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MacroAPE 1083:SNAI2 f1: Difference between revisions

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369-118A1;3.77145e-11!11441-118I1;1.50929e-07!10007-101B4;1.66278e-06!11520-119H8;0.000756096!11600-120H7;1.15693e-08!11681-122H7;2.70044e-08!11216-116B1;7.28837e-11!12179-129A1;1.3569e-22!12180-129A2;0.126621!12181-129A3;0.0605672!12176-128I7;0.400554!12177-128I8;0.225717!12182-129A4;0.226871!12183-129A5;0.22008!12184-129A6;0.154543!10809-111A8;0.370142!10597-108E3;0.257779!10717-109I6;0.059592!10455-106G5;0.000214791!10534-107G3;0.421651!10429-106D6;0.128876!10464-106H5;0.134797!10827-111C8;0.595868!10789-110H6;0.383892!10828-111C9;0.38984!10788-110H5;0.251742!10792-110H9;0.268141!10765-110E9;0.666596!10829-111D1;0.0869444!10830-111D2;0.347279!10831-111D3;0.222753!10832-111D4;0.183032!10833-111D5;0.0493766!10764-110E8;0.0974628!10770-110F5;0.189666!10399-106A3;0.123236!10400-106A4;0.106638!10405-106A9;0.106264!10834-111D6;0.103528!10835-111D7;0.152205!10836-111D8;0.154974!10837-111D9;0.166628!10699-109G6;0.149476!10802-111A1;0.0819693!10796-110I4;0.131968!10010-101C1;0.000124092!10810-111A9;0.770767!10421-106C7;0.154115!10708-109H6;0.456629!12235-129G3;0.105481!12236-129G4;7.10801e-16!12237-129G5;5.62141e-08!10167-103B5;1.15674e-12!10151-102I7;0.803899!10428-106D5;0.981919!10795-110I3;1.35137e-06!10805-111A4;0.389525!10052-101G7;0.963903!10189-103D9;0.0578324!10589-108D4;0.00179524!10425-106D2;0.000472207!10427-106D4;0.0425308!10702-109G9;0.721567!10432-106D9;0.621909!10496-107C1;2.6363e-06!10718-109I7;1.1099e-05!10011-101C2;0.10765!10053-101G8;0.10052!10686-109F2;0.661595!10084-102B3;8.10566e-09!10012-101C3;0.633153!10085-102B4;0.608679!10482-107A5;0.693428!10419-106C5;0.00752379!10080-102A8;0.00712156!10760-110E4;0.185554!10709-109H7;5.92811e-06!10710-109H8;3.44873e-05!10703-109H1;0.000372719!10719-109I8;0.86339!10642-109A3;0.0252387!10177-103C6;0.00849582!10164-103B2;0.70566!10173-103C2;0.775028!10166-103B4;0.834129!10083-102B2;0.667326!10188-103D8;0.401498!10552-107I3;0.447421!10553-107I4;0.358771!10013-101C4;9.38998e-18!10536-107G5;0.0814805!10618-108G6;8.43025e-05!10423-106C9;0.0189928!10785-110H2;0.0197007!12238-129G6;0.00188323!12239-129G7;1.41613e-07!12240-129G8;6.45379e-05!10416-106C2;2.58704e-06!10801-110I9;0.832974!10766-110F1;0.153344!10824-111C5;0.362734!10825-111C6;0.318798!10826-111C7;0.372642!10454-106G4;0.316914!10409-106B4;0.323704!10638-108I8;0.187137!10636-108I6;0.0855787!10513-107D9;4.34531e-05!10420-106C6;0.00064576!10082-102B1;0.284811!10014-101C5;4.53235e-05!10070-101I7;1.68841e-05!10452-106G2;0.000798467!10453-106G3;0.0622275!10449-106F8;0.0955698!10042-101F6;0.135262!10069-101I6;0.714303!10193-103E4;0.510776!10631-108I1;0.736149!10438-106E6;0.445396!10488-107B2;9.71929e-06!10196-103E7;0.499485!10071-101I8;0.000132531!10071-101I8;0.00173636!10041-101F5;0.488712!10451-106G1;0.953351!10450-106F9;0.617329!10604-108F1;0.619252!10605-108F2;0.124725!10606-108F3;0.0597481!10603-108E9;0.078055!10497-107C2;0.120867!10448-106F7;3.87618e-08!10643-109A4;0.000397833!10426-106D3;1.13648e-07!10431-106D8;6.41793e-07!10197-103E8;0.00569426!10443-106F2;0.00391064!10815-111B5;0.410652!10816-111B6;0.564337!10817-111B7;0.462492!10015-101C6;0.606588!10410-106B5;8.40718e-05!10054-101G9;0.0799284!10758-110E2;0.0655398!10711-109H9;0.00014168!10040-101F4;0.000552238!10470-106I2;0.652664!10415-106C1;6.14108e-08!10198-103E9;1.29334e-06!10614-108G2;0.00117049!10612-108F9;0.00124075!10549-107H9;2.18574e-05!10615-108G3;0.276182!10487-107B1;0.545308!10433-106E1;0.422272!10688-109F4;0.339205!10444-106F3;1.46847e-06!10444-106F3;0.00163872!10485-107A8;0.00150112!10413-106B8;6.60278e-10!10175-103C4;0.000338863!10161-103A8;0.932501!12131-128D7;0.71747!10624-108H3;0.0607064!10712-109I1;0.118092!10205-103F7;0.12239!10206-103F8;0.93033!10207-103F9;0.54793!10050-101G5;0.190217!10051-101G6;5.60815e-05!10016-101C7;0.256222!10046-101G1;0.526453!10778-110G4;0.694142!10633-108I3;0.317543!10818-111B8;0.0208106!10819-111B9;0.959006!10820-111C1;0.9583!10484-107A7;0.931728!10808-111A7;0.731233!10169-103B7;0.329969!10153-102I9;0.863999!13425-144D5;0.944059!13433-144E4;0.000712908!13437-144E8;0.00137445!11904-125F5;0.00220522!11905-125F6;0.535672!10039-101F3;0.0234332!10791-110H8;0.640362!10017-101C8;1.38758e-07!10045-101F9;5.40311e-08!10509-107D5;0.00150662!10839-111E2;0.928372!10692-109F8;0.212123!10079-102A7;0.000207075!10078-102A6;0.54776!10721-110A1;0.549705!10569-108B2;0.0812566!10570-108B3;0.351758!10571-108B4;0.715668!10647-109A8;0.232579!10752-110D5;0.0277033!10782-110G8;0.219097!10726-110A6;3.94267e-06!10018-101C9;7.46278e-06!10086-102B5;3.10475e-05!10182-103D2;0.00740114!10165-103B3;0.980757!10499-107C4;0.884657!10408-106B3;0.0659662!10019-101D1;7.02383e-07!10068-101I5;0.000539209!10075-102A3;0.0114806!10077-102A5;0.00110849!10727-110A7;0.521196!10775-110G1;0.824595!10412-106B7;0.82576!12231-129F8;1.21495e-08!12232-129F9;6.49589e-06!12233-129G1;0.000135527!12234-129G2;1.71698e-05!10414-106B9;5.23155e-08!10170-103B8;0.00158344!10183-103D3;0.761065!10150-102I6;0.826087!10174-103C3;0.911443!10155-103A2;0.243843!10038-101F2;0.440332!10838-111E1;0.452463!10759-110E3;0.022081!10514-107E1;0.100357!10465-106H6;0.0362019!10691-109F7;0.00575712!10843-111E6;0.329323!10844-111E7;0.813746!11747-123G1;0.350223!11748-123G2;0.000456913!11749-123G3;0.00178689!11750-123G4;0.000601348!11751-123G5;0.0394955!11840-124H4;0.333762!11752-123G6;0.239578!11753-123G7;0.15383!11754-123G8;0.0163586!11755-123G9;0.00120043!11756-123H1;6.78911e-08!11833-124G6;0.0284534!11760-123H5;0.0225543!11836-124G9;0.0308174!11758-123H3;0.00444386!11835-124G8;0.219265!11762-123H7;0.772417!11838-124H2;0.889284!11757-123H2;0.774547!11759-123H4;0.1787!11761-123H6;0.0014644!11842-124H6;0.608438!11837-124H1;0.232398!10568-108B1;0.501596!13230-141I8;3.18949e-06!13231-141I9;0.0478774!10696-109G3;0.0396091!10493-107B7;0.000273424!10494-107B8;0.305857!10850-111F4;0.000299928!10851-111F5;0.510976!10852-111F6;0.126375!10853-111F7;0.846706!10854-111F8;0.0343616!10855-111F9;0.00403514!10856-111G1;0.0297003!10847-111F1;0.00419786!10846-111E9;0.00178457!10848-111F2;0.982829!10845-111E8;0.134918!10857-111G2;0.596489!10858-111G3;0.0614314!10156-103A3;0.00210455!11901-125F2;0.971145!11902-125F3;0.986638!11903-125F4;0.870408!10689-109F5;0.785045!10648-109A9;0.0218058!10784-110H1;0.00530236!10744-110C6;1.78284e-05!10772-110F7;0.137352!10474-106I6;0.262214!10600-108E6;0.269603!10684-109E9;9.52425e-06!12226-129F3;2.02726e-18!12227-129F4;3.47083e-16!10508-107D4;3.6498e-07!10539-107G8;0.0145008!10607-108F4;0.000668752!10555-107I6;0.0766656!10774-110F9;0.000422483!10637-108I7;0.0501987!10663-109C6;0.00262405!10728-110A8;0.00123481!10729-110A9;0.00838321!10430-106D7;0.0344149!10730-110B1;0.28984!10813-111B3;0.00209488!10812-111B2;0.0330554!10037-101F1;0.0316326!10172-103C1;0.601673!10163-103B1;0.72018!10076-102A4;0.95796!10073-102A1;0.775397!10036-101E9;0.365015!10195-103E6;0.59172!10277-104E7;0.73996!10434-106E2;0.702244!10550-107I1;1.4816e-05!10545-107H5;0.0349234!10544-107H4;5.15227e-10!10704-109H2;1.55949e-06!10510-107D6;1.24171e-05!10558-107I9;0.0220439!10020-101D2;1.7189e-05!10732-110B3;0.312971!10049-101G4;1.7893e-05!10698-109G5;1.78403e-22!10437-106E5;0.0353411!10417-106C3;0.932142!10035-101E8;5.84772e-10!10171-103B9;0.629116!10157-103A4;0.907906!10034-101E7;0.867905!10072-101I9;0.625385!10199-103F1;0.33496!10200-103F2;2.72605e-15!10697-109G4;0.0444459!10723-110A3;0.0187893!10179-103C8;7.06457e-29!10160-103A7;0.466361!10180-103C9;0.48943!10162-103A9;5.16939e-06!10021-101D3;8.01814e-05!10840-111E3;0.000278802!10706-109H4;0.960167!10033-101E6;0.00122995!10032-101E5;0.521739!10490-107B4;0.583649!10439-106E7;0.104939!10022-101D4;3.3545e-06!10176-103C5;0.0148524!10469-106I1;0.775859!10067-101I4;2.01128e-05!10411-106B6;0.257579!10471-106I3;0.0855057!10030-101E3;0.229541!10475-106I7;0.175692!10787-110H4;0.232703!10477-106I9;0.2817!10695-109G2;1.40403e-05!11771-123I7;0.0018315!11772-123I8;2.08048e-05!11773-123I9;8.31723e-08!10093-102C3;3.00282e-09!10442-106F1;8.43905e-19!10442-106F1;0.00944792!10201-103F3;0.00690013!10639-108I9;0.00168079!11843-124H7;6.95695e-31!11841-124H5;0.783549!10693-109F9;0.0909683!10436-106E4;0.000386654!10483-107A6;1.15936e-06!10282-104F3;0.00028191!10023-101D5;0.184304!10066-101I3;0.427653!10065-101I2;0.631952!10800-110I8;0.0363135!10610-108F7;0.0122886!10841-111E4;0.0326127!10541-107H1;0.0168232!10842-111E5;0.11328!10562-108A4;0.138947!10024-101D6;1.02515e-07!10064-101I1;5.41591e-10!10609-108F6;1.64664e-05!10048-101G3;2.75168e-11!10781-110G7;0.765862!10181-103D1;1.009e-07!10159-103A6;0.771628!10056-101H2;0.988535!10737-110B8;0.677595!10025-101D7;0.00923867!10044-101F8;0.756876!10424-106D1;0.689552!10463-106H4;0.680196!10616-108G4;4.74257e-06!10486-107A9;5.81279e-10!10062-101H8;2.47473e-05!10202-103F4;0.00063975!10158-103A5;2.99991e-11!10441-106E9;0.962891!10031-101E4;0.0043828!10063-101H9;0.625065!10063-101H9;0.497619!11763-123H8;0.00142686!11765-123I1;0.126728!11768-123I4;0.243901!10807-111A6;0.201553!10790-110H7;0.305632!10798-110I6;0.434576!10786-110H3;0.1214!10591-108D6;0.00013509!10593-108D8;0.0323087!10590-108D5;9.35161e-06!10026-101D8;0.19915!10096-102C6;0.0874765!10168-103B6;0.420327!10154-103A1;0.92682!10209-103G2;0.878!10061-101H7;0.00020287!10027-101D9;0.00284448!10043-101F7;0.05352!10783-110G9;7.62006e-06!10028-101E1;0.255981!10060-101H6;1.22244e-12!10203-103F5;0.000130908!10059-101H5;0.00028492!10047-101G2;0.00381307!10029-101E2;8.67947e-15!10058-101H4;3.04983e-07!10418-106C4;0.00559819!10492-107B6;0.00057551!10694-109G1;0.52194!10797-110I5;1.48499e-05!10057-101H3;0.14183!10100-102D1;0.0333025!10055-101H1;0.296418!10204-103F6;0.16357!10191-103E2;0.0856883!10563-108A5;0.0879579
|name=SNAI2_f1
|name=SNAI2_f1
|tomtom_result=sna#MA0086.1;-1;2.86516e-06;0.00136382;0.00266258;6;CCAGGTG;CAGGTG;+!ZEB1#MA0103.1;-1;0.000111211;0.0529362;0.0516736;6;CCAGGTG;CAGGTG;-!REI1#MA0364.1;0;0.00108604;0.516953;0.223275;7;CCAGGTG;TCAGGGG;-!USF1#MA0093.1;0;0.00115307;0.54886;0.223275;7;CCAGGTG;CCACGTG;-!TYE7#MA0409.1;0;0.00146305;0.696413;0.223275;7;CCAGGTG;TCACGTG;-!Mycn#MA0104.2;-1;0.00175999;0.837755;0.223275;6;CCAGGTG;CACGTG;-!Arnt#MA0004.1;-1;0.00227047;1.08074;0.223275;6;CCAGGTG;CACGTG;+!MAX#MA0058.1;0;0.00240264;1.14365;0.223275;7;CCAGGTG;TCACGTGGTC;-!CBF1#MA0281.1;0;0.00311233;1.48147;0.248814;7;CCAGGTG;TCACGTGC;-!PHO4#MA0357.1;0;0.00428394;2.03915;0.248814;7;CCAGGTG;GCACGTGC;+!Mycn#MA0104.2;1;0.00551127;2.62337;0.259676;7;CCAGGTG;CGCACGTGGC;+!ESR1#MA0112.2;0;0.00554607;2.63993;0.259676;7;CCAGGTG;CCAGGTCACCGTGACCCC;+!T#MA0009.1;0;0.00585944;2.78909;0.259676;7;CCAGGTG;CTAGGTGTGAA;+!MYC::MAX#MA0059.1;2;0.00620698;2.95452;0.259676;7;CCAGGTG;GAGCACGTGGT;+!AFT1#MA0269.1;4;0.00644099;3.06591;0.259676;7;CCAGGTG;CCAATCGGGTGCAATATGTAA;-!CTCF#MA0139.1;6;0.00670642;3.19226;0.259676;7;CCAGGTG;TGGCCACCAGGGGGCGCTA;+!tin#MA0247.1;1;0.00709436;3.37692;0.26371;7;CCAGGTG;CTCAAGTG;+!Myc#MA0147.1;1;0.00790035;3.76057;0.26833;7;CCAGGTG;GCCACGTGCG;-!INSM1#MA0155.1;2;0.00817271;3.89021;0.26833;7;CCAGGTG;TGTCAGGGGGCG;+!EmBP-1#MA0128.1;0;0.00837365;3.98586;0.26833;7;CCAGGTG;CCACGTGT;-!h#MA0449.1;1;0.00900681;4.28724;0.269999;7;CCAGGTG;GGCACGTGCC;+!INO4#MA0322.1;0;0.010869;5.17365;0.306076;7;CCAGGTG;GCATGTGAA;+!NHLH1#MA0048.1;2;0.0116794;5.55939;0.319223;7;CCAGGTG;GCGCAGCTGCGT;+!HAC1#MA0310.1;-1;0.0125569;5.97708;0.333401;6;CCAGGTG;CACGTGTC;-!INO2#MA0321.1;0;0.0140035;6.66565;0.361481;7;CCAGGTG;GCATGTGAA;+!ceh-22#MA0264.1;2;0.0150371;7.15765;0.377672;7;CCAGGTG;TTTCAAGTGGT;-!ESR1#MA0112.2;3;0.0173499;8.25853;0.413413;7;CCAGGTG;GGCCCAGGTCACCCTGACCT;+!vnd#MA0253.1;2;0.0186931;8.89791;0.434284;7;CCAGGTG;TTTCAAGTG;+!Myf#MA0055.1;2;0.0202587;9.64316;0.448215;7;CCAGGTG;CAGCAGCTGCTG;-!TAL1::TCF3#MA0091.1;1;0.0202587;9.64316;0.448215;7;CCAGGTG;AACAGATGGTCG;-
}}
}}

Latest revision as of 14:32, 7 September 2012

Full Name: SNAI2_f1

Motif matrix
POACGT
10.25000000000000022.251.2499999999999982.25
20.06.00.00.0
36.00.00.00.0
40.00.06.00.0
50.00.06.00.0
60.00.00.06.0
70.00.06.00.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
sna#MA0086.1-12.86516e-060.001363820.002662586CCAGGTGCAGGTG+
ZEB1#MA0103.1-10.0001112110.05293620.05167366CCAGGTGCAGGTG-
REI1#MA0364.100.001086040.5169530.2232757CCAGGTGTCAGGGG-
USF1#MA0093.100.001153070.548860.2232757CCAGGTGCCACGTG-
TYE7#MA0409.100.001463050.6964130.2232757CCAGGTGTCACGTG-
Mycn#MA0104.2-10.001759990.8377550.2232756CCAGGTGCACGTG-
Arnt#MA0004.1-10.002270471.080740.2232756CCAGGTGCACGTG+
MAX#MA0058.100.002402641.143650.2232757CCAGGTGTCACGTGGTC-
CBF1#MA0281.100.003112331.481470.2488147CCAGGTGTCACGTGC-
PHO4#MA0357.100.004283942.039150.2488147CCAGGTGGCACGTGC+
Mycn#MA0104.210.005511272.623370.2596767CCAGGTGCGCACGTGGC+
ESR1#MA0112.200.005546072.639930.2596767CCAGGTGCCAGGTCACCGTGACCCC+
T#MA0009.100.005859442.789090.2596767CCAGGTGCTAGGTGTGAA+
MYC::MAX#MA0059.120.006206982.954520.2596767CCAGGTGGAGCACGTGGT+
AFT1#MA0269.140.006440993.065910.2596767CCAGGTGCCAATCGGGTGCAATATGTAA-
CTCF#MA0139.160.006706423.192260.2596767CCAGGTGTGGCCACCAGGGGGCGCTA+
tin#MA0247.110.007094363.376920.263717CCAGGTGCTCAAGTG+
Myc#MA0147.110.007900353.760570.268337CCAGGTGGCCACGTGCG-
INSM1#MA0155.120.008172713.890210.268337CCAGGTGTGTCAGGGGGCG+
EmBP-1#MA0128.100.008373653.985860.268337CCAGGTGCCACGTGT-
h#MA0449.110.009006814.287240.2699997CCAGGTGGGCACGTGCC+
INO4#MA0322.100.0108695.173650.3060767CCAGGTGGCATGTGAA+
NHLH1#MA0048.120.01167945.559390.3192237CCAGGTGGCGCAGCTGCGT+
HAC1#MA0310.1-10.01255695.977080.3334016CCAGGTGCACGTGTC-
INO2#MA0321.100.01400356.665650.3614817CCAGGTGGCATGTGAA+
ceh-22#MA0264.120.01503717.157650.3776727CCAGGTGTTTCAAGTGGT-
ESR1#MA0112.230.01734998.258530.4134137CCAGGTGGGCCCAGGTCACCCTGACCT+
vnd#MA0253.120.01869318.897910.4342847CCAGGTGTTTCAAGTG+
Myf#MA0055.120.02025879.643160.4482157CCAGGTGCAGCAGCTGCTG-
TAL1::TCF3#MA0091.110.02025879.643160.4482157CCAGGTGAACAGATGGTCG-
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