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{{Coexpression_clusters
{{Coexpression_clusters
|coexpression_dpi_cluster_scores_median=0.0724992894770213,0.154789347353621,0.0572682890762461,0.150594565928098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160076470556929,0,0,0,0,0.0995565284045724,0,0.0970211496880602,0.273448780838936,0.0977547706744154,0,0,0.233000982852579,0.256721782497758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392712270020621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319023409952147,0.283730650125622,0.416898123816613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904062584552435,0,0,0,0,0,0,0,0.16446763709968,0.107433877051114,0,0.179467695646126,0.0647775726819609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271850075110189,0.116640027413114,0.247363937051641,0.388512096030285,0,0.217742777398464,0.380725029966942,0.826685010279987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145661221236375,0,0,0,0,0,0,0,0,0.264299957487564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0621683679383978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144444803709627,0,0,0.0133047429825382,0,0,0,0,0,0,0,0,0,0,0,0.1301578714358,0,0,0,0,0.0402022792589852,0,0.279649371901492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0151508971302,0.834735509603642,0.31081153344173,0.543392699319961,0.929865749348953,0.866850708527792,0.823341437900647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37766222581522,1.11118369707046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46139182866781,0,0,0,0,0,0,0,0,0,0,0.162872840924645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174992895090299,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143784432664055,0,0,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0.266413775268255,0,0,0,0,0,0,0.360755756038886,0.149419651083819,1.13855400281912,0.171934336795599,0,0,0,0,0,0,0,0,0,0.392853399537651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0317229404497622,0,0,0,0.267860402174185,0.480180008657791,0,0,0,0,0,0.0855462791577618,0.226462404668981,0,0.0300822291072195,0.22149788379633,0,0,0,0,0.524579074618365,0,0,0,0.146917605400546,0
|full_id=C352_heart_mesenchymal_Skeletal_Pericytes_left_skeletal_Myoblast
|full_id=C352_heart_mesenchymal_Skeletal_Pericytes_left_skeletal_Myoblast
|gostat_on_coexpression_clusters=GO:0003012!muscle system process!0.00118410366038205!845;70$GO:0006936!muscle contraction!0.00118410366038205!845;70$GO:0055013!cardiac muscle cell development!0.00148651830919581!70$GO:0055003!cardiac myofibril assembly!0.00148651830919581!70$GO:0030240!muscle thin filament assembly!0.0023783942879532!70$GO:0014866!skeletal myofibril assembly!0.00297294910149137!70$GO:0033018!sarcoplasmic reticulum lumen!0.00339760610633285!845$GO:0030239!myofibril assembly!0.003963640412321!70$GO:0055002!striated muscle cell development!0.003963640412321!70$GO:0055001!muscle cell development!0.003963640412321!70$GO:0048644!muscle morphogenesis!0.003963640412321!70$GO:0055008!cardiac muscle morphogensis!0.003963640412321!70$GO:0048628!myoblast maturation!0.00457329660360077!70$GO:0048627!myoblast development!0.0046712270532563!70$GO:0005790!smooth endoplasmic reticulum!0.0047560884407044!845$GO:0051146!striated muscle cell differentiation!0.00594467296637925!70$GO:0031674!I band!0.00594467296637925!70$GO:0048513!organ development!0.00632426293506344!845;70$GO:0031032!actomyosin structure organization and biogenesis!0.00657004109864965!70$GO:0016528!sarcoplasm!0.00675451458088324!845$GO:0016529!sarcoplasmic reticulum!0.00675451458088324!845$GO:0005884!actin filament!0.00675451458088324!70$GO:0045445!myoblast differentiation!0.00697750176213793!70$GO:0003008!system process!0.00792261325662865!845;70$GO:0006941!striated muscle contraction!0.00792261325662865!845$GO:0048731!system development!0.00792261325662865!845;70$GO:0007015!actin filament organization!0.00792261325662865!70$GO:0048741!skeletal muscle fiber development!0.00792261325662865!70$GO:0048747!muscle fiber development!0.00792261325662865!70$GO:0008016!regulation of heart contraction!0.00792261325662865!70$GO:0008307!structural constituent of muscle!0.00792261325662865!70$GO:0048469!cell maturation!0.00792261325662865!70$GO:0042692!muscle cell differentiation!0.00792261325662865!70$GO:0060047!heart contraction!0.00792261325662865!70$GO:0003015!heart process!0.00792261325662865!70$GO:0030017!sarcomere!0.00792261325662865!70$GO:0030016!myofibril!0.00828686013085325!70$GO:0021700!developmental maturation!0.00828686013085325!70$GO:0048856!anatomical structure development!0.00891136460950274!845;70$GO:0044449!contractile fiber part!0.00891136460950274!70$GO:0005788!endoplasmic reticulum lumen!0.00905228140505522!845$GO:0043292!contractile fiber!0.00905228140505522!70$GO:0007519!skeletal muscle development!0.0092558117937575!70$GO:0007275!multicellular organismal development!0.0105081979714636!845;70$GO:0014706!striated muscle development!0.0116129870099692!70$GO:0007507!heart development!0.0121340393807748!845$GO:0008015!blood circulation!0.0197738601654783!70$GO:0003013!circulatory system process!0.0197738601654783!70$GO:0032502!developmental process!0.0200021875907591!845;70$GO:0007517!muscle development!0.0204030109931313!70$GO:0032501!multicellular organismal process!0.0250604849787898!845;70$GO:0030036!actin cytoskeleton organization and biogenesis!0.0276371402051042!70$GO:0044446!intracellular organelle part!0.0276371402051042!845;70$GO:0044422!organelle part!0.0276371402051042!845;70$GO:0030029!actin filament-based process!0.0280015573363784!70$GO:0051239!regulation of multicellular organismal process!0.0292923472237687!70$GO:0015629!actin cytoskeleton!0.030743784251895!70$GO:0044444!cytoplasmic part!0.0318106911880442!845;70$GO:0009887!organ morphogenesis!0.0362888411552046!70
|gostat_on_coexpression_clusters=GO:0003012!muscle system process!0.00118410366038205!845;70$GO:0006936!muscle contraction!0.00118410366038205!845;70$GO:0055013!cardiac muscle cell development!0.00148651830919581!70$GO:0055003!cardiac myofibril assembly!0.00148651830919581!70$GO:0030240!muscle thin filament assembly!0.0023783942879532!70$GO:0014866!skeletal myofibril assembly!0.00297294910149137!70$GO:0033018!sarcoplasmic reticulum lumen!0.00339760610633285!845$GO:0030239!myofibril assembly!0.003963640412321!70$GO:0055002!striated muscle cell development!0.003963640412321!70$GO:0055001!muscle cell development!0.003963640412321!70$GO:0048644!muscle morphogenesis!0.003963640412321!70$GO:0055008!cardiac muscle morphogensis!0.003963640412321!70$GO:0048628!myoblast maturation!0.00457329660360077!70$GO:0048627!myoblast development!0.0046712270532563!70$GO:0005790!smooth endoplasmic reticulum!0.0047560884407044!845$GO:0051146!striated muscle cell differentiation!0.00594467296637925!70$GO:0031674!I band!0.00594467296637925!70$GO:0048513!organ development!0.00632426293506344!845;70$GO:0031032!actomyosin structure organization and biogenesis!0.00657004109864965!70$GO:0016528!sarcoplasm!0.00675451458088324!845$GO:0016529!sarcoplasmic reticulum!0.00675451458088324!845$GO:0005884!actin filament!0.00675451458088324!70$GO:0045445!myoblast differentiation!0.00697750176213793!70$GO:0003008!system process!0.00792261325662865!845;70$GO:0006941!striated muscle contraction!0.00792261325662865!845$GO:0048731!system development!0.00792261325662865!845;70$GO:0007015!actin filament organization!0.00792261325662865!70$GO:0048741!skeletal muscle fiber development!0.00792261325662865!70$GO:0048747!muscle fiber development!0.00792261325662865!70$GO:0008016!regulation of heart contraction!0.00792261325662865!70$GO:0008307!structural constituent of muscle!0.00792261325662865!70$GO:0048469!cell maturation!0.00792261325662865!70$GO:0042692!muscle cell differentiation!0.00792261325662865!70$GO:0060047!heart contraction!0.00792261325662865!70$GO:0003015!heart process!0.00792261325662865!70$GO:0030017!sarcomere!0.00792261325662865!70$GO:0030016!myofibril!0.00828686013085325!70$GO:0021700!developmental maturation!0.00828686013085325!70$GO:0048856!anatomical structure development!0.00891136460950274!845;70$GO:0044449!contractile fiber part!0.00891136460950274!70$GO:0005788!endoplasmic reticulum lumen!0.00905228140505522!845$GO:0043292!contractile fiber!0.00905228140505522!70$GO:0007519!skeletal muscle development!0.0092558117937575!70$GO:0007275!multicellular organismal development!0.0105081979714636!845;70$GO:0014706!striated muscle development!0.0116129870099692!70$GO:0007507!heart development!0.0121340393807748!845$GO:0008015!blood circulation!0.0197738601654783!70$GO:0003013!circulatory system process!0.0197738601654783!70$GO:0032502!developmental process!0.0200021875907591!845;70$GO:0007517!muscle development!0.0204030109931313!70$GO:0032501!multicellular organismal process!0.0250604849787898!845;70$GO:0030036!actin cytoskeleton organization and biogenesis!0.0276371402051042!70$GO:0044446!intracellular organelle part!0.0276371402051042!845;70$GO:0044422!organelle part!0.0276371402051042!845;70$GO:0030029!actin filament-based process!0.0280015573363784!70$GO:0051239!regulation of multicellular organismal process!0.0292923472237687!70$GO:0015629!actin cytoskeleton!0.030743784251895!70$GO:0044444!cytoplasmic part!0.0318106911880442!845;70$GO:0009887!organ morphogenesis!0.0362888411552046!70

Revision as of 16:28, 12 September 2012


Full id: C352_heart_mesenchymal_Skeletal_Pericytes_left_skeletal_Myoblast



Phase1 CAGE Peaks

Hg19::chr15:35082546..35082553,-p@chr15:35082546..35082553
-
Hg19::chr15:35082559..35082571,-p@chr15:35082559..35082571
-
Hg19::chr15:35082596..35082633,-p@chr15:35082596..35082633
-
Hg19::chr15:35082635..35082647,-p@chr15:35082635..35082647
-
Hg19::chr15:35083345..35083358,-p@chr15:35083345..35083358
-
Hg19::chr15:35083365..35083406,-p@chr15:35083365..35083406
-
Hg19::chr15:35083378..35083389,+p@chr15:35083378..35083389
+
Hg19::chr15:35083404..35083435,+p@chr15:35083404..35083435
+
Hg19::chr15:35083408..35083427,-p@chr15:35083408..35083427
-
Hg19::chr15:35083428..35083456,-p@chr15:35083428..35083456
-
Hg19::chr15:35083484..35083499,-p@chr15:35083484..35083499
-
Hg19::chr15:35084289..35084305,+p@chr15:35084289..35084305
+
Hg19::chr15:35084319..35084350,-p@chr15:35084319..35084350
-
Hg19::chr15:35084352..35084363,-p@chr15:35084352..35084363
-
Hg19::chr15:35084365..35084388,-p@chr15:35084365..35084388
-
Hg19::chr15:35084404..35084427,-p@chr15:35084404..35084427
-
Hg19::chr15:35084467..35084485,-p@chr15:35084467..35084485
-
Hg19::chr15:35084643..35084652,-p9@ACTC1
Hg19::chr15:35084709..35084723,-p3@ACTC1
Hg19::chr15:35084738..35084747,-p6@ACTC1
Hg19::chr15:35085532..35085570,+p@chr15:35085532..35085570
+
Hg19::chr15:35085564..35085575,-p@chr15:35085564..35085575
-
Hg19::chr15:35085577..35085600,-p@chr15:35085577..35085600
-
Hg19::chr15:35085699..35085713,-p@chr15:35085699..35085713
-
Hg19::chr15:35085733..35085773,-p@chr15:35085733..35085773
-
Hg19::chr15:35086926..35086948,-p4@ACTC1
Hg19::chr15:35086988..35086997,-p7@ACTC1
Hg19::chr15:35087019..35087042,-p5@ACTC1
Hg19::chr15:35087544..35087555,-p@chr15:35087544..35087555
-
Hg19::chr15:35087742..35087757,-p1@ACTC1
Hg19::chr17:46824779..46824780,+p@chr17:46824779..46824780
+
Hg19::chr1:116311404..116311413,-p5@CASQ2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003012muscle system process0.00118410366038205
GO:0006936muscle contraction0.00118410366038205
GO:0055013cardiac muscle cell development0.00148651830919581
GO:0055003cardiac myofibril assembly0.00148651830919581
GO:0030240muscle thin filament assembly0.0023783942879532
GO:0014866skeletal myofibril assembly0.00297294910149137
GO:0033018sarcoplasmic reticulum lumen0.00339760610633285
GO:0030239myofibril assembly0.003963640412321
GO:0055002striated muscle cell development0.003963640412321
GO:0055001muscle cell development0.003963640412321
GO:0048644muscle morphogenesis0.003963640412321
GO:0055008cardiac muscle morphogensis0.003963640412321
GO:0048628myoblast maturation0.00457329660360077
GO:0048627myoblast development0.0046712270532563
GO:0005790smooth endoplasmic reticulum0.0047560884407044
GO:0051146striated muscle cell differentiation0.00594467296637925
GO:0031674I band0.00594467296637925
GO:0048513organ development0.00632426293506344
GO:0031032actomyosin structure organization and biogenesis0.00657004109864965
GO:0016528sarcoplasm0.00675451458088324
GO:0016529sarcoplasmic reticulum0.00675451458088324
GO:0005884actin filament0.00675451458088324
GO:0045445myoblast differentiation0.00697750176213793
GO:0003008system process0.00792261325662865
GO:0006941striated muscle contraction0.00792261325662865
GO:0048731system development0.00792261325662865
GO:0007015actin filament organization0.00792261325662865
GO:0048741skeletal muscle fiber development0.00792261325662865
GO:0048747muscle fiber development0.00792261325662865
GO:0008016regulation of heart contraction0.00792261325662865
GO:0008307structural constituent of muscle0.00792261325662865
GO:0048469cell maturation0.00792261325662865
GO:0042692muscle cell differentiation0.00792261325662865
GO:0060047heart contraction0.00792261325662865
GO:0003015heart process0.00792261325662865
GO:0030017sarcomere0.00792261325662865
GO:0030016myofibril0.00828686013085325
GO:0021700developmental maturation0.00828686013085325
GO:0048856anatomical structure development0.00891136460950274
GO:0044449contractile fiber part0.00891136460950274
GO:0005788endoplasmic reticulum lumen0.00905228140505522
GO:0043292contractile fiber0.00905228140505522
GO:0007519skeletal muscle development0.0092558117937575
GO:0007275multicellular organismal development0.0105081979714636
GO:0014706striated muscle development0.0116129870099692
GO:0007507heart development0.0121340393807748
GO:0008015blood circulation0.0197738601654783
GO:0003013circulatory system process0.0197738601654783
GO:0032502developmental process0.0200021875907591
GO:0007517muscle development0.0204030109931313
GO:0032501multicellular organismal process0.0250604849787898
GO:0030036actin cytoskeleton organization and biogenesis0.0276371402051042
GO:0044446intracellular organelle part0.0276371402051042
GO:0044422organelle part0.0276371402051042
GO:0030029actin filament-based process0.0280015573363784
GO:0051239regulation of multicellular organismal process0.0292923472237687
GO:0015629actin cytoskeleton0.030743784251895
GO:0044444cytoplasmic part0.0318106911880442
GO:0009887organ morphogenesis0.0362888411552046



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
cell of skeletal muscle4.58e-079
Uber Anatomy
Ontology termp-valuen
adult organism5.63e-15115
multi-cellular organism2.83e-08659


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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