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MCL coexpression mm9:714: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0005578;proteinaceous extracellular matrix;0.00239169796319844;58859,12306,26561!GO:0007596;blood coagulation;0.00239169796319844;58859,12306!GO:0007599;hemostasis;0.00239169796319844;58859,12306!GO:0050817;coagulation;0.00239169796319844;58859,12306!GO:0050878;regulation of body fluid levels;0.00322337681094783;58859,12306!GO:0042060;wound healing;0.00342353840125252;58859,12306!GO:0042730;fibrinolysis;0.0111526559670423;12306!GO:0030195;negative regulation of blood coagulation;0.0111526559670423;12306!GO:0055102;lipase inhibitor activity;0.0111526559670423;12306!GO:0004859;phospholipase inhibitor activity;0.0111526559670423;12306!GO:0030193;regulation of blood coagulation;0.0111526559670423;12306!GO:0050819;negative regulation of coagulation;0.015331541432823;12306!GO:0009611;response to wounding;0.0197055026113255;58859,12306!GO:0050818;regulation of coagulation;0.0197055026113255;12306!GO:0005641;nuclear envelope lumen;0.0204330967981858;67169!GO:0030199;collagen fibril organization;0.0287183028703937;12306!GO:0005544;calcium-dependent phospholipid binding;0.0292212346136963;12306!GO:0001725;stress fiber;0.0292212346136963;12306!GO:0032432;actin filament bundle;0.0292212346136963;12306!GO:0009605;response to external stimulus;0.0292212346136963;58859,12306!GO:0005624;membrane fraction;0.0292212346136963;67169,12306!GO:0031970;organelle envelope lumen;0.0292212346136963;67169!GO:0005769;early endosome;0.0306060134462106;12306!GO:0000267;cell fraction;0.0325670350830315;67169,12306!GO:0042383;sarcolemma;0.0342599583831768;12306!GO:0016020;membrane;0.0432491869866063;246154,67169,58859,12306,26561!GO:0065008;regulation of biological quality;0.0432491869866063;58859,12306!
|gostat_on_MCL_coexpression=GO:0005578;proteinaceous extracellular matrix;0.00239169796319844;58859,12306,26561!GO:0007596;blood coagulation;0.00239169796319844;58859,12306!GO:0007599;hemostasis;0.00239169796319844;58859,12306!GO:0050817;coagulation;0.00239169796319844;58859,12306!GO:0050878;regulation of body fluid levels;0.00322337681094783;58859,12306!GO:0042060;wound healing;0.00342353840125252;58859,12306!GO:0042730;fibrinolysis;0.0111526559670423;12306!GO:0030195;negative regulation of blood coagulation;0.0111526559670423;12306!GO:0055102;lipase inhibitor activity;0.0111526559670423;12306!GO:0004859;phospholipase inhibitor activity;0.0111526559670423;12306!GO:0030193;regulation of blood coagulation;0.0111526559670423;12306!GO:0050819;negative regulation of coagulation;0.015331541432823;12306!GO:0009611;response to wounding;0.0197055026113255;58859,12306!GO:0050818;regulation of coagulation;0.0197055026113255;12306!GO:0005641;nuclear envelope lumen;0.0204330967981858;67169!GO:0030199;collagen fibril organization;0.0287183028703937;12306!GO:0005544;calcium-dependent phospholipid binding;0.0292212346136963;12306!GO:0001725;stress fiber;0.0292212346136963;12306!GO:0032432;actin filament bundle;0.0292212346136963;12306!GO:0009605;response to external stimulus;0.0292212346136963;58859,12306!GO:0005624;membrane fraction;0.0292212346136963;67169,12306!GO:0031970;organelle envelope lumen;0.0292212346136963;67169!GO:0005769;early endosome;0.0306060134462106;12306!GO:0000267;cell fraction;0.0325670350830315;67169,12306!GO:0042383;sarcolemma;0.0342599583831768;12306!GO:0016020;membrane;0.0432491869866063;246154,67169,58859,12306,26561!GO:0065008;regulation of biological quality;0.0432491869866063;58859,12306!
}}
}}

Revision as of 12:45, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:70051072..70051102,-p5@0610010K14Rik
Mm9::chr16:4639956..4639978,+p1@Vasn
Mm9::chr19:5474617..5474644,+p2@Efemp2
Mm9::chr19:5474681..5474775,+p1@Efemp2
Mm9::chr19:5474796..5474822,+p4@Efemp2
Mm9::chr19:5476132..5476138,+p@chr19:5476132..5476138
+
Mm9::chr4:155027293..155027345,-p1@Mmp23
Mm9::chr9:110526854..110526862,-p2@Nradd
Mm9::chr9:69301891..69301923,+p2@Anxa2
Mm9::chrX:70740946..70740969,+p@chrX:70740946..70740969
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005578proteinaceous extracellular matrix0.00239169796319844
GO:0007596blood coagulation0.00239169796319844
GO:0007599hemostasis0.00239169796319844
GO:0050817coagulation0.00239169796319844
GO:0050878regulation of body fluid levels0.00322337681094783
GO:0042060wound healing0.00342353840125252
GO:0042730fibrinolysis0.0111526559670423
GO:0030195negative regulation of blood coagulation0.0111526559670423
GO:0055102lipase inhibitor activity0.0111526559670423
GO:0004859phospholipase inhibitor activity0.0111526559670423
GO:0030193regulation of blood coagulation0.0111526559670423
GO:0050819negative regulation of coagulation0.015331541432823
GO:0009611response to wounding0.0197055026113255
GO:0050818regulation of coagulation0.0197055026113255
GO:0005641nuclear envelope lumen0.0204330967981858
GO:0030199collagen fibril organization0.0287183028703937
GO:0005544calcium-dependent phospholipid binding0.0292212346136963
GO:0001725stress fiber0.0292212346136963
GO:0032432actin filament bundle0.0292212346136963
GO:0009605response to external stimulus0.0292212346136963
GO:0005624membrane fraction0.0292212346136963
GO:0031970organelle envelope lumen0.0292212346136963
GO:0005769early endosome0.0306060134462106
GO:0000267cell fraction0.0325670350830315
GO:0042383sarcolemma0.0342599583831768
GO:0016020membrane0.0432491869866063
GO:0065008regulation of biological quality0.0432491869866063



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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