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MCL coexpression mm9:1063: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177128640687699,0.206356689119346,0.135798219778432,0.982556361771207,0.272329188384117,0.583296875896413,0.4444795240513,0.595464789907264,0.386949193329338,0,0,0,0.307290125850945,0.331656786275404,0.307783515127471,0,0,0,1.0478717954128,0.801799319331114,0,0,0,0.203902841136986,0.247589497206297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205694035502417,0.0887435625870942,0,0,0,0,0,0,0,0.0683455646190839,0,0,0,0,0,0,0.0851089148667383,0.178032475525152,0.177687811491981,0.0469568706916304,0,0,0,0,0,0,0,0,0.240944651400519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0407612683318473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00278863586785326,0,0,0,0,0.0526429550379996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0257923804244463,0,0,0,0.0294320462516659,0.0189230383337844,0,0,0,0,0,0,0.065928707415698,0,0,0,0,0,0,0,0.1476178069765,0,0,0,0,0,0.0655375003561515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915514965999916,0.173900225652256,0,0.0662835200988411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0664968100861445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870662137566218,0.160939271735563,0.125731435976844,0,0,0.0263666065348498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0871588832444397,0,0,0,0,0,0,0,0.00747527747129205,0,0,0,0,0,0.0882844128295319,0,0,0,0,0,0,0,0,0,0,0,0,0.0196494581759702,0,0,0,0.0447808674390055,0,0,0
|gostat_on_MCL_coexpression=GO:0030850;prostate gland development;0.0298225414540824;18095!GO:0005094;Rho GDP-dissociation inhibitor activity;0.0298225414540824;192662!GO:0005092;GDP-dissociation inhibitor activity;0.0298225414540824;192662!GO:0050680;negative regulation of epithelial cell proliferation;0.0298225414540824;18095!GO:0004017;adenylate kinase activity;0.0318072249064509;11636!GO:0007431;salivary gland development;0.0372597960816936;18095!GO:0035272;exocrine system development;0.0372597960816936;18095!GO:0019201;nucleotide kinase activity;0.0372597960816936;11636!GO:0001772;immunological synapse;0.044147658872444;192662!GO:0050678;regulation of epithelial cell proliferation;0.0476690193797403;18095!
|gostat_on_MCL_coexpression=GO:0030850;prostate gland development;0.0298225414540824;18095!GO:0005094;Rho GDP-dissociation inhibitor activity;0.0298225414540824;192662!GO:0005092;GDP-dissociation inhibitor activity;0.0298225414540824;192662!GO:0050680;negative regulation of epithelial cell proliferation;0.0298225414540824;18095!GO:0004017;adenylate kinase activity;0.0318072249064509;11636!GO:0007431;salivary gland development;0.0372597960816936;18095!GO:0035272;exocrine system development;0.0372597960816936;18095!GO:0019201;nucleotide kinase activity;0.0372597960816936;11636!GO:0001772;immunological synapse;0.044147658872444;192662!GO:0050678;regulation of epithelial cell proliferation;0.0476690193797403;18095!
}}
}}

Revision as of 12:51, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:120442510..120442551,-p2@Arhgdia
Mm9::chr2:119000878..119000908,-p@chr2:119000878..119000908
-
Mm9::chr2:32485293..32485323,+p8@Ak1
Mm9::chr3:90417204..90417214,+p@chr3:90417204..90417214
+
Mm9::chr5:114828952..114828966,+p@chr5:114828952..114828966
+
Mm9::chr5:136364908..136364912,+p@chr5:136364908..136364912
+
Mm9::chr7:52721748..52721798,-p3@Bax


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030850prostate gland development0.0298225414540824
GO:0005094Rho GDP-dissociation inhibitor activity0.0298225414540824
GO:0005092GDP-dissociation inhibitor activity0.0298225414540824
GO:0050680negative regulation of epithelial cell proliferation0.0298225414540824
GO:0004017adenylate kinase activity0.0318072249064509
GO:0007431salivary gland development0.0372597960816936
GO:0035272exocrine system development0.0372597960816936
GO:0019201nucleotide kinase activity0.0372597960816936
GO:0001772immunological synapse0.044147658872444
GO:0050678regulation of epithelial cell proliferation0.0476690193797403



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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