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MacroAPE 1083:13-GTACTTTCCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.367;117.562;1246.704;1.367!2;39.643;131.232;241.959;954.166!3;1073.095;1.367;181.811;110.727!4;1.367;917.257;374.558;73.818!5;1.367;64.249...")
 
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7A5;0.0565337!11369-118A1;0.69226!11441-118I1;0.56841!10007-101B4;0.562691!11520-119H8;0.432425!11600-120H7;0.559604!11681-122H7;0.304898!11216-116B1;0.717696!12179-129A1;0.412152!12180-129A2;3.12828e-05!12181-129A3;0.000221556!12176-128I7;0.000375001!12177-128I8;0.000840077!12182-129A4;0.00185833!12183-129A5;1.05455e-05!12184-129A6;1.61383e-05!10809-111A8;0.00156549!10597-108E3;0.203834!10717-109I6;0.228232!10455-106G5;0.457236!10534-107G3;0.030379!10429-106D6;0.880653!10464-106H5;0.40348!10827-111C8;0.300907!10789-110H6;0.299413!10828-111C9;0.103668!10788-110H5;0.293021!10792-110H9;0.413065!10765-110E9;0.456086!10829-111D1;0.160259!10830-111D2;0.741001!10831-111D3;0.669124!10832-111D4;0.11675!10833-111D5;0.159009!10764-110E8;0.373235!10770-110F5;0.147328!10399-106A3;0.211526!10400-106A4;0.451334!10405-106A9;0.327832!10834-111D6;0.299904!10835-111D7;0.32767!10836-111D8;0.0967636!10837-111D9;0.206704!10699-109G6;0.191913!10802-111A1;0.185514!10796-110I4;0.419719!10010-101C1;0.127769!10810-111A9;0.900134!10421-106C7;0.971135!10708-109H6;0.00907663!12235-129G3;0.940298!12236-129G4;0.142417!12237-129G5;0.348182!10167-103B5;0.176802!10151-102I7;0.0259914!10428-106D5;0.018364!10795-110I3;0.14526!10805-111A4;0.178446!10052-101G7;0.0407926!10189-103D9;0.754869!10589-108D4;0.60085!10425-106D2;0.00675142!10427-106D4;0.101932!10702-109G9;0.00623388!10432-106D9;0.0912958!10496-107C1;0.251188!10718-109I7;0.660533!10011-101C2;0.404339!10053-101G8;0.574395!10686-109F2;6.35347e-05!10084-102B3;0.813979!10012-101C3;0.00901563!10085-102B4;0.00928813!10482-107A5;0.00133705!10419-106C5;0.630179!10080-102A8;0.673183!10760-110E4;0.324054!10709-109H7;0.454392!10710-109H8;0.96942!10703-109H1;0.54493!10719-109I8;0.00425513!10642-109A3;0.0253648!10177-103C6;0.116487!10164-103B2;0.030783!10173-103C2;0.0190234!10166-103B4;0.000871977!10083-102B2;0.0010501!10188-103D8;0.000245877!10552-107I3;0.00570417!10553-107I4;0.775841!10013-101C4;0.678126!10536-107G5;0.371031!10618-108G6;0.0387612!10423-106C9;0.777596!10785-110H2;0.849015!12238-129G6;0.633366!12239-129G7;0.101556!12240-129G8;0.278365!10416-106C2;0.215073!10801-110I9;0.249413!10766-110F1;0.00684618!10824-111C5;0.112494!10825-111C6;0.70878!10826-111C7;0.750478!10454-106G4;0.448091!10409-106B4;0.949178!10638-108I8;0.148822!10636-108I6;0.645723!10513-107D9;0.235945!10420-106C6;0.951499!10082-102B1;0.270791!10014-101C5;0.378247!10070-101I7;0.21857!10452-106G2;0.198185!10453-106G3;1.07796e-06!10449-106F8;0.00160299!10042-101F6;0.000950456!10069-101I6;0.0350541!10193-103E4;0.0866694!10631-108I1;0.015239!10438-106E6;0.289755!10488-107B2;0.693659!10196-103E7;0.872238!10071-101I8;0.211063!10071-101I8;0.466008!10041-101F5;0.000674264!10451-106G1;0.802204!10450-106F9;0.164713!10604-108F1;0.855411!10605-108F2;0.397272!10606-108F3;0.148478!10603-108E9;0.313972!10497-107C2;0.875825!10448-106F7;0.82373!10643-109A4;0.97637!10426-106D3;0.734329!10431-106D8;0.641369!10197-103E8;0.570609!10443-106F2;0.081396!10815-111B5;0.378472!10816-111B6;0.4249!10817-111B7;0.714249!10015-101C6;0.549802!10410-106B5;0.197127!10054-101G9;0.0591489!10758-110E2;0.000237544!10711-109H9;0.300515!10040-101F4;0.0969395!10470-106I2;0.00776025!10415-106C1;0.29606!10198-103E9;0.249074!10614-108G2;0.342736!10612-108F9;0.956101!10549-107H9;0.596575!10615-108G3;0.422279!10487-107B1;0.225278!10433-106E1;0.013422!10688-109F4;0.232632!10444-106F3;0.660801!10444-106F3;0.95551!10485-107A8;0.901583!10413-106B8;0.979187!10175-103C4;0.958607!10161-103A8;0.0832669!12131-128D7;0.151712!10624-108H3;0.53445!10712-109I1;0.591036!10205-103F7;0.001751!10206-103F8;0.840672!10207-103F9;0.257562!10050-101G5;0.0438711!10051-101G6;0.122641!10016-101C7;0.618246!10046-101G1;0.534641!10778-110G4;0.272661!10633-108I3;0.826528!10818-111B8;0.605301!10819-111B9;0.908611!10820-111C1;0.996978!10484-107A7;0.970022!10808-111A7;0.705663!10169-103B7;0.32031!10153-102I9;0.0299106!13425-144D5;0.018558!13433-144E4;0.0738889!13437-144E8;0.0839859!11904-125F5;0.200723!11905-125F6;3.58133e-08!10039-101F3;1.17371e-06!10791-110H8;0.0108676!10017-101C8;0.297226!10045-101F9;0.762468!10509-107D5;0.271886!10839-111E2;0.787547!10692-109F8;0.330621!10079-102A7;0.406066!10078-102A6;0.48836!10721-110A1;0.7188!10569-108B2;0.433177!10570-108B3;0.506865!10571-108B4;0.323448!10647-109A8;0.348962!10752-110D5;0.73203!10782-110G8;0.191047!10726-110A6;0.0266102!10018-101C9;0.935729!10086-102B5;0.642534!10182-103D2;0.581502!10165-103B3;0.0532441!10499-107C4;0.0773828!10408-106B3;0.432214!10019-101D1;0.127627!10068-101I5;0.563746!10075-102A3;0.809332!10077-102A5;0.380925!10727-110A7;0.0468708!10775-110G1;3.61771e-05!10412-106B7;0.00321771!12231-129F8;0.279189!12232-129F9;0.536548!12233-129G1;0.348805!12234-129G2;0.263891!10414-106B9;0.170454!10170-103B8;0.490265!10183-103D3;0.0226444!10150-102I6;0.0159054!10174-103C3;0.0295886!10155-103A2;0.0823427!10038-101F2;0.0564132!10838-111E1;0.0179843!10759-110E3;0.015742!10514-107E1;0.992149!10465-106H6;0.976387!10691-109F7;0.276281!10843-111E6;0.19477!10844-111E7;0.115857!11747-123G1;0.0638616!11748-123G2;0.610689!11749-123G3;0.262764!11750-123G4;0.563574!11751-123G5;0.328654!11840-124H4;0.504904!11752-123G6;0.158002!11753-123G7;0.464795!11754-123G8;0.855803!11755-123G9;0.789743!11756-123H1;0.348659!11833-124G6;0.639131!11760-123H5;0.5136!11836-124G9;0.814354!11758-123H3;0.970357!11835-124G8;0.820989!11762-123H7;0.155296!11838-124H2;0.44961!11757-123H2;0.537381!11759-123H4;0.900239!11761-123H6;0.365855!11842-124H6;0.988314!11837-124H1;0.832946!10568-108B1;0.354268!13230-141I8;0.417128!13231-141I9;0.0127438!10696-109G3;0.0179364!10493-107B7;0.56757!10494-107B8;0.274606!10850-111F4;0.920806!10851-111F5;0.807258!10852-111F6;0.829645!10853-111F7;0.903533!10854-111F8;0.749792!10855-111F9;0.13728!10856-111G1;0.478325!10847-111F1;0.0858091!10846-111E9;0.545736!10848-111F2;0.731281!10845-111E8;0.919592!10857-111G2;0.307163!10858-111G3;0.392293!10156-103A3;0.427109!11901-125F2;0.0384362!11902-125F3;1.56317e-06!11903-125F4;5.033e-06!10689-109F5;2.30864e-05!10648-109A9;0.572909!10784-110H1;0.739713!10744-110C6;0.822494!10772-110F7;4.88975e-06!10474-106I6;0.732978!10600-108E6;0.00754425!10684-109E9;0.937726!12226-129F3;0.156662!12227-129F4;0.801367!10508-107D4;0.0247656!10539-107G8;0.001581!10607-108F4;0.0189207!10555-107I6;0.0083818!10774-110F9;0.00991826!10637-108I7;0.0992692!10663-109C6;0.033247!10728-110A8;0.0654538!10729-110A9;0.0824396!10430-106D7;0.144049!10730-110B1;0.705201!10813-111B3;0.00899333!10812-111B2;0.0473042!10037-101F1;0.0938704!10172-103C1;0.0104428!10163-103B1;0.0491113!10076-102A4;0.0523029!10073-102A1;0.006074!10036-101E9;0.00202686!10195-103E6;0.00909305!10277-104E7;0.00427224!10434-106E2;0.140535!10550-107I1;0.545682!10545-107H5;0.790553!10544-107H4;0.872513!10704-109H2;0.824696!10510-107D6;0.566816!10558-107I9;0.659934!10020-101D2;0.178438!10732-110B3;0.235152!10049-101G4;0.472825!10698-109G5;0.568319!10437-106E5;0.479396!10417-106C3;0.173145!10035-101E8;0.436753!10171-103B9;0.0142752!10157-103A4;0.0219015!10034-101E7;0.034907!10072-101I9;0.0126352!10199-103F1;0.00081001!10200-103F2;0.62707!10697-109G4;0.0560129!10723-110A3;0.208272!10179-103C8;0.438305!10160-103A7;0.041632!10180-103C9;0.00511462!10162-103A9;0.0751487!10021-101D3;0.224729!10840-111E3;0.730199!10706-109H4;0.0036244!10033-101E6;0.0525144!10032-101E5;0.0168938!10490-107B4;0.00783959!10439-106E7;0.78714!10022-101D4;0.234276!10176-103C5;0.323307!10469-106I1;0.0130803!10067-101I4;0.281436!10411-106B6;0.00443988!10471-106I3;0.00796625!10030-101E3;0.866677!10475-106I7;0.0175076!10787-110H4;0.0419543!10477-106I9;0.865919!10695-109G2;0.0425562!11771-123I7;0.105629!11772-123I8;0.909577!11773-123I9;0.3459!10093-102C3;0.607918!10442-106F1;0.659413!10442-106F1;0.816495!10201-103F3;0.807779!10639-108I9;0.251971!11843-124H7;0.174848!11841-124H5;0.547729!10693-109F9;0.746399!10436-106E4;0.981521!10483-107A6;0.90958!10282-104F3;0.00614696!10023-101D5;0.122568!10066-101I3;0.180148!10065-101I2;0.015577!10800-110I8;0.00377772!10610-108F7;0.317882!10841-111E4;0.0223878!10541-107H1;0.123628!10842-111E5;0.497754!10562-108A4;0.00490459!10024-101D6;0.00578916!10064-101I1;0.489422!10609-108F6;0.165359!10048-101G3;0.0503413!10781-110G7;0.560922!10181-103D1;0.16838!10159-103A6;0.0751807!10056-101H2;0.237269!10737-110B8;0.000136537!10025-101D7;0.158989!10044-101F8;0.0967319!10424-106D1;0.282391!10463-106H4;0.00605273!10616-108G4;0.62378!10486-107A9;0.0618519!10062-101H8;0.141806!10202-103F4;0.259493!10158-103A5;0.936512!10441-106E9;0.418116!10031-101E4;0.00201393!10063-101H9;0.00507843!10063-101H9;0.0010094!11763-123H8;0.062767!11765-123I1;0.0205935!11768-123I4;0.0811196!10807-111A6;0.0157454!10790-110H7;0.0978985!10798-110I6;0.227418!10786-110H3;0.88437!10591-108D6;0.250725!10593-108D8;0.189815!10590-108D5;0.781375!10026-101D8;0.444258!10096-102C6;0.00765091!10168-103B6;1.25997e-05!10154-103A1;0.0679398!10209-103G2;0.099984!10061-101H7;0.0484659!10027-101D9;0.00133892!10043-101F7;0.101874!10783-110G9;0.101251!10028-101E1;0.568512!10060-101H6;0.813972!10203-103F5;0.190653!10059-101H5;0.0377898!10047-101G2;0.0322241!10029-101E2;0.366024!10058-101H4;0.606033!10418-106C4;0.00886672!10492-107B6;0.42346!10694-109G1;0.786313!10797-110I5;0.0131006!10057-101H3;0.186649!10100-102D1;0.00448345!10055-101H1;0.704128!10204-103F6;0.020177!10191-103E2;0.608201!10563-108A5;0.965297
|name=13-GTACTTTCCA,CNhs11997,BestGuess:TF65_f2_HM09(0.730812743090709),T:1367.0(19.00%),B:5104.8(12.27%),P:1e-59
|name=13-GTACTTTCCA,CNhs11997,BestGuess:TF65_f2_HM09(0.730812743090709),T:1367.0(19.00%),B:5104.8(12.27%),P:1e-59
|tomtom_result=NF-kappaB#MA0061.1;1;0.000974163;0.463701;0.560746;9;GTACTTTCCA;GGGAATTTCC;+!RELA#MA0107.1;1;0.0017998;0.856704;0.560746;9;GTACTTTCCA;GGGAATTTCC;+!GAL4#MA0299.1;2;0.00210583;1.00237;0.560746;10;GTACTTTCCA;GAGTACTGTTCCCCG;-!REL#MA0101.1;1;0.00235608;1.12149;0.560746;9;GTACTTTCCA;GGGGATTTCC;+!FOXC1#MA0032.1;-1;0.00640422;3.04841;1;8;GTACTTTCCA;TACTTACC;-!En1#MA0027.1;2;0.0083751;3.98655;1;9;GTACTTTCCA;AAGTAGTGCCC;+!SPI1#MA0080.2;-3;0.00916562;4.36283;1;6;GTACTTTCCA;CTTCCG;-!Dof3#MA0021.1;-1;0.010388;4.94467;1;6;GTACTTTCCA;CGCTTT;-!SPI1#MA0080.2;-2;0.0158107;7.52591;1;7;GTACTTTCCA;ACTTCCT;-!PBF#MA0064.1;-2;0.0158645;7.5515;1;5;GTACTTTCCA;GCTTT;-!dl_1#MA0022.1;2;0.0169911;8.08779;1;10;GTACTTTCCA;GGGGTTTTTCCC;+
}}
}}

Latest revision as of 15:03, 7 September 2012

Full Name: 13-GTACTTTCCA,CNhs11997,BestGuess:TF65_f2_HM09(0.730812743090709),T:1367.0(19.00%),B:5104.8(12.27%),P:1e-59

Motif matrix
POACGT
11.367117.5621246.7041.367
239.643131.232241.959954.166
31073.0951.367181.811110.727
41.367917.257374.55873.818
51.36764.249118.9291182.455
69.56964.2491.3671291.815
719.138385.4946.835955.533
860.1481067.6274.101235.124
91.367859.843392.329113.461
10678.03212.303370.457304.841

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NF-kappaB#MA0061.110.0009741630.4637010.5607469GTACTTTCCAGGGAATTTCC+
RELA#MA0107.110.00179980.8567040.5607469GTACTTTCCAGGGAATTTCC+
GAL4#MA0299.120.002105831.002370.56074610GTACTTTCCAGAGTACTGTTCCCCG-
REL#MA0101.110.002356081.121490.5607469GTACTTTCCAGGGGATTTCC+
FOXC1#MA0032.1-10.006404223.0484118GTACTTTCCATACTTACC-
En1#MA0027.120.00837513.9865519GTACTTTCCAAAGTAGTGCCC+
SPI1#MA0080.2-30.009165624.3628316GTACTTTCCACTTCCG-
Dof3#MA0021.1-10.0103884.9446716GTACTTTCCACGCTTT-
SPI1#MA0080.2-20.01581077.5259117GTACTTTCCAACTTCCT-
PBF#MA0064.1-20.01586457.551515GTACTTTCCAGCTTT-
dl_1#MA0022.120.01699118.08779110GTACTTTCCAGGGGTTTTTCCC+
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