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MacroAPE 1083:7-AAAAGMGCS: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;728.787;138.566;8.77;0.877!2;768.252;106.994;0.877;0.877!3;634.948;145.582;78.93;17.54!4;860.337;14.909;0.877;0.877!5;253.453;99.101;427.099...")
 
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0464-106H5;0.11093!10827-111C8;0.500842!10789-110H6;0.734715!10828-111C9;0.696668!10788-110H5;0.660096!10792-110H9;0.535819!10765-110E9;0.918955!10829-111D1;0.765053!10830-111D2;0.428683!10831-111D3;0.606915!10832-111D4;0.605911!10833-111D5;0.577573!10764-110E8;0.510311!10770-110F5;0.328168!10399-106A3;0.550421!10400-106A4;0.372959!10405-106A9;0.324796!10834-111D6;0.381555!10835-111D7;0.646642!10836-111D8;0.200205!10837-111D9;0.617887!10699-109G6;0.372785!10802-111A1;0.256588!10796-110I4;0.874715!10010-101C1;0.149853!10810-111A9;0.481369!10421-106C7;0.196969!10708-109H6;0.620401!12235-129G3;0.0381989!12236-129G4;0.848393!12237-129G5;0.147285!10167-103B5;0.487268!10151-102I7;0.233817!10428-106D5;0.297461!10795-110I3;0.396071!10805-111A4;0.287912!10052-101G7;0.481759!10189-103D9;0.719476!10589-108D4;0.428704!10425-106D2;0.899829!10427-106D4;0.052138!10702-109G9;0.984514!10432-106D9;0.370427!10496-107C1;0.063097!10718-109I7;0.301874!10011-101C2;0.720621!10053-101G8;0.600624!10686-109F2;0.144724!10084-102B3;0.21142!10012-101C3;0.180913!10085-102B4;0.23283!10482-107A5;0.433308!10419-106C5;0.17091!10080-102A8;0.0288827!10760-110E4;0.715515!10709-109H7;0.0977812!10710-109H8;0.0863582!10703-109H1;0.176852!10719-109I8;0.285619!10642-109A3;0.149055!10177-103C6;0.304327!10164-103B2;0.256415!10173-103C2;0.130008!10166-103B4;0.447755!10083-102B2;0.481688!10188-103D8;0.239205!10552-107I3;0.242222!10553-107I4;0.337898!10013-101C4;0.186357!10536-107G5;0.694744!10618-108G6;0.435932!10423-106C9;0.621272!10785-110H2;0.162623!12238-129G6;0.304931!12239-129G7;0.0508699!12240-129G8;0.53903!10416-106C2;0.0207217!10801-110I9;0.278002!10766-110F1;0.767766!10824-111C5;0.667817!10825-111C6;0.0661986!10826-111C7;0.0569006!10454-106G4;0.0454745!10409-106B4;0.0869715!10638-108I8;0.440993!10636-108I6;0.081876!10513-107D9;0.377962!10420-106C6;0.155591!10082-102B1;0.099708!10014-101C5;0.976422!10070-101I7;0.129859!10452-106G2;0.837379!10453-106G3;0.0081011!10449-106F8;0.0188945!10042-101F6;0.0128607!10069-101I6;0.490459!10193-103E4;0.379094!10631-108I1;0.200716!10438-106E6;0.16671!10488-107B2;0.33142!10196-103E7;0.33756!10071-101I8;0.707937!10071-101I8;0.498326!10041-101F5;0.540368!10451-106G1;0.28568!10450-106F9;0.129072!10604-108F1;0.193067!10605-108F2;0.0921164!10606-108F3;0.0989179!10603-108E9;0.082866!10497-107C2;0.265591!10448-106F7;0.928982!10643-109A4;0.0207723!10426-106D3;0.31454!10431-106D8;0.394745!10197-103E8;0.127969!10443-106F2;0.675854!10815-111B5;0.634657!10816-111B6;0.0595699!10817-111B7;0.0738234!10015-101C6;0.0711254!10410-106B5;0.948651!10054-101G9;0.0207886!10758-110E2;0.719721!10711-109H9;0.164594!10040-101F4;0.159081!10470-106I2;0.214603!10415-106C1;0.0641654!10198-103E9;0.483371!10614-108G2;0.30569!10612-108F9;0.306281!10549-107H9;0.352482!10615-108G3;0.0298414!10487-107B1;0.825107!10433-106E1;0.259712!10688-109F4;0.0071053!10444-106F3;0.363361!10444-106F3;0.164695!10485-107A8;0.157132!10413-106B8;0.134123!10175-103C4;0.36474!10161-103A8;0.423378!12131-128D7;0.526983!10624-108H3;0.944432!10712-109I1;0.175757!10205-103F7;0.369741!10206-103F8;0.825014!10207-103F9;0.517293!10050-101G5;0.600139!10051-101G6;0.162498!10016-101C7;0.63834!10046-101G1;0.508866!10778-110G4;0.0804726!10633-108I3;0.184814!10818-111B8;0.0122285!10819-111B9;0.0916746!10820-111C1;0.0730301!10484-107A7;0.0798483!10808-111A7;0.622143!10169-103B7;0.367741!10153-102I9;0.196506!13425-144D5;0.410244!13433-144E4;0.13201!13437-144E8;0.174753!11904-125F5;0.234496!11905-125F6;0.847459!10039-101F3;0.534622!10791-110H8;0.288337!10017-101C8;0.165324!10045-101F9;0.158187!10509-107D5;0.630397!10839-111E2;0.25985!10692-109F8;0.548521!10079-102A7;0.0757008!10078-102A6;0.669602!10721-110A1;0.772771!10569-108B2;0.210198!10570-108B3;0.513595!10571-108B4;0.307676!10647-109A8;0.668612!10752-110D5;0.0680987!10782-110G8;0.527501!10726-110A6;0.812371!10018-101C9;0.02796!10086-102B5;0.00109071!10182-103D2;0.189243!10165-103B3;0.622561!10499-107C4;0.346624!10408-106B3;0.934609!10019-101D1;0.0278549!10068-101I5;0.169736!10075-102A3;0.628996!10077-102A5;0.0341688!10727-110A7;0.0108177!10775-110G1;0.574461!10412-106B7;0.319363!12231-129F8;0.079478!12232-129F9;0.345673!12233-129G1;0.368355!12234-129G2;0.483947!10414-106B9;0.539646!10170-103B8;0.0213388!10183-103D3;0.198443!10150-102I6;0.305009!10174-103C3;0.274538!10155-103A2;0.439838!10038-101F2;0.369449!10838-111E1;0.412595!10759-110E3;0.0138342!10514-107E1;0.0615294!10465-106H6;0.0947949!10691-109F7;0.446329!10843-111E6;0.734099!10844-111E7;0.199108!11747-123G1;0.402898!11748-123G2;0.78921!11749-123G3;0.497475!11750-123G4;0.508227!11751-123G5;0.421186!11840-124H4;0.422224!11752-123G6;0.446591!11753-123G7;0.0330313!11754-123G8;0.218225!11755-123G9;0.412224!11756-123H1;0.971404!11833-124G6;0.413634!11760-123H5;0.111441!11836-124G9;0.456223!11758-123H3;0.499211!11835-124G8;0.173477!11762-123H7;0.415113!11838-124H2;0.193527!11757-123H2;0.27902!11759-123H4;0.813465!11761-123H6;0.546242!11842-124H6;0.239558!11837-124H1;0.60958!10568-108B1;0.478595!13230-141I8;0.0472333!13231-141I9;0.617005!10696-109G3;0.612422!10493-107B7;0.700682!10494-107B8;0.133037!10850-111F4;0.0318138!10851-111F5;0.150897!10852-111F6;0.326896!10853-111F7;0.395224!10854-111F8;0.268653!10855-111F9;0.200622!10856-111G1;0.481933!10847-111F1;0.320452!10846-111E9;0.0671594!10848-111F2;0.0138901!10845-111E8;0.19999!10857-111G2;0.292946!10858-111G3;0.0142032!10156-103A3;0.400647!11901-125F2;0.360608!11902-125F3;0.153862!11903-125F4;0.224639!10689-109F5;0.13115!10648-109A9;0.498256!10784-110H1;0.0596495!10744-110C6;0.136341!10772-110F7;0.237997!10474-106I6;0.773314!10600-108E6;0.494883!10684-109E9;0.0153031!12226-129F3;0.0194653!12227-129F4;0.503886!10508-107D4;0.853379!10539-107G8;0.309103!10607-108F4;0.312396!10555-107I6;0.871866!10774-110F9;0.149632!10637-108I7;0.513031!10663-109C6;0.199051!10728-110A8;0.214821!10729-110A9;0.0855486!10430-106D7;0.788316!10730-110B1;0.0930201!10813-111B3;0.451922!10812-111B2;0.417346!10037-101F1;0.409847!10172-103C1;0.197926!10163-103B1;0.316967!10076-102A4;0.331866!10073-102A1;0.227875!10036-101E9;0.524042!10195-103E6;0.264426!10277-104E7;0.284747!10434-106E2;0.279888!10550-107I1;0.184257!10545-107H5;0.10544!10544-107H4;0.280681!10704-109H2;0.0413026!10510-107D6;0.248696!10558-107I9;0.00328672!10020-101D2;0.049822!10732-110B3;0.602559!10049-101G4;0.88084!10698-109G5;0.0654937!10437-106E5;0.143955!10417-106C3;0.199342!10035-101E8;0.0862051!10171-103B9;0.250478!10157-103A4;0.382083!10034-101E7;0.316488!10072-101I9;0.261847!10199-103F1;0.643545!10200-103F2;0.117083!10697-109G4;0.899356!10723-110A3;0.39143!10179-103C8;0.318578!10160-103A7;0.250489!10180-103C9;0.165968!10162-103A9;0.111816!10021-101D3;0.175785!10840-111E3;0.586615!10706-109H4;0.933397!10033-101E6;0.860767!10032-101E5;0.184449!10490-107B4;0.249216!10439-106E7;0.290667!10022-101D4;0.0196509!10176-103C5;0.522896!10469-106I1;0.153204!10067-101I4;0.00698835!10411-106B6;0.684966!10471-106I3;0.761264!10030-101E3;0.753413!10475-106I7;0.467989!10787-110H4;0.036971!10477-106I9;0.166424!10695-109G2;0.0210959!11771-123I7;0.790021!11772-123I8;0.74527!11773-123I9;0.876107!10093-102C3;0.993964!10442-106F1;0.162744!10442-106F1;0.469908!10201-103F3;0.646162!10639-108I9;0.308505!11843-124H7;0.00590755!11841-124H5;0.648163!10693-109F9;0.348566!10436-106E4;0.541764!10483-107A6;0.116383!10282-104F3;0.0863219!10023-101D5;0.0502631!10066-101I3;0.13267!10065-101I2;0.180125!10800-110I8;0.560078!10610-108F7;0.0711518!10841-111E4;0.203459!10541-107H1;0.13487!10842-111E5;0.0213799!10562-108A4;0.184244!10024-101D6;0.75933!10064-101I1;0.0378213!10609-108F6;0.664595!10048-101G3;0.757241!10781-110G7;0.761183!10181-103D1;0.704744!10159-103A6;0.496879!10056-101H2;0.598938!10737-110B8;0.8365!10025-101D7;0.946657!10044-101F8;0.0466217!10424-106D1;0.961784!10463-106H4;0.896562!10616-108G4;0.258307!10486-107A9;0.522312!10062-101H8;0.44234!10202-103F4;0.435767!10158-103A5;0.350243!10441-106E9;0.49156!10031-101E4;0.217178!10063-101H9;0.260836!10063-101H9;0.605827!11763-123H8;0.227878!11765-123I1;0.450223!11768-123I4;0.376572!10807-111A6;0.667915!10790-110H7;0.391611!10798-110I6;0.0880202!10786-110H3;0.0576812!10591-108D6;0.125229!10593-108D8;0.188831!10590-108D5;0.0634855!10026-101D8;0.194617!10096-102C6;0.930398!10168-103B6;0.664973!10154-103A1;0.308608!10209-103G2;0.41532!10061-101H7;0.943217!10027-101D9;0.551152!10043-101F7;0.781428!10783-110G9;0.694669!10028-101E1;0.134271!10060-101H6;0.357402!10203-103F5;0.721693!10059-101H5;0.507052!10047-101G2;0.441537!10029-101E2;0.972352!10058-101H4;0.380717!10418-106C4;0.677537!10492-107B6;0.0231363!10694-109G1;0.0700752!10797-110I5;0.0144407!10057-101H3;0.390096!10100-102D1;0.423181!10055-101H1;0.830498!10204-103F6;0.64115!10191-103E2;0.583518!10563-108A5;0.461997
|name=7-AAAAGMGCS,CNhs13839,BestGuess:ZN384_f1_HM09(0.671864121688834),T:877.0(30.50%),B:9753.5(21.59%),P:1e-28
|name=7-AAAAGMGCS,CNhs13839,BestGuess:ZN384_f1_HM09(0.671864121688834),T:877.0(30.50%),B:9753.5(21.59%),P:1e-28
|tomtom_result=dl_1#MA0022.1;3;0.000576592;0.274458;0.240409;9;AAAAGCGCC;CGGAAAAACCCC;-!TBP#MA0108.2;4;0.000757592;0.360614;0.240409;9;AAAAGCGCC;GTATAAAAGGCGGGG;+!TBP#MA0108.2;4;0.000757592;0.360614;0.240409;9;AAAAGCGCC;GTATAAAAGGCGGGG;+!NDT80#MA0343.1;11;0.00294404;1.40137;0.700683;9;AAAAGCGCC;TTTCCGGCCACAAAAACGCAA;+!Dof3#MA0021.1;-1;0.00636746;3.03091;1;6;AAAAGCGCC;AAAGCG;+!Dof2#MA0020.1;-1;0.00927177;4.41336;1;6;AAAAGCGCC;AAAGCA;+!MNB1A#MA0053.1;-1;0.0099289;4.72616;1;5;AAAAGCGCC;AAAGC;+!AZF1#MA0277.1;1;0.0141026;6.71286;1;8;AAAAGCGCC;AAAAAGAAA;+!REL#MA0101.1;1;0.0199222;9.48298;1;9;AAAAGCGCC;GGAAATCCCC;-!PBF#MA0064.1;-1;0.020388;9.70467;1;5;AAAAGCGCC;AAAGC;+
}}
}}

Latest revision as of 14:36, 7 September 2012

Full Name: 7-AAAAGMGCS,CNhs13839,BestGuess:ZN384_f1_HM09(0.671864121688834),T:877.0(30.50%),B:9753.5(21.59%),P:1e-28

Motif matrix
POACGT
1728.787138.5668.770.877
2768.252106.9940.8770.877
3634.948145.58278.9317.54
4860.33714.9090.8770.877
5253.45399.101427.09998.224
6349.923449.02455.25122.802
7208.72689.454554.26424.556
833.326841.920.8770.877
945.604449.024343.78438.588

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
dl_1#MA0022.130.0005765920.2744580.2404099AAAAGCGCCCGGAAAAACCCC-
TBP#MA0108.240.0007575920.3606140.2404099AAAAGCGCCGTATAAAAGGCGGGG+
TBP#MA0108.240.0007575920.3606140.2404099AAAAGCGCCGTATAAAAGGCGGGG+
NDT80#MA0343.1110.002944041.401370.7006839AAAAGCGCCTTTCCGGCCACAAAAACGCAA+
Dof3#MA0021.1-10.006367463.0309116AAAAGCGCCAAAGCG+
Dof2#MA0020.1-10.009271774.4133616AAAAGCGCCAAAGCA+
MNB1A#MA0053.1-10.00992894.7261615AAAAGCGCCAAAGC+
AZF1#MA0277.110.01410266.7128618AAAAGCGCCAAAAAGAAA+
REL#MA0101.110.01992229.4829819AAAAGCGCCGGAAATCCCC-
PBF#MA0064.1-10.0203889.7046715AAAAGCGCCAAAGC+
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