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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000466!5.39e-12!79;UBERON:0005172!8.30e-12!49;UBERON:0005173!8.30e-12!49;UBERON:0002417!8.30e-12!49;UBERON:0000916!8.30e-12!49;UBERON:0002107!1.13e-09!22;UBERON:0007499!1.13e-09!22;UBERON:0006925!1.13e-09!22;UBERON:0009497!1.13e-09!22;UBERON:0000015!1.13e-09!22;UBERON:0002423!1.13e-09!22;UBERON:0006235!1.13e-09!22;UBERON:0008835!1.13e-09!22;UBERON:0003894!1.13e-09!22;UBERON:0004161!1.13e-09!22;UBERON:0008836!1.13e-09!22;UBERON:0005177!1.76e-09!79;UBERON:0009569!2.77e-09!66;UBERON:0009854!6.09e-09!23;UBERON:0009856!6.09e-09!23;UBERON:0005256!6.13e-09!45;UBERON:0002365!6.35e-09!25;UBERON:0002330!6.35e-09!25;UBERON:0000991!1.08e-08!18;UBERON:0005564!1.08e-08!18;UBERON:0004176!2.44e-08!17;UBERON:0009196!2.44e-08!17;UBERON:0009117!2.44e-08!17;UBERON:0002369!8.40e-08!7;UBERON:0006858!8.40e-08!7;UBERON:0002323!1.33e-07!37;UBERON:0004458!1.33e-07!37;UBERON:0000473!3.21e-07!14;UBERON:0003886!3.52e-07!38;UBERON:0003133!4.81e-07!24;UBERON:0002100!5.10e-07!90;UBERON:0002553!8.76e-07!39;UBERON:0003914!9.90e-07!47
}}
}}

Revision as of 16:29, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:64927245..64927247,-p@chr2:64927245..64927247
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Mm9::chr5:125764307..125764324,-p7@Scarb1
Mm9::chr5:125774432..125774450,-p@chr5:125774432..125774450
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Mm9::chr5:125774477..125774506,-p5@Scarb1
Mm9::chr5:125779056..125779095,-p@chr5:125779056..125779095
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Mm9::chr5:125780785..125780797,-p@chr5:125780785..125780797
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Mm9::chr5:125780900..125780910,-p@chr5:125780900..125780910
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
immaterial anatomical entity5.39e-1279
abdomen element8.30e-1249
abdominal segment element8.30e-1249
abdominal segment of trunk8.30e-1249
abdomen8.30e-1249
liver1.13e-0922
epithelial sac1.13e-0922
digestive gland1.13e-0922
epithelium of foregut-midgut junction1.13e-0922
anatomical boundary1.13e-0922
hepatobiliary system1.13e-0922
foregut-midgut junction1.13e-0922
hepatic diverticulum1.13e-0922
liver primordium1.13e-0922
septum transversum1.13e-0922
liver bud1.13e-0922
trunk region element1.76e-0979
subdivision of trunk2.77e-0966
digestive tract diverticulum6.09e-0923
sac6.09e-0923
trunk mesenchyme6.13e-0945
exocrine gland6.35e-0925
exocrine system6.35e-0925
gonad1.08e-0818
gonad primordium1.08e-0818
external genitalia2.44e-0817
indifferent external genitalia2.44e-0817
indifferent gonad2.44e-0817
adrenal gland8.40e-087
adrenal/interrenal gland8.40e-087
body cavity1.33e-0737
body cavity or lining1.33e-0737
testis3.21e-0714
body cavity precursor3.52e-0738
reproductive organ4.81e-0724
trunk5.10e-0790
anatomical cavity8.76e-0739
epithelial tube9.90e-0747


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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