MacroAPE 1083:KLF4 mES-Klf4-ChIP-Seq/Homer: Difference between revisions
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|PWM=PO;A;C;G;T!1;831;20;4216;31!2;311;4629;71;87!3;5;5068;5;20!4;4379;673;41;5!5;5;5083;5;5!6;4359;5;729;5!7;5;5083;5;5!8;5;5083;5;5!9;5;5083;5;5!10;3895;423...") |
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80-129A2;0.00454803!12181-129A3;0.0124395!12176-128I7;0.00457124!12177-128I8;0.0190971!12182-129A4;0.0232164!12183-129A5;0.00213607!12184-129A6;0.00355977!10809-111A8;0.00728733!10597-108E3;0.422933!10717-109I6;0.72996!10455-106G5;6.26455e-07!10534-107G3;0.124676!10429-106D6;0.0424282!10464-106H5;0.0755082!10827-111C8;0.0488271!10789-110H6;0.040456!10828-111C9;0.697878!10788-110H5;0.877697!10792-110H9;0.07392!10765-110E9;0.0881488!10829-111D1;0.483054!10830-111D2;0.00665954!10831-111D3;0.0358649!10832-111D4;0.0744287!10833-111D5;0.138491!10764-110E8;0.186872!10770-110F5;0.243304!10399-106A3;0.408277!10400-106A4;0.0458173!10405-106A9;0.186055!10834-111D6;0.0877717!10835-111D7;0.574814!10836-111D8;0.927908!10837-111D9;0.249634!10699-109G6;0.608509!10802-111A1;0.0785631!10796-110I4;0.278591!10010-101C1;0.00101704!10810-111A9;0.968849!10421-106C7;0.140987!10708-109H6;0.0420963!12235-129G3;0.385462!12236-129G4;2.37218e-11!12237-129G5;0.0753561!10167-103B5;1.33611e-12!10151-102I7;3.53405e-07!10428-106D5;2.99384e-06!10795-110I3;0.470828!10805-111A4;0.374455!10052-101G7;0.846582!10189-103D9;0.898575!10589-108D4;0.490433!10425-106D2;0.229243!10427-106D4;0.146688!10702-109G9;0.0944064!10432-106D9;0.189175!10496-107C1;0.00381729!10718-109I7;0.246264!10011-101C2;0.764571!10053-101G8;0.337939!10686-109F2;0.0125273!10084-102B3;0.857003!10012-101C3;6.06099e-06!10085-102B4;1.2525e-07!10482-107A5;0.00345954!10419-106C5;0.286588!10080-102A8;0.122588!10760-110E4;0.238316!10709-109H7;0.00654685!10710-109H8;6.1639e-05!10703-109H1;2.60423e-05!10719-109I8;0.615452!10642-109A3;0.0784619!10177-103C6;4.98995e-05!10164-103B2;1.46926e-05!10173-103C2;9.19067e-06!10166-103B4;2.81417e-08!10083-102B2;5.6169e-06!10188-103D8;1.98298e-08!10552-107I3;1.16784e-06!10553-107I4;0.842734!10013-101C4;2.23614e-05!10536-107G5;0.572645!10618-108G6;0.679677!10423-106C9;0.0220204!10785-110H2;0.00338415!12238-129G6;0.00930637!12239-129G7;2.54609e-07!12240-129G8;0.218473!10416-106C2;0.00205974!10801-110I9;0.174225!10766-110F1;0.30516!10824-111C5;0.674205!10825-111C6;0.119414!10826-111C7;0.121686!10454-106G4;0.221162!10409-106B4;0.873233!10638-108I8;0.739267!10636-108I6;0.375192!10513-107D9;0.00180752!10420-106C6;0.00171589!10082-102B1;0.163386!10014-101C5;0.0653596!10070-101I7;0.184422!10452-106G2;0.951349!10453-106G3;0.0222327!10449-106F8;0.00603566!10042-101F6;0.016164!10069-101I6;0.000662575!10193-103E4;0.0100085!10631-108I1;5.76806e-06!10438-106E6;0.0638587!10488-107B2;0.0010725!10196-103E7;0.0763578!10071-101I8;0.70173!10071-101I8;0.403837!10041-101F5;4.54674e-05!10451-106G1;0.0129914!10450-106F9;0.0989315!10604-108F1;0.0158908!10605-108F2;0.0769654!10606-108F3;0.00484858!10603-108E9;0.117185!10497-107C2;0.0332491!10448-106F7;0.0185585!10643-109A4;0.00789097!10426-106D3;1.34363e-05!10431-106D8;2.69277e-06!10197-103E8;0.00165986!10443-106F2;0.142443!10815-111B5;0.0172199!10816-111B6;0.037659!10817-111B7;0.107232!10015-101C6;0.020932!10410-106B5;0.0424799!10054-101G9;0.0918236!10758-110E2;0.0101943!10711-109H9;0.020341!10040-101F4;0.0230063!10470-106I2;1.9607e-06!10415-106C1;0.000325859!10198-103E9;0.000128073!10614-108G2;0.891653!10612-108F9;2.56028e-05!10549-107H9;0.0241662!10615-108G3;0.0755541!10487-107B1;0.0346047!10433-106E1;0.992538!10688-109F4;0.0426989!10444-106F3;0.00173004!10444-106F3;0.515445!10485-107A8;0.477124!10413-106B8;0.932776!10175-103C4;0.0300585!10161-103A8;0.000110966!12131-128D7;2.35244e-05!10624-108H3;0.856993!10712-109I1;0.866144!10205-103F7;0.64785!10206-103F8;0.0203857!10207-103F9;0.0195942!10050-101G5;0.0479392!10051-101G6;0.364515!10016-101C7;0.727501!10046-101G1;0.588602!10778-110G4;0.0255345!10633-108I3;0.528549!10818-111B8;0.783127!10819-111B9;0.297145!10820-111C1;0.282169!10484-107A7;0.281084!10808-111A7;0.69002!10169-103B7;0.0245187!10153-102I9;4.01411e-08!13425-144D5;5.11488e-06!13433-144E4;0.427714!13437-144E8;0.519338!11904-125F5;0.564204!11905-125F6;0.000617538!10039-101F3;1.31593e-06!10791-110H8;5.77229e-06!10017-101C8;8.81552e-05!10045-101F9;0.313908!10509-107D5;0.731459!10839-111E2;0.498555!10692-109F8;0.656389!10079-102A7;0.000393117!10078-102A6;0.277478!10721-110A1;0.744026!10569-108B2;0.38142!10570-108B3;0.791336!10571-108B4;0.661973!10647-109A8;0.257468!10752-110D5;0.0380837!10782-110G8;0.846078!10726-110A6;0.000158133!10018-101C9;0.0559569!10086-102B5;0.95707!10182-103D2;0.772134!10165-103B3;0.00010268!10499-107C4;3.55644e-05!10408-106B3;0.00459308!10019-101D1;1.99522e-06!10068-101I5;0.0726234!10075-102A3;0.440513!10077-102A5;0.434192!10727-110A7;0.872109!10775-110G1;0.902264!10412-106B7;0.531578!12231-129F8;0.0188918!12232-129F9;0.27232!12233-129G1;0.208228!12234-129G2;0.286933!10414-106B9;0.695696!10170-103B8;0.436776!10183-103D3;1.48439e-08!10150-102I6;1.3571e-08!10174-103C3;2.1621e-07!10155-103A2;0.000646286!10038-101F2;4.48497e-06!10838-111E1;0.00064884!10759-110E3;0.0238564!10514-107E1;0.617702!10465-106H6;0.628942!10691-109F7;0.536174!10843-111E6;0.000209762!10844-111E7;0.00178062!11747-123G1;0.00253108!11748-123G2;0.0737809!11749-123G3;0.13753!11750-123G4;0.354842!11751-123G5;0.265907!11840-124H4;0.18857!11752-123G6;0.711516!11753-123G7;0.951068!11754-123G8;0.260763!11755-123G9;0.015187!11756-123H1;0.101996!11833-124G6;0.612339!11760-123H5;0.219389!11836-124G9;0.376703!11758-123H3;0.28824!11835-124G8;0.73757!11762-123H7;0.287312!11838-124H2;0.518458!11757-123H2;0.295388!11759-123H4;0.842705!11761-123H6;0.0507111!11842-124H6;0.369686!11837-124H1;0.603521!10568-108B1;0.473253!13230-141I8;0.679048!13231-141I9;0.161043!10696-109G3;0.226303!10493-107B7;0.431269!10494-107B8;2.36669e-09!10850-111F4;0.536105!10851-111F5;0.00619989!10852-111F6;0.227032!10853-111F7;0.0855255!10854-111F8;0.320048!10855-111F9;0.376039!10856-111G1;0.233671!10847-111F1;0.383026!10846-111E9;0.1194!10848-111F2;0.98388!10845-111E8;0.674805!10857-111G2;0.529384!10858-111G3;0.0295983!10156-103A3;0.0282018!11901-125F2;4.14144e-07!11902-125F3;4.33664e-05!11903-125F4;2.03412e-06!10689-109F5;0.00017811!10648-109A9;0.801349!10784-110H1;0.0283082!10744-110C6;0.00903204!10772-110F7;0.495481!10474-106I6;0.275162!10600-108E6;0.831223!10684-109E9;0.251028!12226-129F3;0.219537!12227-129F4;2.77052e-06!10508-107D4;0.943094!10539-107G8;1.293e-05!10607-108F4;1.32851e-05!10555-107I6;0.000396596!10774-110F9;9.59833e-07!10637-108I7;0.0842047!10663-109C6;1.95641e-05!10728-110A8;0.0244776!10729-110A9;0.0481531!10430-106D7;0.68499!10730-110B1;0.234513!10813-111B3;0.169269!10812-111B2;0.21815!10037-101F1;0.434597!10172-103C1;2.17796e-05!10163-103B1;5.40215e-09!10076-102A4;5.33599e-07!10073-102A1;1.07418e-07!10036-101E9;0.000128394!10195-103E6;1.80102e-05!10277-104E7;5.04977e-08!10434-106E2;0.000493245!10550-107I1;7.0435e-05!10545-107H5;5.53533e-05!10544-107H4;0.025881!10704-109H2;0.140826!10510-107D6;0.695473!10558-107I9;0.18744!10020-101D2;0.409494!10732-110B3;0.0831622!10049-101G4;0.899604!10698-109G5;0.967667!10437-106E5;0.0475487!10417-106C3;0.00353311!10035-101E8;3.13236e-05!10171-103B9;8.28867e-06!10157-103A4;5.41993e-09!10034-101E7;6.70977e-08!10072-101I9;1.33342e-05!10199-103F1;8.92102e-05!10200-103F2;0.280835!10697-109G4;0.195959!10723-110A3;0.004022!10179-103C8;0.00733954!10160-103A7;2.63281e-06!10180-103C9;1.59325e-05!10162-103A9;2.00516e-06!10021-101D3;0.000730128!10840-111E3;0.0288441!10706-109H4;0.244455!10033-101E6;0.0164574!10032-101E5;1.98595e-05!10490-107B4;2.09309e-06!10439-106E7;0.000726436!10022-101D4;0.00343482!10176-103C5;0.482367!10469-106I1;9.53533e-06!10067-101I4;1.60579e-05!10411-106B6;0.029481!10471-106I3;0.00400319!10030-101E3;0.00144925!10475-106I7;0.0712234!10787-110H4;0.0383774!10477-106I9;0.0360002!10695-109G2;0.000120316!11771-123I7;0.0450935!11772-123I8;0.203101!11773-123I9;0.0705802!10093-102C3;0.0580162!10442-106F1;0.0822558!10442-106F1;0.0134493!10201-103F3;0.0255254!10639-108I9;0.0749341!11843-124H7;0.000883433!11841-124H5;1.04777e-06!10693-109F9;0.0462213!10436-106E4;0.000427774!10483-107A6;5.55355e-06!10282-104F3;0.00332043!10023-101D5;0.000182281!10066-101I3;0.00564299!10065-101I2;0.0394516!10800-110I8;0.131043!10610-108F7;0.634187!10841-111E4;0.491999!10541-107H1;0.00190685!10842-111E5;0.04817!10562-108A4;0.0756147!10024-101D6;0.694614!10064-101I1;0.00195205!10609-108F6;0.823681!10048-101G3;0.398771!10781-110G7;0.0461055!10181-103D1;0.63851!10159-103A6;7.86418e-05!10056-101H2;6.20828e-05!10737-110B8;2.73883e-06!10025-101D7;0.367418!10044-101F8;0.993967!10424-106D1;0.767451!10463-106H4;0.201319!10616-108G4;7.48202e-05!10486-107A9;0.0168073!10062-101H8;0.0449877!10202-103F4;0.238938!10158-103A5;0.867657!10441-106E9;0.000952469!10031-101E4;0.000553863!10063-101H9;3.14213e-05!10063-101H9;3.54043e-05!11763-123H8;0.0742966!11765-123I1;0.379485!11768-123I4;0.646494!10807-111A6;0.951826!10790-110H7;0.989537!10798-110I6;0.459388!10786-110H3;0.0642516!10591-108D6;0.0143396!10593-108D8;0.905839!10590-108D5;0.024041!10026-101D8;0.00977784!10096-102C6;0.773917!10168-103B6;0.893062!10154-103A1;4.64278e-05!10209-103G2;2.17151e-05!10061-101H7;0.844824!10027-101D9;0.00670124!10043-101F7;0.0337373!10783-110G9;0.341987!10028-101E1;0.739395!10060-101H6;0.971067!10203-103F5;0.0258899!10059-101H5;0.445519!10047-101G2;0.676924!10029-101E2;0.0215688!10058-101H4;0.130947!10418-106C4;0.13903!10492-107B6;0.338698!10694-109G1;0.649991!10797-110I5;0.120117!10057-101H3;0.00709506!10100-102D1;0.236409!10055-101H1;0.065472!10204-103F6;0.13525!10191-103E2;0.96115!10563-108A5;0.222049 | ||
|name=KLF4_mES-Klf4-ChIP-Seq/Homer | |name=KLF4_mES-Klf4-ChIP-Seq/Homer | ||
|tomtom_result=Klf4#MA0039.2;0;3.44912e-07;0.000164178;0.000327927;10;GCCACACCCA;GCCCCACCCA;-!AFT2#MA0270.1;-2;0.000348569;0.165919;0.165702;8;GCCACACCCA;CACACCCC;+!MET31#MA0333.1;1;0.000536633;0.255437;0.170069;8;GCCACACCCA;CGCCACACT;-!MET32#MA0334.1;1;0.00175967;0.837601;0.418252;6;GCCACACCCA;CGCCACA;+!hkb#MA0450.1;-1;0.00352839;1.67952;0.670927;9;GCCACACCCA;TCACGCCCC;-!SP1#MA0079.2;0;0.00468103;2.22817;0.741751;10;GCCACACCCA;ACCCCGCCCC;-!YPR022C#MA0436.1;-1;0.00631348;3.00522;0.841158;7;GCCACACCCA;CCCCACG;+!T#MA0009.1;0;0.00748719;3.5639;0.841158;10;GCCACACCCA;TTCACACCTAG;-!Macho-1#MA0118.1;-1;0.00941525;4.48166;0.841158;9;GCCACACCCA;GAACCCCCA;-!RREB1#MA0073.1;10;0.00970256;4.61842;0.841158;10;GCCACACCCA;CCCCAAACCACCCCCCCCCC;+!MET28#MA0332.1;-1;0.0105472;5.02045;0.841158;6;GCCACACCCA;CCACAG;-!YGR067C#MA0425.1;0;0.0116603;5.55031;0.841158;10;GCCACACCCA;ACCCCACTTTTTTG;+!RUNX1#MA0002.2;2;0.01209;5.75484;0.841158;9;GCCACACCCA;AAACCACAGAC;-!SP1#MA0079.2;-1;0.012392;5.89859;0.841158;9;GCCACACCCA;CCCCGCCCCC;+!YML081W#MA0431.1;0;0.0132709;6.31695;0.841158;9;GCCACACCCA;ACCCCGCAC;+!Hand1::Tcfe2a#MA0092.1;2;0.015567;7.40991;0.925026;8;GCCACACCCA;ATGCCAGACC;-!MIG2#MA0338.1;-1;0.0180979;8.61461;0.998691;7;GCCACACCCA;CCCCGCA;+!MIG3#MA0339.1;-1;0.0201954;9.613;0.998691;7;GCCACACCCA;CCCCGCA;+ | |||
}} | }} | ||
Latest revision as of 14:52, 7 September 2012
Full Name: KLF4_mES-Klf4-ChIP-Seq/Homer
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
|---|---|---|---|---|---|---|---|---|
| Klf4#MA0039.2 | 0 | 3.44912e-07 | 0.000164178 | 0.000327927 | 10 | GCCACACCCA | GCCCCACCCA | - |
| AFT2#MA0270.1 | -2 | 0.000348569 | 0.165919 | 0.165702 | 8 | GCCACACCCA | CACACCCC | + |
| MET31#MA0333.1 | 1 | 0.000536633 | 0.255437 | 0.170069 | 8 | GCCACACCCA | CGCCACACT | - |
| MET32#MA0334.1 | 1 | 0.00175967 | 0.837601 | 0.418252 | 6 | GCCACACCCA | CGCCACA | + |
| hkb#MA0450.1 | -1 | 0.00352839 | 1.67952 | 0.670927 | 9 | GCCACACCCA | TCACGCCCC | - |
| SP1#MA0079.2 | 0 | 0.00468103 | 2.22817 | 0.741751 | 10 | GCCACACCCA | ACCCCGCCCC | - |
| YPR022C#MA0436.1 | -1 | 0.00631348 | 3.00522 | 0.841158 | 7 | GCCACACCCA | CCCCACG | + |
| T#MA0009.1 | 0 | 0.00748719 | 3.5639 | 0.841158 | 10 | GCCACACCCA | TTCACACCTAG | - |
| Macho-1#MA0118.1 | -1 | 0.00941525 | 4.48166 | 0.841158 | 9 | GCCACACCCA | GAACCCCCA | - |
| RREB1#MA0073.1 | 10 | 0.00970256 | 4.61842 | 0.841158 | 10 | GCCACACCCA | CCCCAAACCACCCCCCCCCC | + |
| MET28#MA0332.1 | -1 | 0.0105472 | 5.02045 | 0.841158 | 6 | GCCACACCCA | CCACAG | - |
| YGR067C#MA0425.1 | 0 | 0.0116603 | 5.55031 | 0.841158 | 10 | GCCACACCCA | ACCCCACTTTTTTG | + |
| RUNX1#MA0002.2 | 2 | 0.01209 | 5.75484 | 0.841158 | 9 | GCCACACCCA | AAACCACAGAC | - |
| SP1#MA0079.2 | -1 | 0.012392 | 5.89859 | 0.841158 | 9 | GCCACACCCA | CCCCGCCCCC | + |
| YML081W#MA0431.1 | 0 | 0.0132709 | 6.31695 | 0.841158 | 9 | GCCACACCCA | ACCCCGCAC | + |
| Hand1::Tcfe2a#MA0092.1 | 2 | 0.015567 | 7.40991 | 0.925026 | 8 | GCCACACCCA | ATGCCAGACC | - |
| MIG2#MA0338.1 | -1 | 0.0180979 | 8.61461 | 0.998691 | 7 | GCCACACCCA | CCCCGCA | + |
| MIG3#MA0339.1 | -1 | 0.0201954 | 9.613 | 0.998691 | 7 | GCCACACCCA | CCCCGCA | + |
