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|gostat_on_MCL_coexpression=GO:0004251;X-Pro dipeptidase activity;0.00712211691228839;18624!GO:0008451;X-Pro aminopeptidase activity;0.0106825900531045;18624!GO:0016805;dipeptidase activity;0.0112711246155063;18624!GO:0030574;collagen catabolic process;0.0112711246155063;18624!GO:0044256;protein digestion;0.0112711246155063;18624!GO:0044254;multicellular organismal protein catabolic process;0.0112711246155063;18624!GO:0044266;multicellular organismal macromolecule catabolic process;0.0112711246155063;18624!GO:0044259;multicellular organismal macromolecule metabolic process;0.0112711246155063;18624!GO:0044243;multicellular organismal catabolic process;0.0112711246155063;18624!GO:0044268;multicellular organismal protein metabolic process;0.0112711246155063;18624!GO:0032963;collagen metabolic process;0.0112711246155063;18624!GO:0044236;multicellular organismal metabolic process;0.0112711246155063;18624!GO:0004177;aminopeptidase activity;0.0202506496729996;18624!GO:0007586;digestion;0.020327165180066;18624!GO:0008235;metalloexopeptidase activity;0.0260757978667363;18624!GO:0008238;exopeptidase activity;0.0417358363055646;18624!
|gostat_on_MCL_coexpression=GO:0004251;X-Pro dipeptidase activity;0.00712211691228839;18624!GO:0008451;X-Pro aminopeptidase activity;0.0106825900531045;18624!GO:0016805;dipeptidase activity;0.0112711246155063;18624!GO:0030574;collagen catabolic process;0.0112711246155063;18624!GO:0044256;protein digestion;0.0112711246155063;18624!GO:0044254;multicellular organismal protein catabolic process;0.0112711246155063;18624!GO:0044266;multicellular organismal macromolecule catabolic process;0.0112711246155063;18624!GO:0044259;multicellular organismal macromolecule metabolic process;0.0112711246155063;18624!GO:0044243;multicellular organismal catabolic process;0.0112711246155063;18624!GO:0044268;multicellular organismal protein metabolic process;0.0112711246155063;18624!GO:0032963;collagen metabolic process;0.0112711246155063;18624!GO:0044236;multicellular organismal metabolic process;0.0112711246155063;18624!GO:0004177;aminopeptidase activity;0.0202506496729996;18624!GO:0007586;digestion;0.020327165180066;18624!GO:0008235;metalloexopeptidase activity;0.0260757978667363;18624!GO:0008238;exopeptidase activity;0.0417358363055646;18624!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
}}
}}

Revision as of 17:01, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:45206169..45206190,-p3@Lin28b
Mm9::chr10:45206248..45206267,-p2@Lin28b
Mm9::chr11:75263401..75263412,-p7@Wdr81
Mm9::chr7:35754354..35754391,+p2@Pepd
Mm9::chr7:4744775..4744787,+p3@Gm10051
p3@Rpl28


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004251X-Pro dipeptidase activity0.00712211691228839
GO:0008451X-Pro aminopeptidase activity0.0106825900531045
GO:0016805dipeptidase activity0.0112711246155063
GO:0030574collagen catabolic process0.0112711246155063
GO:0044256protein digestion0.0112711246155063
GO:0044254multicellular organismal protein catabolic process0.0112711246155063
GO:0044266multicellular organismal macromolecule catabolic process0.0112711246155063
GO:0044259multicellular organismal macromolecule metabolic process0.0112711246155063
GO:0044243multicellular organismal catabolic process0.0112711246155063
GO:0044268multicellular organismal protein metabolic process0.0112711246155063
GO:0032963collagen metabolic process0.0112711246155063
GO:0044236multicellular organismal metabolic process0.0112711246155063
GO:0004177aminopeptidase activity0.0202506496729996
GO:0007586digestion0.020327165180066
GO:0008235metalloexopeptidase activity0.0260757978667363
GO:0008238exopeptidase activity0.0417358363055646



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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