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MCL coexpression mm9:1081: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0008180;signalosome;0.00012312337623569;26754,26572!GO:0001701;in utero embryonic development;0.0119099506353932;19182,26572!GO:0043009;chordate embryonic development;0.02102104430441;19182,26572!GO:0009792;embryonic development ending in birth or egg hatching;0.02102104430441;19182,26572!GO:0005634;nucleus;0.036803317170155;110611,26754,19182,26572!GO:0043234;protein complex;0.036803317170155;26754,19182,26572!GO:0009790;embryonic development;0.047157877500016;19182,26572!
|gostat_on_MCL_coexpression=GO:0008180;signalosome;0.00012312337623569;26754,26572!GO:0001701;in utero embryonic development;0.0119099506353932;19182,26572!GO:0043009;chordate embryonic development;0.02102104430441;19182,26572!GO:0009792;embryonic development ending in birth or egg hatching;0.02102104430441;19182,26572!GO:0005634;nucleus;0.036803317170155;110611,26754,19182,26572!GO:0043234;protein complex;0.036803317170155;26754,19182,26572!GO:0009790;embryonic development;0.047157877500016;19182,26572!
}}
}}

Revision as of 12:51, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:59653305..59653320,-p2@Cops3
Mm9::chr11:59653330..59653345,-p3@Cops3
Mm9::chr1:10028013..10028049,-p1@Cops5
Mm9::chr1:83311026..83311046,+p1@ENSMUST00000110799
p1@ENSMUST00000159051
Mm9::chr1:95375362..95375400,-p2@Hdlbp
Mm9::chr2:90894420..90894460,+p2@Psmc3
Mm9::chr4:118842570..118842574,-p@chr4:118842570..118842574
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008180signalosome0.00012312337623569
GO:0001701in utero embryonic development0.0119099506353932
GO:0043009chordate embryonic development0.02102104430441
GO:0009792embryonic development ending in birth or egg hatching0.02102104430441
GO:0005634nucleus0.036803317170155
GO:0043234protein complex0.036803317170155
GO:0009790embryonic development0.047157877500016



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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