Personal tools

MCL coexpression mm9:1284: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256331050803366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.090137344673203,0.110200614193812,0.339298441552469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0310288534679737,0,0,0,0,0,0,0,0,0,0,0,0.385983211881697,0,0,0,0,0,0.0970570999739074,0,0,0,0,0,0,0,0,0,0,0.0681426399143868,0,0,0,0,0,0,0.0186232843588348,0.0481837481306729,0.168439500632216,1.21412497348138,0,0.0651189800845078,0.158138450347021,0.00300424914804577,0.456960520238567,0,0.0412933681609532,0.241953764586752,0,0,0,0.0606187686764715,0,0,0.0348015516584171,0.0427060757130689,0.116461972308354,0.0326481450697549,0.120765677350079,0.224088274000654,0.193538715404857,0.117751234261337,0,0,0,0,0.0195734502752447,0.0523528812100954,0.074598306112166,0.140512702207538,0,0,0,0,0,0,0.0621952115567743,0,0,0,0,0.223915619432709,0.253617543560144,0.285847135861344,0.246972868781663,0.244318176372941,0.210159490883487,0.229835835810773,0.144879338841876,0.0891954587389927,0.196952332381728,0.23975355820333,0.319022704888889,0.219135750423867,0.430282026537109,0.345819908757868,0,0,0,0.156701820629468,0.0419819959588466,0.0453470647143469,0.0263214775189998,0.089365339514967,0.212185112167911,0.221639751483136,0.257609377913741,0.22046115064545,0.238706933935092,0.291078400235795,0.370471471857986,0.362637653685235,0.241739466753174,0.106720331828788,0.0228469296482,0,0.081050906681977,0,0.0384935222863376,0.0294389011296462,0.0957085445650653,0.10075872572393,0.137492962254464,0.0505333231410966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320033053757392,0.0995738649901089,0.151681362722007,0.0846410865860612,0.091558018055706,0.0963722769340982,0.0480832604972447,0.143098306652819,0.154447668387816,0.275509163131028,0.23772416018065,0.240095899634466,0.338780409144484,0.374416211854168,0,0,0.262691782935113,0.246136610012211,0.132585936363228,0.024715242251631,0,0.177519720662585,0,0,0,0,0,0,0,0,0,0.060504220684743,0.649250821063857,0.0355847379748454,0.0721785630363761,0.675027637732772,0,0,0,0,0,0.0582100779900745,0.0917075284838484,0,0,0.41224240916389,0,0,0,0,0,0,0,0,0,0,0.114524396058595,0.041721220909304,0.443399568301481,0.123777349320174,0.0462831259199646,0.0494606362651129,0,0,0.313249718262763,0.105432160215428,0,0.0687915320467584,0,0,0.055643654597214,0,0,0,0,0.789337179609431,0.0333680205940838,0.148182634048186,0.150951520945892,0.327764796790119,0.410686842559949,0.505954258497405,0.776952801143248,0.760291469268563,0.42745196265289,0.350767044033686,0,0,0.0332484050430722,0.0555324200116386,0.0527554171614426,0,0.0457832701852885,0.100511416252052,0.0858888781179984,0.0355226387064698,0.054962990285351,0,0,0,0,0,0,0.00240479815261722,0,0,0,0,0,0,0,0.22136806833656,0,0,0,1.31782155476812,0.866399723328853,0.825175210423817,0.588501949493473,0.540556781638382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0366471485294105,0.154513394593269,0.115608096853184,0.120876255993453,0.0755326790354395,0.098117166361508,0.172468378828183,0.055843142283013,0.0899730932423686,0.135961008707697,0,0.110053611258545,0.0238650932896656,0.074930558382725,0.0622531888167965,0.128033729919821,0.131923786075207,0.163607946001013,0.0819992549722015,0.0748964051866952,0.125735317943804,0.0729583017401753,0.0448090307628235,0.148421355017489,0.096721241723504,0.0904588450746591,0.0742516023511979,0.074491100723522,0.0945173591597457,0.0383032227056179,0,0.14342199035655,0.0845301845292944,0.070344611177821,0.122644697176553,0.112956136188487
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256331050803366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.090137344673203,0.110200614193812,0.339298441552469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0310288534679737,0,0,0,0,0,0,0,0,0,0,0,0.385983211881697,0,0,0,0,0,0.0970570999739074,0,0,0,0,0,0,0,0,0,0,0.0681426399143868,0,0,0,0,0,0,0.0186232843588348,0.0481837481306729,0.168439500632216,1.21412497348138,0,0.0651189800845078,0.158138450347021,0.00300424914804577,0.456960520238567,0,0.0412933681609532,0.241953764586752,0,0,0,0.0606187686764715,0,0,0.0348015516584171,0.0427060757130689,0.116461972308354,0.0326481450697549,0.120765677350079,0.224088274000654,0.193538715404857,0.117751234261337,0,0,0,0,0.0195734502752447,0.0523528812100954,0.074598306112166,0.140512702207538,0,0,0,0,0,0,0.0621952115567743,0,0,0,0,0.223915619432709,0.253617543560144,0.285847135861344,0.246972868781663,0.244318176372941,0.210159490883487,0.229835835810773,0.144879338841876,0.0891954587389927,0.196952332381728,0.23975355820333,0.319022704888889,0.219135750423867,0.430282026537109,0.345819908757868,0,0,0,0.156701820629468,0.0419819959588466,0.0453470647143469,0.0263214775189998,0.089365339514967,0.212185112167911,0.221639751483136,0.257609377913741,0.22046115064545,0.238706933935092,0.291078400235795,0.370471471857986,0.362637653685235,0.241739466753174,0.106720331828788,0.0228469296482,0,0.081050906681977,0,0.0384935222863376,0.0294389011296462,0.0957085445650653,0.10075872572393,0.137492962254464,0.0505333231410966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320033053757392,0.0995738649901089,0.151681362722007,0.0846410865860612,0.091558018055706,0.0963722769340982,0.0480832604972447,0.143098306652819,0.154447668387816,0.275509163131028,0.23772416018065,0.240095899634466,0.338780409144484,0.374416211854168,0,0,0.262691782935113,0.246136610012211,0.132585936363228,0.024715242251631,0,0.177519720662585,0,0,0,0,0,0,0,0,0,0.060504220684743,0.649250821063857,0.0355847379748454,0.0721785630363761,0.675027637732772,0,0,0,0,0,0.0582100779900745,0.0917075284838484,0,0,0.41224240916389,0,0,0,0,0,0,0,0,0,0,0.114524396058595,0.041721220909304,0.443399568301481,0.123777349320174,0.0462831259199646,0.0494606362651129,0,0,0.313249718262763,0.105432160215428,0,0.0687915320467584,0,0,0.055643654597214,0,0,0,0,0.789337179609431,0.0333680205940838,0.148182634048186,0.150951520945892,0.327764796790119,0.410686842559949,0.505954258497405,0.776952801143248,0.760291469268563,0.42745196265289,0.350767044033686,0,0,0.0332484050430722,0.0555324200116386,0.0527554171614426,0,0.0457832701852885,0.100511416252052,0.0858888781179984,0.0355226387064698,0.054962990285351,0,0,0,0,0,0,0.00240479815261722,0,0,0,0,0,0,0,0.22136806833656,0,0,0,1.31782155476812,0.866399723328853,0.825175210423817,0.588501949493473,0.540556781638382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0366471485294105,0.154513394593269,0.115608096853184,0.120876255993453,0.0755326790354395,0.098117166361508,0.172468378828183,0.055843142283013,0.0899730932423686,0.135961008707697,0,0.110053611258545,0.0238650932896656,0.074930558382725,0.0622531888167965,0.128033729919821,0.131923786075207,0.163607946001013,0.0819992549722015,0.0748964051866952,0.125735317943804,0.0729583017401753,0.0448090307628235,0.148421355017489,0.096721241723504,0.0904588450746591,0.0742516023511979,0.074491100723522,0.0945173591597457,0.0383032227056179,0,0.14342199035655,0.0845301845292944,0.070344611177821,0.122644697176553,0.112956136188487
|gostat_on_MCL_coexpression=GO:0005626;insoluble fraction;0.000320721918700239;13405,13346!GO:0005605;basal lamina;0.000633274535833115;13405,12495!GO:0042383;sarcolemma;0.000633274535833115;13405,13346!GO:0030018;Z disc;0.000633274535833115;13405,13346!GO:0031674;I band;0.000653173538217342;13405,13346!GO:0005604;basement membrane;0.00169525293364805;13405,12495!GO:0030017;sarcomere;0.00169525293364805;13405,13346!GO:0044449;contractile fiber part;0.00169525293364805;13405,13346!GO:0030016;myofibril;0.00169525293364805;13405,13346!GO:0043292;contractile fiber;0.00169525293364805;13405,13346!GO:0005886;plasma membrane;0.00169525293364805;16533,13405,12495,13346!GO:0044420;extracellular matrix part;0.00202213373248082;13405,12495!GO:0006200;ATP catabolic process;0.00507115656574754;12495!GO:0009207;purine ribonucleoside triphosphate catabolic process;0.00507115656574754;12495!GO:0007517;muscle development;0.00526387084088259;13405,13346!GO:0009137;purine nucleoside diphosphate catabolic process;0.00591586310026468;12495!GO:0009181;purine ribonucleoside diphosphate catabolic process;0.00591586310026468;12495!GO:0009203;ribonucleoside triphosphate catabolic process;0.00591586310026468;12495!GO:0009146;purine nucleoside triphosphate catabolic process;0.00676043075353872;12495!GO:0009179;purine ribonucleoside diphosphate metabolic process;0.00676043075353872;12495!GO:0009135;purine nucleoside diphosphate metabolic process;0.00676043075353872;12495!GO:0009154;purine ribonucleotide catabolic process;0.00771507489645553;12495!GO:0009191;ribonucleoside diphosphate catabolic process;0.00771507489645553;12495!GO:0009143;nucleoside triphosphate catabolic process;0.00788587284542905;12495!GO:0009185;ribonucleoside diphosphate metabolic process;0.00788587284542905;12495!GO:0045213;neurotransmitter receptor metabolic process;0.00788587284542905;13405!GO:0009134;nucleoside diphosphate catabolic process;0.00788587284542905;12495!GO:0005578;proteinaceous extracellular matrix;0.00791926210191326;13405,12495!GO:0006195;purine nucleotide catabolic process;0.00827948596959745;12495!GO:0009261;ribonucleotide catabolic process;0.00827948596959745;12495!GO:0046716;muscle maintenance;0.0102999713008809;13405!GO:0017110;nucleoside-diphosphatase activity;0.0110858634557424;12495!GO:0030168;platelet activation;0.0114761859250077;12495!GO:0015269;calcium-activated potassium channel activity;0.0114761859250077;16533!GO:0016010;dystrophin-associated glycoprotein complex;0.0121607766733126;13405!GO:0022839;ion gated channel activity;0.0124610329072939;16533!GO:0009132;nucleoside diphosphate metabolic process;0.0124610329072939;12495!GO:0005227;calcium activated cation channel activity;0.0130653532658187;16533!GO:0000267;cell fraction;0.0177110898669781;13405,13346!GO:0009166;nucleotide catabolic process;0.0194918841001994;12495!GO:0043112;receptor metabolic process;0.0216042991580266;13405!GO:0065008;regulation of biological quality;0.0246739804297449;13405,12495!GO:0045121;lipid raft;0.027994529518183;13405!GO:0030055;cell-matrix junction;0.0281606306010075;13405!GO:0046034;ATP metabolic process;0.0314554543040692;12495!GO:0005509;calcium ion binding;0.0360135941448607;13405,12495!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.0360135941448607;12495!GO:0009199;ribonucleoside triphosphate metabolic process;0.0360135941448607;12495!GO:0009144;purine nucleoside triphosphate metabolic process;0.0360135941448607;12495!GO:0007596;blood coagulation;0.0360135941448607;12495!GO:0007599;hemostasis;0.0360135941448607;12495!GO:0008076;voltage-gated potassium channel complex;0.0360135941448607;16533!GO:0050817;coagulation;0.0360135941448607;12495!GO:0009141;nucleoside triphosphate metabolic process;0.0366497842386897;12495!GO:0005856;cytoskeleton;0.0366919040790318;13405,13346!GO:0009150;purine ribonucleotide metabolic process;0.0403629970653441;12495!GO:0050878;regulation of body fluid levels;0.041881593998687;12495!GO:0009259;ribonucleotide metabolic process;0.041881593998687;12495!GO:0016323;basolateral plasma membrane;0.041881593998687;13405!GO:0006163;purine nucleotide metabolic process;0.0435225948139612;12495!GO:0042060;wound healing;0.0456828279462791;12495!
|gostat_on_MCL_coexpression=GO:0005626;insoluble fraction;0.000320721918700239;13405,13346!GO:0005605;basal lamina;0.000633274535833115;13405,12495!GO:0042383;sarcolemma;0.000633274535833115;13405,13346!GO:0030018;Z disc;0.000633274535833115;13405,13346!GO:0031674;I band;0.000653173538217342;13405,13346!GO:0005604;basement membrane;0.00169525293364805;13405,12495!GO:0030017;sarcomere;0.00169525293364805;13405,13346!GO:0044449;contractile fiber part;0.00169525293364805;13405,13346!GO:0030016;myofibril;0.00169525293364805;13405,13346!GO:0043292;contractile fiber;0.00169525293364805;13405,13346!GO:0005886;plasma membrane;0.00169525293364805;16533,13405,12495,13346!GO:0044420;extracellular matrix part;0.00202213373248082;13405,12495!GO:0006200;ATP catabolic process;0.00507115656574754;12495!GO:0009207;purine ribonucleoside triphosphate catabolic process;0.00507115656574754;12495!GO:0007517;muscle development;0.00526387084088259;13405,13346!GO:0009137;purine nucleoside diphosphate catabolic process;0.00591586310026468;12495!GO:0009181;purine ribonucleoside diphosphate catabolic process;0.00591586310026468;12495!GO:0009203;ribonucleoside triphosphate catabolic process;0.00591586310026468;12495!GO:0009146;purine nucleoside triphosphate catabolic process;0.00676043075353872;12495!GO:0009179;purine ribonucleoside diphosphate metabolic process;0.00676043075353872;12495!GO:0009135;purine nucleoside diphosphate metabolic process;0.00676043075353872;12495!GO:0009154;purine ribonucleotide catabolic process;0.00771507489645553;12495!GO:0009191;ribonucleoside diphosphate catabolic process;0.00771507489645553;12495!GO:0009143;nucleoside triphosphate catabolic process;0.00788587284542905;12495!GO:0009185;ribonucleoside diphosphate metabolic process;0.00788587284542905;12495!GO:0045213;neurotransmitter receptor metabolic process;0.00788587284542905;13405!GO:0009134;nucleoside diphosphate catabolic process;0.00788587284542905;12495!GO:0005578;proteinaceous extracellular matrix;0.00791926210191326;13405,12495!GO:0006195;purine nucleotide catabolic process;0.00827948596959745;12495!GO:0009261;ribonucleotide catabolic process;0.00827948596959745;12495!GO:0046716;muscle maintenance;0.0102999713008809;13405!GO:0017110;nucleoside-diphosphatase activity;0.0110858634557424;12495!GO:0030168;platelet activation;0.0114761859250077;12495!GO:0015269;calcium-activated potassium channel activity;0.0114761859250077;16533!GO:0016010;dystrophin-associated glycoprotein complex;0.0121607766733126;13405!GO:0022839;ion gated channel activity;0.0124610329072939;16533!GO:0009132;nucleoside diphosphate metabolic process;0.0124610329072939;12495!GO:0005227;calcium activated cation channel activity;0.0130653532658187;16533!GO:0000267;cell fraction;0.0177110898669781;13405,13346!GO:0009166;nucleotide catabolic process;0.0194918841001994;12495!GO:0043112;receptor metabolic process;0.0216042991580266;13405!GO:0065008;regulation of biological quality;0.0246739804297449;13405,12495!GO:0045121;lipid raft;0.027994529518183;13405!GO:0030055;cell-matrix junction;0.0281606306010075;13405!GO:0046034;ATP metabolic process;0.0314554543040692;12495!GO:0005509;calcium ion binding;0.0360135941448607;13405,12495!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.0360135941448607;12495!GO:0009199;ribonucleoside triphosphate metabolic process;0.0360135941448607;12495!GO:0009144;purine nucleoside triphosphate metabolic process;0.0360135941448607;12495!GO:0007596;blood coagulation;0.0360135941448607;12495!GO:0007599;hemostasis;0.0360135941448607;12495!GO:0008076;voltage-gated potassium channel complex;0.0360135941448607;16533!GO:0050817;coagulation;0.0360135941448607;12495!GO:0009141;nucleoside triphosphate metabolic process;0.0366497842386897;12495!GO:0005856;cytoskeleton;0.0366919040790318;13405,13346!GO:0009150;purine ribonucleotide metabolic process;0.0403629970653441;12495!GO:0050878;regulation of body fluid levels;0.041881593998687;12495!GO:0009259;ribonucleotide metabolic process;0.041881593998687;12495!GO:0016323;basolateral plasma membrane;0.041881593998687;13405!GO:0006163;purine nucleotide metabolic process;0.0435225948139612;12495!GO:0042060;wound healing;0.0456828279462791;12495!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007100!3.42e-10!18;UBERON:0000948!3.42e-10!18;UBERON:0005498!3.42e-10!18;UBERON:0004140!3.42e-10!18;UBERON:0009881!3.42e-10!18;UBERON:0004141!3.42e-10!18;UBERON:0003084!3.42e-10!18;UBERON:0007005!3.42e-10!18;UBERON:0004139!3.42e-10!18;UBERON:0004291!3.42e-10!18;UBERON:0004535!4.56e-09!23;UBERON:0001009!4.56e-09!23;UBERON:0005153!1.22e-08!17;UBERON:0003103!4.56e-08!43;UBERON:0004872!7.54e-08!33;UBERON:0002048!8.54e-07!14;UBERON:0000117!8.54e-07!14;UBERON:0000171!8.54e-07!14;UBERON:0000170!8.54e-07!14;UBERON:0005597!8.54e-07!14;UBERON:0000118!8.54e-07!14
}}
}}

Revision as of 16:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:33863206..33863243,+p2@Kcnmb1
Mm9::chr11:33863281..33863297,+p1@Kcnmb1
Mm9::chr19:40735141..40735154,+p6@Entpd1
Mm9::chr19:40735165..40735184,+p5@Entpd1
Mm9::chr1:75358590..75358619,+p3@Des
Mm9::chrX:80194418..80194429,+p17@Dmd


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005626insoluble fraction0.000320721918700239
GO:0005605basal lamina0.000633274535833115
GO:0042383sarcolemma0.000633274535833115
GO:0030018Z disc0.000633274535833115
GO:0031674I band0.000653173538217342
GO:0005604basement membrane0.00169525293364805
GO:0030017sarcomere0.00169525293364805
GO:0044449contractile fiber part0.00169525293364805
GO:0030016myofibril0.00169525293364805
GO:0043292contractile fiber0.00169525293364805
GO:0005886plasma membrane0.00169525293364805
GO:0044420extracellular matrix part0.00202213373248082
GO:0006200ATP catabolic process0.00507115656574754
GO:0009207purine ribonucleoside triphosphate catabolic process0.00507115656574754
GO:0007517muscle development0.00526387084088259
GO:0009137purine nucleoside diphosphate catabolic process0.00591586310026468
GO:0009181purine ribonucleoside diphosphate catabolic process0.00591586310026468
GO:0009203ribonucleoside triphosphate catabolic process0.00591586310026468
GO:0009146purine nucleoside triphosphate catabolic process0.00676043075353872
GO:0009179purine ribonucleoside diphosphate metabolic process0.00676043075353872
GO:0009135purine nucleoside diphosphate metabolic process0.00676043075353872
GO:0009154purine ribonucleotide catabolic process0.00771507489645553
GO:0009191ribonucleoside diphosphate catabolic process0.00771507489645553
GO:0009143nucleoside triphosphate catabolic process0.00788587284542905
GO:0009185ribonucleoside diphosphate metabolic process0.00788587284542905
GO:0045213neurotransmitter receptor metabolic process0.00788587284542905
GO:0009134nucleoside diphosphate catabolic process0.00788587284542905
GO:0005578proteinaceous extracellular matrix0.00791926210191326
GO:0006195purine nucleotide catabolic process0.00827948596959745
GO:0009261ribonucleotide catabolic process0.00827948596959745
GO:0046716muscle maintenance0.0102999713008809
GO:0017110nucleoside-diphosphatase activity0.0110858634557424
GO:0030168platelet activation0.0114761859250077
GO:0015269calcium-activated potassium channel activity0.0114761859250077
GO:0016010dystrophin-associated glycoprotein complex0.0121607766733126
GO:0022839ion gated channel activity0.0124610329072939
GO:0009132nucleoside diphosphate metabolic process0.0124610329072939
GO:0005227calcium activated cation channel activity0.0130653532658187
GO:0000267cell fraction0.0177110898669781
GO:0009166nucleotide catabolic process0.0194918841001994
GO:0043112receptor metabolic process0.0216042991580266
GO:0065008regulation of biological quality0.0246739804297449
GO:0045121lipid raft0.027994529518183
GO:0030055cell-matrix junction0.0281606306010075
GO:0046034ATP metabolic process0.0314554543040692
GO:0005509calcium ion binding0.0360135941448607
GO:0009205purine ribonucleoside triphosphate metabolic process0.0360135941448607
GO:0009199ribonucleoside triphosphate metabolic process0.0360135941448607
GO:0009144purine nucleoside triphosphate metabolic process0.0360135941448607
GO:0007596blood coagulation0.0360135941448607
GO:0007599hemostasis0.0360135941448607
GO:0008076voltage-gated potassium channel complex0.0360135941448607
GO:0050817coagulation0.0360135941448607
GO:0009141nucleoside triphosphate metabolic process0.0366497842386897
GO:0005856cytoskeleton0.0366919040790318
GO:0009150purine ribonucleotide metabolic process0.0403629970653441
GO:0050878regulation of body fluid levels0.041881593998687
GO:0009259ribonucleotide metabolic process0.041881593998687
GO:0016323basolateral plasma membrane0.041881593998687
GO:0006163purine nucleotide metabolic process0.0435225948139612
GO:0042060wound healing0.0456828279462791



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primary circulatory organ3.42e-1018
heart3.42e-1018
primitive heart tube3.42e-1018
primary heart field3.42e-1018
anterior lateral plate mesoderm3.42e-1018
heart tube3.42e-1018
heart primordium3.42e-1018
cardiac mesoderm3.42e-1018
cardiogenic plate3.42e-1018
heart rudiment3.42e-1018
cardiovascular system4.56e-0923
circulatory system4.56e-0923
epithelial bud1.22e-0817
compound organ4.56e-0843
splanchnic layer of lateral plate mesoderm7.54e-0833
lung8.54e-0714
respiratory tube8.54e-0714
respiration organ8.54e-0714
pair of lungs8.54e-0714
lung primordium8.54e-0714
lung bud8.54e-0714


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1284&oldid=2153381"