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MacroAPE 1083:5-CGRAWAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;19.285;644.385;0.665;0.665!2;0.665;61.845;588.525;13.965!3;303.24;57.855;259.35;45.22!4;361.76;52.535;182.875;67.83!5;327.18;0.665;37.905;29...")
 
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179-129A1;0.591751!12180-129A2;0.0278063!12181-129A3;0.0278191!12176-128I7;0.0343832!12177-128I8;0.0419729!12182-129A4;0.0409808!12183-129A5;0.0175983!12184-129A6;0.0179234!10809-111A8;0.0150704!10597-108E3;0.125348!10717-109I6;0.00682754!10455-106G5;0.0503081!10534-107G3;0.0155716!10429-106D6;0.0136638!10464-106H5;0.0115901!10827-111C8;0.199802!10789-110H6;0.034509!10828-111C9;0.199965!10788-110H5;0.20924!10792-110H9;0.0532695!10765-110E9;0.12022!10829-111D1;0.208549!10830-111D2;0.093486!10831-111D3;0.0740112!10832-111D4;0.0158571!10833-111D5;0.0571703!10764-110E8;0.0741048!10770-110F5;0.12826!10399-106A3;0.135013!10400-106A4;0.0970554!10405-106A9;0.126653!10834-111D6;0.0759433!10835-111D7;0.138867!10836-111D8;0.0410159!10837-111D9;0.0258261!10699-109G6;0.142687!10802-111A1;0.0886369!10796-110I4;0.0260801!10010-101C1;0.00127269!10810-111A9;0.135484!10421-106C7;0.0992926!10708-109H6;0.128425!12235-129G3;0.23035!12236-129G4;0.765879!12237-129G5;0.181707!10167-103B5;0.475033!10151-102I7;0.0700345!10428-106D5;0.0870296!10795-110I3;0.544967!10805-111A4;0.0185814!10052-101G7;0.0629465!10189-103D9;0.0634495!10589-108D4;0.183802!10425-106D2;0.540346!10427-106D4;0.72594!10702-109G9;0.0737144!10432-106D9;0.0213668!10496-107C1;0.00935322!10718-109I7;0.0059398!10011-101C2;0.215606!10053-101G8;0.0320308!10686-109F2;0.0512346!10084-102B3;0.667205!10012-101C3;0.030479!10085-102B4;0.0386793!10482-107A5;0.038501!10419-106C5;0.0473547!10080-102A8;0.0445617!10760-110E4;0.421474!10709-109H7;0.0365299!10710-109H8;0.0232075!10703-109H1;0.00225115!10719-109I8;0.850069!10642-109A3;0.673389!10177-103C6;0.790876!10164-103B2;0.0274914!10173-103C2;0.0553798!10166-103B4;0.477211!10083-102B2;0.356865!10188-103D8;0.205972!10552-107I3;0.0731436!10553-107I4;0.00904969!10013-101C4;0.142729!10536-107G5;0.0233506!10618-108G6;0.753609!10423-106C9;0.0300995!10785-110H2;0.0484194!12238-129G6;0.0422984!12239-129G7;0.0574627!12240-129G8;0.201628!10416-106C2;0.223439!10801-110I9;0.319327!10766-110F1;0.0511151!10824-111C5;0.0209444!10825-111C6;0.0206858!10826-111C7;0.0199876!10454-106G4;0.0165192!10409-106B4;0.125879!10638-108I8;0.0186661!10636-108I6;0.159552!10513-107D9;0.00465271!10420-106C6;0.064895!10082-102B1;0.308667!10014-101C5;0.0164781!10070-101I7;0.0427719!10452-106G2;0.0787373!10453-106G3;0.117867!10449-106F8;0.48345!10042-101F6;0.395225!10069-101I6;0.0607367!10193-103E4;0.0151425!10631-108I1;0.0420551!10438-106E6;0.0127993!10488-107B2;0.0364135!10196-103E7;0.0635576!10071-101I8;0.139183!10071-101I8;0.0157945!10041-101F5;0.094646!10451-106G1;0.0954621!10450-106F9;0.241141!10604-108F1;0.426534!10605-108F2;0.0601906!10606-108F3;0.0785777!10603-108E9;0.0431291!10497-107C2;0.013825!10448-106F7;0.00994253!10643-109A4;0.769393!10426-106D3;0.0560293!10431-106D8;0.00973125!10197-103E8;0.0978283!10443-106F2;0.0102608!10815-111B5;0.566115!10816-111B6;0.0160762!10817-111B7;0.0164922!10015-101C6;0.0131885!10410-106B5;0.0221678!10054-101G9;0.0306096!10758-110E2;0.0200278!10711-109H9;0.129006!10040-101F4;0.00582803!10470-106I2;0.0312224!10415-106C1;0.0503506!10198-103E9;0.137318!10614-108G2;0.0199383!10612-108F9;0.0012761!10549-107H9;0.00579263!10615-108G3;0.325665!10487-107B1;0.710849!10433-106E1;0.00455196!10688-109F4;0.0970663!10444-106F3;0.0229853!10444-106F3;0.717472!10485-107A8;0.730434!10413-106B8;0.249696!10175-103C4;0.425965!10161-103A8;0.0808024!12131-128D7;0.150483!10624-108H3;0.0404011!10712-109I1;0.828632!10205-103F7;0.640813!10206-103F8;0.0203769!10207-103F9;0.0205442!10050-101G5;0.576467!10051-101G6;0.0279859!10016-101C7;0.00893592!10046-101G1;0.0129119!10778-110G4;0.0064718!10633-108I3;0.0980437!10818-111B8;0.00213144!10819-111B9;0.0341495!10820-111C1;0.035349!10484-107A7;0.030906!10808-111A7;0.13753!10169-103B7;0.0149086!10153-102I9;0.114632!13425-144D5;0.0844734!13433-144E4;0.379436!13437-144E8;0.312328!11904-125F5;0.441637!11905-125F6;0.00141135!10039-101F3;0.0142096!10791-110H8;0.0248465!10017-101C8;0.147953!10045-101F9;0.494642!10509-107D5;0.168429!10839-111E2;0.0062385!10692-109F8;0.541831!10079-102A7;0.00780853!10078-102A6;0.00822719!10721-110A1;0.020097!10569-108B2;0.0162848!10570-108B3;0.000179044!10571-108B4;0.002608!10647-109A8;0.0022694!10752-110D5;0.1173!10782-110G8;0.0157898!10726-110A6;0.12499!10018-101C9;0.136136!10086-102B5;0.972248!10182-103D2;0.710115!10165-103B3;0.0793628!10499-107C4;0.0719631!10408-106B3;0.0959638!10019-101D1;0.000955336!10068-101I5;0.0634169!10075-102A3;0.11044!10077-102A5;0.0323395!10727-110A7;0.150868!10775-110G1;0.0471035!10412-106B7;0.000659298!12231-129F8;0.0245677!12232-129F9;0.386917!12233-129G1;0.80665!12234-129G2;0.460511!10414-106B9;0.113132!10170-103B8;0.0753063!10183-103D3;0.0924335!10150-102I6;0.0499483!10174-103C3;0.0696868!10155-103A2;0.0487989!10038-101F2;0.0802958!10838-111E1;0.0196662!10759-110E3;0.369336!10514-107E1;0.0194913!10465-106H6;0.125847!10691-109F7;0.350877!10843-111E6;0.966368!10844-111E7;0.249826!11747-123G1;0.846427!11748-123G2;0.564772!11749-123G3;0.266857!11750-123G4;0.125097!11751-123G5;0.0174466!11840-124H4;0.00750899!11752-123G6;0.0047583!11753-123G7;0.0582601!11754-123G8;0.0204516!11755-123G9;0.150861!11756-123H1;0.330856!11833-124G6;0.325878!11760-123H5;0.331686!11836-124G9;0.251925!11758-123H3;0.0784733!11835-124G8;0.0931841!11762-123H7;0.0117607!11838-124H2;0.110675!11757-123H2;0.0270739!11759-123H4;0.273983!11761-123H6;0.107295!11842-124H6;0.0400961!11837-124H1;0.0711823!10568-108B1;0.0110529!13230-141I8;0.747987!13231-141I9;0.14419!10696-109G3;0.0363142!10493-107B7;0.593149!10494-107B8;0.130421!10850-111F4;0.00151677!10851-111F5;0.308517!10852-111F6;0.83318!10853-111F7;0.554994!10854-111F8;0.31719!10855-111F9;0.718889!10856-111G1;0.629194!10847-111F1;0.597575!10846-111E9;0.360182!10848-111F2;0.161458!10845-111E8;0.739897!10857-111G2;0.0340786!10858-111G3;0.409806!10156-103A3;0.451419!11901-125F2;0.0704682!11902-125F3;0.0429517!11903-125F4;0.0506977!10689-109F5;0.061151!10648-109A9;0.599893!10784-110H1;0.484581!10744-110C6;0.00939137!10772-110F7;0.164875!10474-106I6;0.0863338!10600-108E6;0.531896!10684-109E9;0.690783!12226-129F3;0.203158!12227-129F4;0.686176!10508-107D4;0.111217!10539-107G8;0.223914!10607-108F4;0.378096!10555-107I6;0.908844!10774-110F9;0.32533!10637-108I7;0.160845!10663-109C6;0.411039!10728-110A8;0.82297!10729-110A9;0.0356171!10430-106D7;0.167518!10730-110B1;0.00698144!10813-111B3;0.364038!10812-111B2;0.00585574!10037-101F1;0.0157673!10172-103C1;0.0228192!10163-103B1;0.0939734!10076-102A4;0.103324!10073-102A1;0.0340417!10036-101E9;0.122979!10195-103E6;0.0214202!10277-104E7;0.0386923!10434-106E2;0.259731!10550-107I1;0.184517!10545-107H5;0.0756865!10544-107H4;0.0138427!10704-109H2;0.00679209!10510-107D6;0.666806!10558-107I9;0.150982!10020-101D2;0.228579!10732-110B3;0.0895364!10049-101G4;0.413254!10698-109G5;0.597372!10437-106E5;0.0075242!10417-106C3;0.728825!10035-101E8;0.0374991!10171-103B9;0.0290651!10157-103A4;0.0504159!10034-101E7;0.0787862!10072-101I9;0.027354!10199-103F1;0.081769!10200-103F2;0.484638!10697-109G4;0.0286495!10723-110A3;0.781075!10179-103C8;0.354262!10160-103A7;0.24341!10180-103C9;0.415268!10162-103A9;0.449287!10021-101D3;0.41319!10840-111E3;0.00339236!10706-109H4;0.114902!10033-101E6;0.0987929!10032-101E5;0.0296399!10490-107B4;0.0197924!10439-106E7;0.061993!10022-101D4;0.0684532!10176-103C5;0.016865!10469-106I1;0.047953!10067-101I4;0.00715558!10411-106B6;0.0106338!10471-106I3;0.311801!10030-101E3;0.357833!10475-106I7;0.0353284!10787-110H4;0.109927!10477-106I9;0.223541!10695-109G2;0.138173!11771-123I7;0.762474!11772-123I8;0.713739!11773-123I9;0.747593!10093-102C3;0.320619!10442-106F1;0.561757!10442-106F1;0.584247!10201-103F3;0.73083!10639-108I9;0.0233748!11843-124H7;0.0107092!11841-124H5;0.962804!10693-109F9;0.902533!10436-106E4;0.102891!10483-107A6;0.041667!10282-104F3;0.000198139!10023-101D5;0.341459!10066-101I3;0.113045!10065-101I2;0.0237254!10800-110I8;0.00465615!10610-108F7;0.251812!10841-111E4;0.0900279!10541-107H1;0.144889!10842-111E5;0.178913!10562-108A4;0.335395!10024-101D6;0.77274!10064-101I1;0.0434279!10609-108F6;0.0308539!10048-101G3;0.671269!10781-110G7;0.0619492!10181-103D1;0.725616!10159-103A6;0.0563344!10056-101H2;0.188721!10737-110B8;0.0127579!10025-101D7;0.248664!10044-101F8;0.936867!10424-106D1;0.213607!10463-106H4;0.172715!10616-108G4;0.0242202!10486-107A9;0.235523!10062-101H8;0.0182917!10202-103F4;0.284037!10158-103A5;0.156646!10441-106E9;0.196228!10031-101E4;0.547365!10063-101H9;0.0173614!10063-101H9;0.160781!11763-123H8;0.0244301!11765-123I1;0.0250508!11768-123I4;0.0196208!10807-111A6;0.0191428!10790-110H7;0.126861!10798-110I6;0.0854534!10786-110H3;0.1662!10591-108D6;0.192528!10593-108D8;0.12634!10590-108D5;0.0585185!10026-101D8;0.0218478!10096-102C6;0.0371015!10168-103B6;0.975323!10154-103A1;0.0784629!10209-103G2;0.103521!10061-101H7;0.0214024!10027-101D9;0.0115777!10043-101F7;0.110086!10783-110G9;0.863033!10028-101E1;0.308771!10060-101H6;0.538383!10203-103F5;0.07006!10059-101H5;0.0388491!10047-101G2;0.00496415!10029-101E2;0.297439!10058-101H4;0.0709234!10418-106C4;0.00671682!10492-107B6;0.05382!10694-109G1;0.242176!10797-110I5;0.599961!10057-101H3;0.0269845!10100-102D1;0.00193605!10055-101H1;0.0530394!10204-103F6;0.00822629!10191-103E2;0.78217!10563-108A5;0.0661924
|name=5-CGRAWAT,CNhs12703,BestGuess:ERG_f1_HM09(0.699112724441203),T:665.0(32.20%),B:10154.6(21.73%),P:1e-27
|name=5-CGRAWAT,CNhs12703,BestGuess:ERG_f1_HM09(0.699112724441203),T:665.0(32.20%),B:10154.6(21.73%),P:1e-27
|tomtom_result=YRR1#MA0439.1;1;0.000419432;0.19965;0.319068;7;CGAAAAT;GCGGAGATAAG;-!YRM1#MA0438.1;1;0.000683391;0.325294;0.319068;7;CGAAAAT;ACGGAAAT;+!SUT2#MA0400.1;11;0.00100678;0.479229;0.319068;7;CGAAAAT;ATGATAAACTCCGAAAATTT;+!YKL222C#MA0428.1;2;0.00153918;0.732652;0.365846;7;CGAAAAT;AACGGAAAT;+!YDR520C#MA0422.1;1;0.00411123;1.95694;0.689477;7;CGAAAAT;CCGGAGATAA;+!ASG1#MA0275.1;1;0.00435114;2.07114;0.689477;5;CGAAAAT;CCGGAA;+!ETS1#MA0098.1;0;0.00664722;3.16408;0.737907;6;CGAAAAT;CGGAAA;-!HAP1#MA0312.1;0;0.00682332;3.2479;0.737907;7;CGAAAAT;CGGAGATA;+!RGT1#MA0367.1;1;0.00698516;3.32494;0.737907;7;CGAAAAT;CCGGAAAAACT;-!YJL103C#MA0427.1;4;0.00936616;4.45829;0.864961;7;CGAAAAT;TCTCCGGAGCT;-!OAF1#MA0348.1;1;0.010719;5.10224;0.864961;7;CGAAAAT;TCGGAGATA;+!CEP3#MA0282.1;2;0.0136431;6.49409;0.864961;6;CGAAAAT;CTCGGAAA;+!LYS14#MA0325.1;1;0.0136431;6.49409;0.864961;7;CGAAAAT;CCGGAATT;+!YNR063W#MA0432.1;1;0.0136431;6.49409;0.864961;7;CGAAAAT;TCGGAGAT;+!CAT8#MA0280.1;1;0.0145059;6.90482;0.864961;5;CGAAAAT;CCGGAA;+!STB5#MA0392.1;0;0.0156043;7.42764;0.864961;7;CGAAAAT;CGGTGTTA;+!CUP2#MA0287.1;3;0.0163372;7.7765;0.864961;7;CGAAAAT;CAGCAAAAATG;+!YPR196W#MA0437.1;0;0.0171915;8.18314;0.864961;7;CGAAAAT;CGGAGAAAT;-!ARO80#MA0273.1;10;0.0178322;8.48811;0.864961;7;CGAAAAT;ACATACTTGCCGAGAATTATC;-!HAL9#MA0311.1;0;0.0199907;9.51559;0.864961;5;CGAAAAT;CGGAA;+!PDR8#MA0354.1;1;0.0203191;9.67187;0.864961;7;CGAAAAT;GCGGAGAT;+!ELK4#MA0076.1;2;0.0209245;9.96008;0.864961;7;CGAAAAT;ACCGGAAGT;+!DAL82#MA0291.1;1;0.0209245;9.96008;0.864961;7;CGAAAAT;GCGCACATT;-
}}
}}

Latest revision as of 14:27, 7 September 2012

Full Name: 5-CGRAWAT,CNhs12703,BestGuess:ERG_f1_HM09(0.699112724441203),T:665.0(32.20%),B:10154.6(21.73%),P:1e-27

Motif matrix
POACGT
119.285644.3850.6650.665
20.66561.845588.52513.965
3303.2457.855259.3545.22
4361.7652.535182.87567.83
5327.180.66537.905298.585
6349.125133.039.235143.64
7107.0650.66592.435464.835

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YRR1#MA0439.110.0004194320.199650.3190687CGAAAATGCGGAGATAAG-
YRM1#MA0438.110.0006833910.3252940.3190687CGAAAATACGGAAAT+
SUT2#MA0400.1110.001006780.4792290.3190687CGAAAATATGATAAACTCCGAAAATTT+
YKL222C#MA0428.120.001539180.7326520.3658467CGAAAATAACGGAAAT+
YDR520C#MA0422.110.004111231.956940.6894777CGAAAATCCGGAGATAA+
ASG1#MA0275.110.004351142.071140.6894775CGAAAATCCGGAA+
ETS1#MA0098.100.006647223.164080.7379076CGAAAATCGGAAA-
HAP1#MA0312.100.006823323.24790.7379077CGAAAATCGGAGATA+
RGT1#MA0367.110.006985163.324940.7379077CGAAAATCCGGAAAAACT-
YJL103C#MA0427.140.009366164.458290.8649617CGAAAATTCTCCGGAGCT-
OAF1#MA0348.110.0107195.102240.8649617CGAAAATTCGGAGATA+
CEP3#MA0282.120.01364316.494090.8649616CGAAAATCTCGGAAA+
LYS14#MA0325.110.01364316.494090.8649617CGAAAATCCGGAATT+
YNR063W#MA0432.110.01364316.494090.8649617CGAAAATTCGGAGAT+
CAT8#MA0280.110.01450596.904820.8649615CGAAAATCCGGAA+
STB5#MA0392.100.01560437.427640.8649617CGAAAATCGGTGTTA+
CUP2#MA0287.130.01633727.77650.8649617CGAAAATCAGCAAAAATG+
YPR196W#MA0437.100.01719158.183140.8649617CGAAAATCGGAGAAAT-
ARO80#MA0273.1100.01783228.488110.8649617CGAAAATACATACTTGCCGAGAATTATC-
HAL9#MA0311.100.01999079.515590.8649615CGAAAATCGGAA+
PDR8#MA0354.110.02031919.671870.8649617CGAAAATGCGGAGAT+
ELK4#MA0076.120.02092459.960080.8649617CGAAAATACCGGAAGT+
DAL82#MA0291.110.02092459.960080.8649617CGAAAATGCGCACATT-
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