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MacroAPE 1083:CAAACTTAGCC,motif480: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;77.76;592.11;65.61;74.52!2;599.4;89.1;57.51;63.99!3;583.2;59.13;76.14;91.53!4;598.59;62.37;72.9;76.14!5;81.81;572.67;65.61;89.91!6;67.23;86....")
 
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!10429-106D6;0.222916!10464-106H5;0.800265!10827-111C8;0.966573!10789-110H6;0.745935!10828-111C9;0.401472!10788-110H5;0.342792!10792-110H9;0.56457!10765-110E9;0.602781!10829-111D1;0.867455!10830-111D2;0.679353!10831-111D3;0.310491!10832-111D4;0.508373!10833-111D5;0.7474!10764-110E8;0.705626!10770-110F5;0.923495!10399-106A3;0.511724!10400-106A4;0.672214!10405-106A9;0.63761!10834-111D6;0.677709!10835-111D7;0.74861!10836-111D8;0.367998!10837-111D9;0.157029!10699-109G6;0.944944!10802-111A1;0.803925!10796-110I4;0.221166!10010-101C1;0.440161!10810-111A9;0.195676!10421-106C7;0.901065!10708-109H6;0.652154!12235-129G3;0.606655!12236-129G4;0.283294!12237-129G5;0.466836!10167-103B5;0.358578!10151-102I7;0.716279!10428-106D5;0.800782!10795-110I3;0.00768851!10805-111A4;0.0161267!10052-101G7;0.287692!10189-103D9;0.0787881!10589-108D4;0.984411!10425-106D2;0.219197!10427-106D4;0.475323!10702-109G9;0.15288!10432-106D9;0.130926!10496-107C1;0.683831!10718-109I7;0.605931!10011-101C2;0.801377!10053-101G8;0.144065!10686-109F2;0.275824!10084-102B3;0.118209!10012-101C3;0.957006!10085-102B4;0.970131!10482-107A5;0.693864!10419-106C5;0.91916!10080-102A8;0.609622!10760-110E4;0.100303!10709-109H7;0.0749391!10710-109H8;0.963789!10703-109H1;0.648756!10719-109I8;0.564505!10642-109A3;0.179745!10177-103C6;0.957505!10164-103B2;0.969788!10173-103C2;0.95128!10166-103B4;0.414332!10083-102B2;0.713181!10188-103D8;0.356388!10552-107I3;0.954329!10553-107I4;0.855535!10013-101C4;0.68376!10536-107G5;0.012304!10618-108G6;0.15908!10423-106C9;0.905054!10785-110H2;0.881416!12238-129G6;0.419814!12239-129G7;0.200679!12240-129G8;0.576608!10416-106C2;0.146439!10801-110I9;0.611726!10766-110F1;0.424398!10824-111C5;0.311691!10825-111C6;0.360626!10826-111C7;0.278925!10454-106G4;0.611086!10409-106B4;0.389893!10638-108I8;0.419465!10636-108I6;0.456787!10513-107D9;0.999891!10420-106C6;0.773853!10082-102B1;0.96962!10014-101C5;0.315099!10070-101I7;0.299946!10452-106G2;0.52336!10453-106G3;0.884682!10449-106F8;0.945973!10042-101F6;0.811007!10069-101I6;0.73709!10193-103E4;0.0324965!10631-108I1;0.807539!10438-106E6;0.530898!10488-107B2;0.238741!10196-103E7;0.863965!10071-101I8;0.234539!10071-101I8;0.370935!10041-101F5;0.972092!10451-106G1;0.129052!10450-106F9;0.257325!10604-108F1;0.945029!10605-108F2;0.742351!10606-108F3;0.168784!10603-108E9;0.590917!10497-107C2;0.763238!10448-106F7;0.928502!10643-109A4;0.613728!10426-106D3;0.469922!10431-106D8;0.903698!10197-103E8;0.873949!10443-106F2;0.169226!10815-111B5;0.583791!10816-111B6;0.836315!10817-111B7;0.859792!10015-101C6;0.81132!10410-106B5;0.0680297!10054-101G9;0.591145!10758-110E2;0.171092!10711-109H9;0.500053!10040-101F4;0.22806!10470-106I2;0.994764!10415-106C1;0.773272!10198-103E9;0.684344!10614-108G2;0.0694682!10612-108F9;0.600847!10549-107H9;0.346262!10615-108G3;0.177194!10487-107B1;0.100084!10433-106E1;2.75299e-05!10688-109F4;0.667901!10444-106F3;0.879517!10444-106F3;0.0303278!10485-107A8;0.0227016!10413-106B8;0.00630822!10175-103C4;0.000416895!10161-103A8;0.675355!12131-128D7;0.854584!10624-108H3;0.835313!10712-109I1;0.0884639!10205-103F7;0.0863429!10206-103F8;0.063096!10207-103F9;0.00978439!10050-101G5;0.429395!10051-101G6;0.194167!10016-101C7;0.22508!10046-101G1;0.147783!10778-110G4;0.0256188!10633-108I3;0.274772!10818-111B8;0.541935!10819-111B9;0.626809!10820-111C1;0.710246!10484-107A7;0.747212!10808-111A7;0.730368!10169-103B7;0.486951!10153-102I9;0.815322!13425-144D5;0.648474!13433-144E4;0.593829!13437-144E8;0.743515!11904-125F5;0.934786!11905-125F6;0.0292256!10039-101F3;0.0269877!10791-110H8;0.982217!10017-101C8;0.463585!10045-101F9;0.0582578!10509-107D5;0.05362!10839-111E2;0.140694!10692-109F8;0.382727!10079-102A7;0.483624!10078-102A6;0.0181359!10721-110A1;0.0381625!10569-108B2;0.761126!10570-108B3;0.520536!10571-108B4;0.603102!10647-109A8;0.0788478!10752-110D5;0.208017!10782-110G8;0.188989!10726-110A6;0.349792!10018-101C9;0.402593!10086-102B5;0.241095!10182-103D2;0.678077!10165-103B3;0.945297!10499-107C4;0.823286!10408-106B3;0.683532!10019-101D1;0.541029!10068-101I5;0.249802!10075-102A3;0.455679!10077-102A5;0.438431!10727-110A7;0.953488!10775-110G1;0.340987!10412-106B7;0.0735621!12231-129F8;0.906264!12232-129F9;0.87159!12233-129G1;0.675241!12234-129G2;0.928044!10414-106B9;0.767916!10170-103B8;0.106659!10183-103D3;0.803743!10150-102I6;0.829477!10174-103C3;0.877077!10155-103A2;0.626079!10038-101F2;0.705054!10838-111E1;0.859684!10759-110E3;0.336031!10514-107E1;0.25956!10465-106H6;0.50426!10691-109F7;0.798712!10843-111E6;0.00291954!10844-111E7;0.863557!11747-123G1;0.914617!11748-123G2;0.162115!11749-123G3;0.0862981!11750-123G4;0.0188385!11751-123G5;0.133925!11840-124H4;0.0909943!11752-123G6;0.258456!11753-123G7;0.656932!11754-123G8;0.167469!11755-123G9;0.160848!11756-123H1;0.482122!11833-124G6;0.621059!11760-123H5;0.0964764!11836-124G9;0.458614!11758-123H3;0.0474022!11835-124G8;0.14723!11762-123H7;0.542058!11838-124H2;0.402166!11757-123H2;0.432525!11759-123H4;0.751624!11761-123H6;0.631858!11842-124H6;0.64396!11837-124H1;0.477698!10568-108B1;0.375059!13230-141I8;0.555146!13231-141I9;0.157115!10696-109G3;0.0958761!10493-107B7;0.0618726!10494-107B8;0.44078!10850-111F4;0.0411253!10851-111F5;0.704742!10852-111F6;0.0673511!10853-111F7;0.109229!10854-111F8;0.568917!10855-111F9;0.455891!10856-111G1;0.105145!10847-111F1;0.0625829!10846-111E9;0.850402!10848-111F2;0.646503!10845-111E8;0.427335!10857-111G2;0.343528!10858-111G3;0.339057!10156-103A3;0.609803!11901-125F2;0.80455!11902-125F3;0.559943!11903-125F4;0.23988!10689-109F5;0.265391!10648-109A9;0.947634!10784-110H1;0.552589!10744-110C6;0.674575!10772-110F7;0.665474!10474-106I6;0.733806!10600-108E6;0.784143!10684-109E9;0.587802!12226-129F3;0.5831!12227-129F4;0.0181864!10508-107D4;0.687322!10539-107G8;0.160484!10607-108F4;0.585362!10555-107I6;0.524381!10774-110F9;0.987545!10637-108I7;0.166097!10663-109C6;0.0587727!10728-110A8;0.501316!10729-110A9;0.525875!10430-106D7;0.0166831!10730-110B1;0.577264!10813-111B3;0.400758!10812-111B2;0.0750613!10037-101F1;0.0854107!10172-103C1;0.946516!10163-103B1;0.637853!10076-102A4;0.775312!10073-102A1;0.919098!10036-101E9;0.968183!10195-103E6;0.975597!10277-104E7;0.921225!10434-106E2;0.562341!10550-107I1;0.46033!10545-107H5;0.103234!10544-107H4;0.718089!10704-109H2;0.427599!10510-107D6;0.0281028!10558-107I9;0.675965!10020-101D2;0.0493592!10732-110B3;0.177457!10049-101G4;0.140163!10698-109G5;0.494338!10437-106E5;0.612696!10417-106C3;0.965391!10035-101E8;0.930944!10171-103B9;0.964092!10157-103A4;0.681949!10034-101E7;0.899799!10072-101I9;0.914102!10199-103F1;0.544671!10200-103F2;0.187474!10697-109G4;0.00914595!10723-110A3;0.802011!10179-103C8;0.611124!10160-103A7;0.802762!10180-103C9;0.907017!10162-103A9;0.649275!10021-101D3;0.851098!10840-111E3;0.21257!10706-109H4;0.0455743!10033-101E6;0.355454!10032-101E5;0.901289!10490-107B4;0.979565!10439-106E7;0.764222!10022-101D4;0.633763!10176-103C5;0.04814!10469-106I1;0.811979!10067-101I4;0.0809294!10411-106B6;0.0139732!10471-106I3;0.130841!10030-101E3;0.246174!10475-106I7;0.431495!10787-110H4;0.460655!10477-106I9;0.338226!10695-109G2;0.123597!11771-123I7;0.0607906!11772-123I8;0.510479!11773-123I9;0.0728466!10093-102C3;0.129478!10442-106F1;0.622093!10442-106F1;0.306057!10201-103F3;0.251752!10639-108I9;0.281758!11843-124H7;0.951393!11841-124H5;0.658569!10693-109F9;0.673169!10436-106E4;0.971163!10483-107A6;0.9431!10282-104F3;0.856341!10023-101D5;0.132655!10066-101I3;0.0189845!10065-101I2;0.0202645!10800-110I8;0.00913763!10610-108F7;0.38544!10841-111E4;0.777879!10541-107H1;0.519198!10842-111E5;0.169897!10562-108A4;0.932495!10024-101D6;0.709481!10064-101I1;0.760116!10609-108F6;0.340126!10048-101G3;0.489504!10781-110G7;0.0329168!10181-103D1;0.283412!10159-103A6;0.790737!10056-101H2;0.859494!10737-110B8;0.0895775!10025-101D7;0.136277!10044-101F8;0.205759!10424-106D1;0.0536457!10463-106H4;0.341408!10616-108G4;0.353055!10486-107A9;0.00466692!10062-101H8;1.88122e-05!10202-103F4;0.076227!10158-103A5;0.198185!10441-106E9;0.62378!10031-101E4;0.52492!10063-101H9;0.943578!10063-101H9;0.860134!11763-123H8;0.768403!11765-123I1;0.244521!11768-123I4;0.244466!10807-111A6;0.0358351!10790-110H7;0.667671!10798-110I6;0.704002!10786-110H3;0.115205!10591-108D6;0.939715!10593-108D8;0.975737!10590-108D5;0.912489!10026-101D8;0.490836!10096-102C6;0.382367!10168-103B6;0.609753!10154-103A1;0.69837!10209-103G2;0.789574!10061-101H7;0.067184!10027-101D9;0.027443!10043-101F7;0.550175!10783-110G9;0.213877!10028-101E1;0.812524!10060-101H6;0.205187!10203-103F5;0.0721817!10059-101H5;0.0447321!10047-101G2;0.0658807!10029-101E2;0.253189!10058-101H4;0.166862!10418-106C4;0.0168769!10492-107B6;0.748288!10694-109G1;0.924138!10797-110I5;0.390765!10057-101H3;0.00195997!10100-102D1;0.0697999!10055-101H1;0.068393!10204-103F6;0.0111598!10191-103E2;0.0335241!10563-108A5;0.104926
|name=CAAACTTAGCC,motif480,CNhs11765,T:810.0(22.10%),B:10902.5(14.70%),P:1e-32
|name=CAAACTTAGCC,motif480,CNhs11765,T:810.0(22.10%),B:10902.5(14.70%),P:1e-32
|tomtom_result=Hltf#MA0109.1;-1;0.00437817;2.08401;1;10;CAAACTTAGCC;AACCTTATAT;+!ttx-3::ceh-10#MA0263.1;0;0.00517312;2.4624;1;11;CAAACTTAGCC;TTAACGAAGCCAAT;-!br_Z3#MA0012.1;0;0.00942817;4.48781;1;11;CAAACTTAGCC;TAAACTAAAAG;+!NKX3-1#MA0124.1;-1;0.0118224;5.62747;1;7;CAAACTTAGCC;ATACTTA;+!AG#MA0005.1;1;0.0128239;6.10416;1;10;CAAACTTAGCC;CCAAATTTGGT;+!Nr2e3#MA0164.1;0;0.0128914;6.13631;1;7;CAAACTTAGCC;CAAGCTT;+!AGL3#MA0001.1;1;0.0163606;7.78763;1;9;CAAACTTAGCC;CCATAAATAG;+!HNF4A#MA0114.1;0;0.020785;9.89368;1;11;CAAACTTAGCC;TGACCTTTGGCCT;-
}}
}}

Latest revision as of 14:41, 7 September 2012

Full Name: CAAACTTAGCC,motif480,CNhs11765,T:810.0(22.10%),B:10902.5(14.70%),P:1e-32

Motif matrix
POACGT
177.76592.1165.6174.52
2599.489.157.5163.99
3583.259.1376.1491.53
4598.5962.3772.976.14
581.81572.6765.6189.91
667.2386.6742.93613.17
787.4881.8172.9567.81
8587.2549.4184.2489.1
977.7678.57584.0169.66
1089.1592.1163.1865.61
1175.33591.349.4193.96

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Hltf#MA0109.1-10.004378172.08401110CAAACTTAGCCAACCTTATAT+
ttx-3::ceh-10#MA0263.100.005173122.4624111CAAACTTAGCCTTAACGAAGCCAAT-
br_Z3#MA0012.100.009428174.48781111CAAACTTAGCCTAAACTAAAAG+
NKX3-1#MA0124.1-10.01182245.6274717CAAACTTAGCCATACTTA+
AG#MA0005.110.01282396.10416110CAAACTTAGCCCCAAATTTGGT+
Nr2e3#MA0164.100.01289146.1363117CAAACTTAGCCCAAGCTT+
AGL3#MA0001.110.01636067.7876319CAAACTTAGCCCCATAAATAG+
HNF4A#MA0114.100.0207859.89368111CAAACTTAGCCTGACCTTTGGCCT-
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