31134390827267,0.135986724295729,0.159715578577694,0.202385865805556,0.215330413983256,0.167873100778245,0.178101321237085,0.139013627015232,0.166787449282399,0.146208812506565,0.146762969796454,0.169172763866184,0.165403796547116,0.141706336142815,0.14986111676545,0.123899643579403,0.128033729919821,0.18156175448065,0.14956300122681,0.157166310227119,0.167478880586199,0.153227190892218,0.135404897539632,0.101427320830301,0.104353329269123,0.193442483447008,0.132229279644795,0.112441925220423,0.148982201447044,0.117229416500102,0.198305064902181,0,0.166685587652774,0.0845301845292944,0,0.0865703124974023,0.0806834005485451
|gostat_on_MCL_coexpression=GO:0000293;ferric-chelate reductase activity;0.00240073715954517;68428,20321!GO:0016723;oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor;0.00240073715954517;68428,20321!GO:0016722;oxidoreductase activity, oxidizing metal ions;0.00447156352393819;68428,20321!GO:0004733;pyridoxamine-phosphate oxidase activity;0.0439991598606532;103711!GO:0008480;sarcosine dehydrogenase activity;0.0439991598606532;192166!GO:0006096;glycolysis;0.0439991598606532;18770,15275!GO:0016491;oxidoreductase activity;0.0439991598606532;68428,192166,103711,20321,12892!GO:0006007;glucose catabolic process;0.0439991598606532;18770,15275!GO:0046365;monosaccharide catabolic process;0.0439991598606532;18770,15275!GO:0019320;hexose catabolic process;0.0439991598606532;18770,15275!GO:0046164;alcohol catabolic process;0.0439991598606532;18770,15275!GO:0000041;transition metal ion transport;0.0439991598606532;68428,226781!GO:0042816;vitamin B6 metabolic process;0.0439991598606532;103711!GO:0004743;pyruvate kinase activity;0.0439991598606532;18770!GO:0008614;pyridoxine metabolic process;0.0439991598606532;103711!GO:0004109;coproporphyrinogen oxidase activity;0.0439991598606532;12892!GO:0000780;condensed nuclear chromosome, pericentric region;0.0439991598606532;232811!GO:0042819;vitamin B6 biosynthetic process;0.0439991598606532;103711!GO:0008615;pyridoxine biosynthetic process;0.0439991598606532;103711!GO:0044275;cellular carbohydrate catabolic process;0.0492542329247989;18770,15275!
|gostat_on_MCL_coexpression=GO:0000293;ferric-chelate reductase activity;0.00240073715954517;68428,20321!GO:0016723;oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor;0.00240073715954517;68428,20321!GO:0016722;oxidoreductase activity, oxidizing metal ions;0.00447156352393819;68428,20321!GO:0004733;pyridoxamine-phosphate oxidase activity;0.0439991598606532;103711!GO:0008480;sarcosine dehydrogenase activity;0.0439991598606532;192166!GO:0006096;glycolysis;0.0439991598606532;18770,15275!GO:0016491;oxidoreductase activity;0.0439991598606532;68428,192166,103711,20321,12892!GO:0006007;glucose catabolic process;0.0439991598606532;18770,15275!GO:0046365;monosaccharide catabolic process;0.0439991598606532;18770,15275!GO:0019320;hexose catabolic process;0.0439991598606532;18770,15275!GO:0046164;alcohol catabolic process;0.0439991598606532;18770,15275!GO:0000041;transition metal ion transport;0.0439991598606532;68428,226781!GO:0042816;vitamin B6 metabolic process;0.0439991598606532;103711!GO:0004743;pyruvate kinase activity;0.0439991598606532;18770!GO:0008614;pyridoxine metabolic process;0.0439991598606532;103711!GO:0004109;coproporphyrinogen oxidase activity;0.0439991598606532;12892!GO:0000780;condensed nuclear chromosome, pericentric region;0.0439991598606532;232811!GO:0042819;vitamin B6 biosynthetic process;0.0439991598606532;103711!GO:0008615;pyridoxine biosynthetic process;0.0439991598606532;103711!GO:0044275;cellular carbohydrate catabolic process;0.0492542329247989;18770,15275!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002106!2.03e-08!6;UBERON:0004457!2.03e-08!6;UBERON:0000042!2.03e-08!6;UBERON:0004854!2.03e-08!6;UBERON:0009034!2.03e-08!6;UBERON:0002095!2.03e-08!6;UBERON:0004782!2.03e-08!6;UBERON:0003281!2.03e-08!6;UBERON:0009664!2.03e-08!6;UBERON:0002296!2.03e-08!6;UBERON:0005602!2.03e-08!6;UBERON:0001179!2.03e-08!6;UBERON:0006293!2.03e-08!6;UBERON:0005172!6.45e-08!49;UBERON:0005173!6.45e-08!49;UBERON:0002417!6.45e-08!49;UBERON:0000916!6.45e-08!49
}}
}}

Revision as of 17:12, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:61790414..61790427,-p13@Hk1
Mm9::chr10:80598968..80599012,+p5@Zbtb7a
Mm9::chr11:117659040..117659062,+p1@6030468B19Rik
Mm9::chr11:74433178..74433216,+p2@E130309D14Rik
Mm9::chr11:77885415..77885418,+p@chr11:77885415..77885418
+
Mm9::chr11:84637090..84637112,-p@chr11:84637090..84637112
-
Mm9::chr11:84637170..84637197,-p@chr11:84637170..84637197
-
Mm9::chr11:84637220..84637231,-p@chr11:84637220..84637231
-
Mm9::chr11:96805245..96805254,-p5@Pnpo
Mm9::chr12:52930846..52930857,-p7@Hectd1
Mm9::chr13:53537276..53537281,+p@chr13:53537276..53537281
+
Mm9::chr13:76154994..76155011,-p@chr13:76154994..76155011
-
Mm9::chr13:76193135..76193185,+p@chr13:76193135..76193185
+
Mm9::chr14:27813679..27813693,+p2@Hesx1
Mm9::chr14:55681772..55681781,+p@chr14:55681772..55681781
+
Mm9::chr14:70019476..70019481,-p@chr14:70019476..70019481
-
Mm9::chr15:35130686..35130729,+p@chr15:35130686..35130729
+
Mm9::chr15:78091332..78091357,+p5@Ncf4
Mm9::chr16:11584601..11584606,+p@chr16:11584601..11584606
+
Mm9::chr16:58670163..58670203,+p3@Cpox
Mm9::chr16:58670348..58670359,+p2@Cpox
Mm9::chr17:25223888..25223930,+p@chr17:25223888..25223930
+
Mm9::chr17:29580791..29580806,-p@chr17:29580791..29580806
-
Mm9::chr17:71619652..71619694,-p@chr17:71619652..71619694
-
Mm9::chr18:54582024..54582035,+p2@9430076G02Rik
Mm9::chr19:56000423..56000437,+p@chr19:56000423..56000437
+
Mm9::chr19:56000441..56000469,+p@chr19:56000441..56000469
+
Mm9::chr19:56012976..56012990,+p@chr19:56012976..56012990
+
Mm9::chr1:122167601..122167610,-p6@Steap3
Mm9::chr1:122167651..122167662,-p3@Steap3
Mm9::chr1:175280282..175280308,+p@chr1:175280282..175280308
+
Mm9::chr1:181906066..181906070,+p10@Cdc42bpa
Mm9::chr1:187278654..187278679,+p4@Slc30a10
Mm9::chr1:187278682..187278696,+p5@Slc30a10
Mm9::chr1:194861845..194861922,-p1@Syt14
Mm9::chr2:145924938..145924957,-p@chr2:145924938..145924957
-
Mm9::chr2:155814929..155814968,-p@chr2:155814929..155814968
-
Mm9::chr2:155815043..155815067,+p@chr2:155815043..155815067
+
Mm9::chr2:27080713..27080729,-p16@Sardh
Mm9::chr3:116562475..116562486,+p4@Frrs1
Mm9::chr3:116562492..116562509,+p2@Frrs1
Mm9::chr3:116562511..116562523,+p5@Frrs1
Mm9::chr3:153396873..153396893,-p@chr3:153396873..153396893
-
Mm9::chr3:88940055..88940105,+p1@Pklr
Mm9::chr4:109078850..109078867,-p1@uc008uch.1
Mm9::chr4:116666344..116666359,-p3@Urod
Mm9::chr4:141573922..141573949,+p1@uc008vpq.1
Mm9::chr4:46417096..46417112,-p1@Hemgn
Mm9::chr4:87452236..87452249,-p9@Mllt3
Mm9::chr5:116397935..116397956,+p@chr5:116397935..116397956
+
Mm9::chr5:35317630..35317648,+p7@Rgs12
Mm9::chr5:37112052..37112057,-p@chr5:37112052..37112057
-
Mm9::chr5:38899296..38899314,+p@chr5:38899296..38899314
+
Mm9::chr6:41653083..41653097,-p@chr6:41653083..41653097
-
Mm9::chr6:83301229..83301242,+p3@Bola3
Mm9::chr7:110962582..110962608,+p@chr7:110962582..110962608
+
Mm9::chr7:111067471..111067472,+p@chr7:111067471..111067472
+
Mm9::chr7:148382749..148382757,+p6@Lrrc56
Mm9::chr7:17642177..17642223,-p3@Hif3a
Mm9::chr7:4693441..4693454,+p10@Suv420h2
Mm9::chr7:52184039..52184051,-p8@Ap2a1
Mm9::chr8:90824273..90824283,+p@chr8:90824273..90824283
+
Mm9::chr8:90824303..90824338,+p@chr8:90824303..90824338
+
Mm9::chr8:90824341..90824359,+p@chr8:90824341..90824359
+
Mm9::chr9:48147805..48147837,-p@chr9:48147805..48147837
-
Mm9::chrX:8834026..8834043,-p1@uc009spp.1
Mm9::chrX:8834052..8834063,-p2@uc009spp.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0000293ferric-chelate reductase activity0.00240073715954517
GO:0016723oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor0.00240073715954517
GO:0016722oxidoreductase activity, oxidizing metal ions0.00447156352393819
GO:0004733pyridoxamine-phosphate oxidase activity0.0439991598606532
GO:0008480sarcosine dehydrogenase activity0.0439991598606532
GO:0006096glycolysis0.0439991598606532
GO:0016491oxidoreductase activity0.0439991598606532
GO:0006007glucose catabolic process0.0439991598606532
GO:0046365monosaccharide catabolic process0.0439991598606532
GO:0019320hexose catabolic process0.0439991598606532
GO:0046164alcohol catabolic process0.0439991598606532
GO:0000041transition metal ion transport0.0439991598606532
GO:0042816vitamin B6 metabolic process0.0439991598606532
GO:0004743pyruvate kinase activity0.0439991598606532
GO:0008614pyridoxine metabolic process0.0439991598606532
GO:0004109coproporphyrinogen oxidase activity0.0439991598606532
GO:0000780condensed nuclear chromosome, pericentric region0.0439991598606532
GO:0042819vitamin B6 biosynthetic process0.0439991598606532
GO:0008615pyridoxine biosynthetic process0.0439991598606532
GO:0044275cellular carbohydrate catabolic process0.0492542329247989



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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