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MacroAPE 1083:6-ATATTTGGCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;524.04;40.92;27.06;67.98!2;44.88;31.68;46.86;536.58!3;442.2;82.5;45.54;89.76!4;25.74;28.38;60.06;545.82!5;31.68;45.54;1.98;580.8!6;20.46;34....")
 
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429-106D6;0.159584!10464-106H5;0.878262!10827-111C8;0.415737!10789-110H6;0.60705!10828-111C9;0.684689!10788-110H5;0.476349!10792-110H9;0.942245!10765-110E9;0.770597!10829-111D1;0.467665!10830-111D2;0.545198!10831-111D3;0.742902!10832-111D4;0.769324!10833-111D5;0.589326!10764-110E8;0.738697!10770-110F5;0.851169!10399-106A3;0.274051!10400-106A4;0.643492!10405-106A9;0.488194!10834-111D6;0.392895!10835-111D7;0.872766!10836-111D8;0.753718!10837-111D9;0.449005!10699-109G6;0.541177!10802-111A1;0.549944!10796-110I4;0.463813!10010-101C1;0.388446!10810-111A9;0.0488534!10421-106C7;0.281123!10708-109H6;0.767916!12235-129G3;0.877982!12236-129G4;0.116511!12237-129G5;0.528339!10167-103B5;0.342059!10151-102I7;0.237537!10428-106D5;0.339119!10795-110I3;0.730343!10805-111A4;0.468192!10052-101G7;0.928834!10189-103D9;0.102965!10589-108D4;0.985002!10425-106D2;0.122459!10427-106D4;0.837783!10702-109G9;0.459179!10432-106D9;0.0480998!10496-107C1;0.109213!10718-109I7;0.0718581!10011-101C2;0.450123!10053-101G8;0.0422166!10686-109F2;0.764217!10084-102B3;0.0711942!10012-101C3;0.598002!10085-102B4;0.661032!10482-107A5;0.879385!10419-106C5;0.704611!10080-102A8;0.0324607!10760-110E4;0.781423!10709-109H7;0.0978061!10710-109H8;0.338199!10703-109H1;0.190374!10719-109I8;0.0813385!10642-109A3;0.777724!10177-103C6;0.326468!10164-103B2;0.111734!10173-103C2;0.225397!10166-103B4;0.136604!10083-102B2;0.213457!10188-103D8;0.293774!10552-107I3;0.905419!10553-107I4;0.0194993!10013-101C4;0.460356!10536-107G5;0.0493454!10618-108G6;0.633472!10423-106C9;0.129676!10785-110H2;0.231761!12238-129G6;0.444348!12239-129G7;0.156606!12240-129G8;0.444655!10416-106C2;0.212161!10801-110I9;0.5068!10766-110F1;0.173702!10824-111C5;0.587195!10825-111C6;0.525275!10826-111C7;0.575245!10454-106G4;0.530643!10409-106B4;0.505864!10638-108I8;0.496062!10636-108I6;0.667852!10513-107D9;0.649789!10420-106C6;0.143155!10082-102B1;0.0948375!10014-101C5;0.199466!10070-101I7;0.266079!10452-106G2;0.828668!10453-106G3;0.42651!10449-106F8;0.318853!10042-101F6;0.239386!10069-101I6;0.485601!10193-103E4;0.0287076!10631-108I1;0.450839!10438-106E6;0.492981!10488-107B2;0.100535!10196-103E7;0.389286!10071-101I8;0.605295!10071-101I8;0.433659!10041-101F5;0.613243!10451-106G1;0.391396!10450-106F9;0.151801!10604-108F1;0.117092!10605-108F2;0.882474!10606-108F3;0.52713!10603-108E9;0.194103!10497-107C2;0.418365!10448-106F7;0.611911!10643-109A4;0.736201!10426-106D3;0.668436!10431-106D8;0.914578!10197-103E8;0.570898!10443-106F2;0.00567013!10815-111B5;0.0544996!10816-111B6;0.749753!10817-111B7;0.756653!10015-101C6;0.733576!10410-106B5;0.0980411!10054-101G9;0.661459!10758-110E2;0.693481!10711-109H9;0.712292!10040-101F4;0.937859!10470-106I2;0.656714!10415-106C1;0.85237!10198-103E9;0.00444668!10614-108G2;0.362408!10612-108F9;0.775813!10549-107H9;0.0894669!10615-108G3;0.0614041!10487-107B1;0.84026!10433-106E1;0.725211!10688-109F4;0.820597!10444-106F3;0.832978!10444-106F3;0.474543!10485-107A8;0.254268!10413-106B8;0.0368285!10175-103C4;0.341837!10161-103A8;0.143538!12131-128D7;0.0814563!10624-108H3;0.554237!10712-109I1;0.800776!10205-103F7;0.772254!10206-103F8;0.26471!10207-103F9;0.0879595!10050-101G5;0.909961!10051-101G6;0.132898!10016-101C7;0.0568415!10046-101G1;0.0745482!10778-110G4;0.0884604!10633-108I3;0.120136!10818-111B8;0.559252!10819-111B9;0.136797!10820-111C1;0.127574!10484-107A7;0.158958!10808-111A7;0.149624!10169-103B7;0.717681!10153-102I9;0.181347!13425-144D5;0.166491!13433-144E4;0.325802!13437-144E8;0.252016!11904-125F5;0.172113!11905-125F6;0.115512!10039-101F3;0.192573!10791-110H8;0.648084!10017-101C8;0.994126!10045-101F9;0.51901!10509-107D5;0.474303!10839-111E2;0.568071!10692-109F8;0.897767!10079-102A7;0.576291!10078-102A6;0.18111!10721-110A1;0.0461442!10569-108B2;0.257752!10570-108B3;0.0334912!10571-108B4;0.263674!10647-109A8;0.121488!10752-110D5;0.741636!10782-110G8;0.44498!10726-110A6;0.270367!10018-101C9;0.223171!10086-102B5;0.253146!10182-103D2;0.146522!10165-103B3;0.267127!10499-107C4;0.173888!10408-106B3;0.521301!10019-101D1;0.0809025!10068-101I5;0.151897!10075-102A3;0.843062!10077-102A5;0.696243!10727-110A7;0.135366!10775-110G1;0.622722!10412-106B7;0.0384903!12231-129F8;0.633334!12232-129F9;0.718579!12233-129G1;0.946256!12234-129G2;0.606833!10414-106B9;0.75712!10170-103B8;0.0616654!10183-103D3;0.491705!10150-102I6;0.538995!10174-103C3;0.301952!10155-103A2;0.418166!10038-101F2;0.180124!10838-111E1;0.639159!10759-110E3;0.809765!10514-107E1;0.218109!10465-106H6;0.219788!10691-109F7;0.798537!10843-111E6;0.332318!10844-111E7;0.126062!11747-123G1;0.343897!11748-123G2;0.32386!11749-123G3;0.0452042!11750-123G4;0.424275!11751-123G5;0.093727!11840-124H4;0.210857!11752-123G6;0.446174!11753-123G7;0.185728!11754-123G8;0.62746!11755-123G9;0.466712!11756-123H1;0.710867!11833-124G6;0.584247!11760-123H5;0.867416!11836-124G9;0.757969!11758-123H3;0.492487!11835-124G8;0.029072!11762-123H7;0.115172!11838-124H2;0.250274!11757-123H2;0.364811!11759-123H4;0.294848!11761-123H6;0.6367!11842-124H6;0.564794!11837-124H1;0.689256!10568-108B1;0.181044!13230-141I8;0.00727661!13231-141I9;0.0461744!10696-109G3;0.0305536!10493-107B7;0.553539!10494-107B8;0.398482!10850-111F4;0.959195!10851-111F5;0.375467!10852-111F6;0.839111!10853-111F7;0.405525!10854-111F8;0.147859!10855-111F9;0.485955!10856-111G1;0.00042356!10847-111F1;0.324636!10846-111E9;0.756019!10848-111F2;0.563935!10845-111E8;0.139392!10857-111G2;0.514446!10858-111G3;0.415133!10156-103A3;0.514147!11901-125F2;0.312489!11902-125F3;0.595852!11903-125F4;0.493566!10689-109F5;0.42501!10648-109A9;0.504133!10784-110H1;0.225382!10744-110C6;0.53283!10772-110F7;0.344982!10474-106I6;0.214397!10600-108E6;0.930709!10684-109E9;0.669895!12226-129F3;0.834043!12227-129F4;0.988903!10508-107D4;0.47121!10539-107G8;0.0537196!10607-108F4;0.0757281!10555-107I6;0.279315!10774-110F9;0.149699!10637-108I7;0.496272!10663-109C6;0.482105!10728-110A8;0.597098!10729-110A9;0.204007!10430-106D7;0.0443458!10730-110B1;0.299377!10813-111B3;0.418311!10812-111B2;0.545571!10037-101F1;0.958056!10172-103C1;0.525559!10163-103B1;0.444309!10076-102A4;0.156596!10073-102A1;0.697559!10036-101E9;0.439269!10195-103E6;0.721696!10277-104E7;0.765044!10434-106E2;0.624372!10550-107I1;0.156299!10545-107H5;0.0610411!10544-107H4;0.988043!10704-109H2;0.192899!10510-107D6;0.000133975!10558-107I9;0.162493!10020-101D2;0.825601!10732-110B3;0.234938!10049-101G4;0.669294!10698-109G5;0.230594!10437-106E5;0.132965!10417-106C3;0.408517!10035-101E8;0.386722!10171-103B9;0.63417!10157-103A4;0.331967!10034-101E7;0.295334!10072-101I9;0.713264!10199-103F1;0.522275!10200-103F2;0.62361!10697-109G4;0.00294526!10723-110A3;0.94464!10179-103C8;0.27718!10160-103A7;0.0416987!10180-103C9;0.0463053!10162-103A9;0.0323315!10021-101D3;0.0288756!10840-111E3;0.488432!10706-109H4;0.228763!10033-101E6;0.630768!10032-101E5;0.304387!10490-107B4;0.813984!10439-106E7;0.20751!10022-101D4;0.0153592!10176-103C5;0.17016!10469-106I1;0.227051!10067-101I4;0.449282!10411-106B6;0.868665!10471-106I3;0.285612!10030-101E3;0.202565!10475-106I7;0.733667!10787-110H4;0.144577!10477-106I9;0.779177!10695-109G2;0.661574!11771-123I7;0.961982!11772-123I8;0.637884!11773-123I9;0.190991!10093-102C3;0.310425!10442-106F1;0.208877!10442-106F1;0.532101!10201-103F3;0.441183!10639-108I9;0.940769!11843-124H7;0.868188!11841-124H5;0.813508!10693-109F9;0.822071!10436-106E4;0.275272!10483-107A6;0.471966!10282-104F3;0.271366!10023-101D5;0.106254!10066-101I3;0.0102159!10065-101I2;0.00627209!10800-110I8;0.141234!10610-108F7;0.26777!10841-111E4;0.0453729!10541-107H1;0.305219!10842-111E5;0.0431485!10562-108A4;0.525698!10024-101D6;0.250881!10064-101I1;0.922189!10609-108F6;0.239937!10048-101G3;0.702976!10781-110G7;0.00280334!10181-103D1;0.337333!10159-103A6;0.435893!10056-101H2;0.0848427!10737-110B8;0.842075!10025-101D7;0.00339774!10044-101F8;0.19981!10424-106D1;0.23054!10463-106H4;0.452247!10616-108G4;0.682936!10486-107A9;0.442547!10062-101H8;0.593517!10202-103F4;0.866695!10158-103A5;0.814597!10441-106E9;0.0599989!10031-101E4;0.0851092!10063-101H9;0.737932!10063-101H9;0.492122!11763-123H8;0.253913!11765-123I1;0.239778!11768-123I4;0.0485332!10807-111A6;0.0658194!10790-110H7;0.0283132!10798-110I6;0.00738698!10786-110H3;0.743403!10591-108D6;0.397727!10593-108D8;0.632147!10590-108D5;0.0894617!10026-101D8;0.492409!10096-102C6;0.245707!10168-103B6;0.443158!10154-103A1;0.372988!10209-103G2;0.184589!10061-101H7;0.118876!10027-101D9;0.0528941!10043-101F7;0.130048!10783-110G9;0.16687!10028-101E1;0.945023!10060-101H6;0.0459981!10203-103F5;0.338211!10059-101H5;0.239554!10047-101G2;0.129194!10029-101E2;0.407047!10058-101H4;0.872799!10418-106C4;0.795232!10492-107B6;0.261054!10694-109G1;0.762254!10797-110I5;0.930933!10057-101H3;0.361716!10100-102D1;0.271144!10055-101H1;0.0954751!10204-103F6;0.875682!10191-103E2;0.568968!10563-108A5;0.262166
|name=6-ATATTTGGCA,BestGuess:MA0161.1_NFIC(0.742456156469808),T:660.0(16.57%),B:4812.3(10.56%),P:1e-27
|name=6-ATATTTGGCA,BestGuess:MA0161.1_NFIC(0.742456156469808),T:660.0(16.57%),B:4812.3(10.56%),P:1e-27
|tomtom_result=NFIC#MA0161.1;-4;0.000153136;0.0728928;0.145786;6;ATATTTGGCA;TTGGCA;+!AGL3#MA0001.1;2;0.0022661;1.07866;0.763749;8;ATATTTGGCA;CTATTTATGG;-!HAP2#MA0313.1;-4;0.00240677;1.14562;0.763749;5;ATATTTGGCA;TTGGT;+!exd#MA0222.1;-2;0.00563075;2.68024;0.902583;8;ATATTTGGCA;TTTTGACA;+!ATHB-5#MA0110.1;1;0.00569321;2.70997;0.902583;8;ATATTTGGCA;AATAATTGG;-!Nobox#MA0125.1;-1;0.0090587;4.31194;0.902583;8;ATATTTGGCA;TAATTGGT;+!Dr#MA0188.1;-1;0.00927011;4.41257;0.902583;7;ATATTTGGCA;TAATTGG;-!squamosa#MA0082.1;6;0.00973561;4.63415;0.902583;8;ATATTTGGCA;ATTTCCATTTTTGG;-!RIM101#MA0368.1;-3;0.0101189;4.81659;0.902583;7;ATATTTGGCA;CTTGGCG;-!nub#MA0453.1;0;0.0114468;5.44869;0.902583;10;ATATTTGGCA;CTAATTTGCATA;-!AG#MA0005.1;2;0.0115423;5.49416;0.902583;9;ATATTTGGCA;CCAAATTTGGT;+!Hand1::Tcfe2a#MA0092.1;-1;0.0123853;5.89542;0.902583;9;ATATTTGGCA;GGTCTGGCAT;+!TOS8#MA0408.1;-3;0.0154074;7.33392;0.977855;7;ATATTTGGCA;TTTGACAG;-!E2F1#MA0024.1;-3;0.0172106;8.19224;0.985203;7;ATATTTGGCA;TTTGGCGC;+!Cebpa#MA0102.1;1;0.0181945;8.66056;0.985203;10;ATATTTGGCA;GAGATTGCGAAA;-!SRF#MA0083.1;4;0.0194096;9.23895;0.985203;8;ATATTTGGCA;GCCCATATATGG;+!CUP9#MA0288.1;-1;0.0206445;9.82679;0.985203;9;ATATTTGGCA;AATGTGTCA;-!MCM1#MA0331.1;2;0.0206975;9.85203;0.985203;10;ATATTTGGCA;CCCAATTAGGAA;+
}}
}}

Latest revision as of 14:47, 7 September 2012

Full Name: 6-ATATTTGGCA,BestGuess:MA0161.1_NFIC(0.742456156469808),T:660.0(16.57%),B:4812.3(10.56%),P:1e-27

Motif matrix
POACGT
1524.0440.9227.0667.98
244.8831.6846.86536.58
3442.282.545.5489.76
425.7428.3860.06545.82
531.6845.541.98580.8
620.4634.9834.98569.58
769.333.0486.4271.28
823.7642.24557.0436.96
975.24501.639.643.56
10539.8860.7230.3629.04

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFIC#MA0161.1-40.0001531360.07289280.1457866ATATTTGGCATTGGCA+
AGL3#MA0001.120.00226611.078660.7637498ATATTTGGCACTATTTATGG-
HAP2#MA0313.1-40.002406771.145620.7637495ATATTTGGCATTGGT+
exd#MA0222.1-20.005630752.680240.9025838ATATTTGGCATTTTGACA+
ATHB-5#MA0110.110.005693212.709970.9025838ATATTTGGCAAATAATTGG-
Nobox#MA0125.1-10.00905874.311940.9025838ATATTTGGCATAATTGGT+
Dr#MA0188.1-10.009270114.412570.9025837ATATTTGGCATAATTGG-
squamosa#MA0082.160.009735614.634150.9025838ATATTTGGCAATTTCCATTTTTGG-
RIM101#MA0368.1-30.01011894.816590.9025837ATATTTGGCACTTGGCG-
nub#MA0453.100.01144685.448690.90258310ATATTTGGCACTAATTTGCATA-
AG#MA0005.120.01154235.494160.9025839ATATTTGGCACCAAATTTGGT+
Hand1::Tcfe2a#MA0092.1-10.01238535.895420.9025839ATATTTGGCAGGTCTGGCAT+
TOS8#MA0408.1-30.01540747.333920.9778557ATATTTGGCATTTGACAG-
E2F1#MA0024.1-30.01721068.192240.9852037ATATTTGGCATTTGGCGC+
Cebpa#MA0102.110.01819458.660560.98520310ATATTTGGCAGAGATTGCGAAA-
SRF#MA0083.140.01940969.238950.9852038ATATTTGGCAGCCCATATATGG+
CUP9#MA0288.1-10.02064459.826790.9852039ATATTTGGCAAATGTGTCA-
MCM1#MA0331.120.02069759.852030.98520310ATATTTGGCACCCAATTAGGAA+
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