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MCL coexpression mm9:1862: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0000014;single-stranded DNA specific endodeoxyribonuclease activity;0.0129841669862488;227525!GO:0008409;5'-3' exonuclease activity;0.0324533040229507;227525!GO:0004520;endodeoxyribonuclease activity;0.0340461036786531;227525!GO:0032200;telomere organization and biogenesis;0.0340461036786531;227525!GO:0000723;telomere maintenance;0.0340461036786531;227525!GO:0004536;deoxyribonuclease activity;0.0340461036786531;227525!GO:0006302;double-strand break repair;0.0340461036786531;227525!GO:0010212;response to ionizing radiation;0.0340461036786531;227525!
|gostat_on_MCL_coexpression=GO:0000014;single-stranded DNA specific endodeoxyribonuclease activity;0.0129841669862488;227525!GO:0008409;5'-3' exonuclease activity;0.0324533040229507;227525!GO:0004520;endodeoxyribonuclease activity;0.0340461036786531;227525!GO:0032200;telomere organization and biogenesis;0.0340461036786531;227525!GO:0000723;telomere maintenance;0.0340461036786531;227525!GO:0004536;deoxyribonuclease activity;0.0340461036786531;227525!GO:0006302;double-strand break repair;0.0340461036786531;227525!GO:0010212;response to ionizing radiation;0.0340461036786531;227525!
}}
}}

Revision as of 13:04, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:110601850..110601867,+p1@Osbpl8
Mm9::chr1:173770688..173770701,+p4@Cd84
Mm9::chr1:173770738..173770772,+p1@Cd84
Mm9::chr2:3341395..3341479,+p1@Dclre1c


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0000014single-stranded DNA specific endodeoxyribonuclease activity0.0129841669862488
GO:00084095'-3' exonuclease activity0.0324533040229507
GO:0004520endodeoxyribonuclease activity0.0340461036786531
GO:0032200telomere organization and biogenesis0.0340461036786531
GO:0000723telomere maintenance0.0340461036786531
GO:0004536deoxyribonuclease activity0.0340461036786531
GO:0006302double-strand break repair0.0340461036786531
GO:0010212response to ionizing radiation0.0340461036786531



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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