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MacroAPE 1083:14-CACTTCCGTAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.918;258.264;0.612;46.206!2;216.036;0.612;0.918;88.434!3;1.836;200.43;69.156;34.578!4;39.78;49.572;0.612;216.036!5;40.392;49.878;46.512;169...")
 
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19H8;0.0788817!11600-120H7;0.35163!11681-122H7;0.894656!11216-116B1;0.083373!12179-129A1;0.573642!12180-129A2;0.0011923!12181-129A3;0.000221017!12176-128I7;0.00977673!12177-128I8;0.000947593!12182-129A4;0.000571723!12183-129A5;0.000276942!12184-129A6;0.000918255!10809-111A8;0.00304664!10597-108E3;0.662295!10717-109I6;0.803248!10455-106G5;0.315761!10534-107G3;0.10115!10429-106D6;0.35244!10464-106H5;0.513232!10827-111C8;0.0414597!10789-110H6;0.145096!10828-111C9;0.0827608!10788-110H5;0.318578!10792-110H9;0.287712!10765-110E9;0.0639642!10829-111D1;0.00735961!10830-111D2;0.00169031!10831-111D3;0.0592721!10832-111D4;0.152219!10833-111D5;0.014971!10764-110E8;0.0106023!10770-110F5;0.0167184!10399-106A3;0.127259!10400-106A4;0.00807378!10405-106A9;0.00521713!10834-111D6;0.0050985!10835-111D7;0.00495273!10836-111D8;0.31193!10837-111D9;0.0656071!10699-109G6;0.135294!10802-111A1;0.0586185!10796-110I4;0.0177604!10010-101C1;0.780058!10810-111A9;0.172024!10421-106C7;0.738999!10708-109H6;0.0502485!12235-129G3;0.886788!12236-129G4;0.910757!12237-129G5;0.28075!10167-103B5;0.730566!10151-102I7;0.510126!10428-106D5;0.498837!10795-110I3;0.84138!10805-111A4;0.143416!10052-101G7;0.445036!10189-103D9;0.0563498!10589-108D4;0.249193!10425-106D2;0.92173!10427-106D4;0.608086!10702-109G9;0.00487472!10432-106D9;0.352646!10496-107C1;0.362922!10718-109I7;0.0906978!10011-101C2;0.0235812!10053-101G8;0.105345!10686-109F2;0.0100293!10084-102B3;0.673625!10012-101C3;0.0919133!10085-102B4;0.246633!10482-107A5;0.0488823!10419-106C5;0.61834!10080-102A8;0.358451!10760-110E4;0.0265053!10709-109H7;0.60456!10710-109H8;0.529853!10703-109H1;0.651267!10719-109I8;0.332507!10642-109A3;0.251547!10177-103C6;0.187303!10164-103B2;0.328629!10173-103C2;0.355085!10166-103B4;0.323569!10083-102B2;0.306762!10188-103D8;0.107181!10552-107I3;0.308136!10553-107I4;0.601133!10013-101C4;0.943517!10536-107G5;0.0301635!10618-108G6;0.312101!10423-106C9;0.250772!10785-110H2;0.588807!12238-129G6;0.968272!12239-129G7;0.884415!12240-129G8;0.446485!10416-106C2;0.404004!10801-110I9;0.184536!10766-110F1;0.214152!10824-111C5;0.0197071!10825-111C6;0.194655!10826-111C7;0.265707!10454-106G4;0.214048!10409-106B4;0.25619!10638-108I8;0.0363885!10636-108I6;0.994999!10513-107D9;0.194703!10420-106C6;0.482825!10082-102B1;0.627549!10014-101C5;0.000363761!10070-101I7;0.0276941!10452-106G2;0.00228672!10453-106G3;0.116877!10449-106F8;0.215251!10042-101F6;0.268823!10069-101I6;0.268257!10193-103E4;0.00303423!10631-108I1;0.413058!10438-106E6;0.0658886!10488-107B2;0.375215!10196-103E7;0.628221!10071-101I8;0.0254558!10071-101I8;0.00264356!10041-101F5;0.304169!10451-106G1;0.655555!10450-106F9;0.987152!10604-108F1;0.654121!10605-108F2;0.897019!10606-108F3;0.677143!10603-108E9;0.510118!10497-107C2;0.741753!10448-106F7;0.673872!10643-109A4;0.951912!10426-106D3;0.798674!10431-106D8;0.220367!10197-103E8;0.425912!10443-106F2;0.0137268!10815-111B5;0.78179!10816-111B6;0.806171!10817-111B7;0.6389!10015-101C6;0.809528!10410-106B5;0.0167069!10054-101G9;0.89381!10758-110E2;0.0035352!10711-109H9;0.00475802!10040-101F4;0.080915!10470-106I2;0.33814!10415-106C1;0.309295!10198-103E9;0.179348!10614-108G2;0.0816499!10612-108F9;0.822343!10549-107H9;0.691537!10615-108G3;0.7911!10487-107B1;0.846113!10433-106E1;0.346948!10688-109F4;0.918166!10444-106F3;0.6916!10444-106F3;0.814099!10485-107A8;0.778324!10413-106B8;0.681752!10175-103C4;0.971618!10161-103A8;0.174889!12131-128D7;0.533115!10624-108H3;0.0495948!10712-109I1;0.22854!10205-103F7;0.0997243!10206-103F8;0.0136181!10207-103F9;0.023902!10050-101G5;0.103849!10051-101G6;0.000560435!10016-101C7;0.00462522!10046-101G1;0.0216399!10778-110G4;0.0192482!10633-108I3;0.551091!10818-111B8;0.280664!10819-111B9;0.735853!10820-111C1;0.865166!10484-107A7;0.787393!10808-111A7;0.485972!10169-103B7;0.0529299!10153-102I9;0.442129!13425-144D5;0.375657!13433-144E4;0.0399079!13437-144E8;0.040208!11904-125F5;0.0301969!11905-125F6;0.00345488!10039-101F3;0.0690089!10791-110H8;0.311829!10017-101C8;0.957574!10045-101F9;0.0625685!10509-107D5;0.00276678!10839-111E2;0.59109!10692-109F8;0.661944!10079-102A7;0.970599!10078-102A6;0.00133288!10721-110A1;0.00651351!10569-108B2;0.974615!10570-108B3;0.649471!10571-108B4;0.916319!10647-109A8;0.488172!10752-110D5;0.757398!10782-110G8;0.0014141!10726-110A6;0.0574392!10018-101C9;0.187949!10086-102B5;0.73419!10182-103D2;0.0425886!10165-103B3;0.165885!10499-107C4;0.350659!10408-106B3;0.987832!10019-101D1;0.812288!10068-101I5;0.0953441!10075-102A3;0.0289549!10077-102A5;0.00708352!10727-110A7;0.162445!10775-110G1;0.118893!10412-106B7;0.0355499!12231-129F8;0.0115278!12232-129F9;0.26845!12233-129G1;0.245025!12234-129G2;0.386316!10414-106B9;0.360789!10170-103B8;0.934843!10183-103D3;0.406643!10150-102I6;0.347809!10174-103C3;0.373084!10155-103A2;0.054738!10038-101F2;0.233392!10838-111E1;0.1198!10759-110E3;0.166768!10514-107E1;0.986598!10465-106H6;0.183452!10691-109F7;0.188118!10843-111E6;0.28088!10844-111E7;0.87445!11747-123G1;0.639235!11748-123G2;0.455625!11749-123G3;0.20686!11750-123G4;0.122591!11751-123G5;0.540266!11840-124H4;0.159233!11752-123G6;0.0764681!11753-123G7;0.834873!11754-123G8;0.443863!11755-123G9;0.552241!11756-123H1;0.615263!11833-124G6;0.663791!11760-123H5;0.828129!11836-124G9;0.868839!11758-123H3;0.327108!11835-124G8;0.595751!11762-123H7;0.374278!11838-124H2;0.796295!11757-123H2;0.692404!11759-123H4;0.884934!11761-123H6;0.84253!11842-124H6;0.865202!11837-124H1;0.334542!10568-108B1;0.369446!13230-141I8;0.00704248!13231-141I9;0.141152!10696-109G3;0.137878!10493-107B7;0.880122!10494-107B8;0.418365!10850-111F4;0.642297!10851-111F5;0.971537!10852-111F6;0.612464!10853-111F7;0.149691!10854-111F8;0.725335!10855-111F9;0.470508!10856-111G1;0.0341771!10847-111F1;0.890818!10846-111E9;0.706603!10848-111F2;0.244072!10845-111E8;0.797661!10857-111G2;0.913179!10858-111G3;0.680042!10156-103A3;0.813916!11901-125F2;0.384701!11902-125F3;0.000473483!11903-125F4;7.23195e-05!10689-109F5;1.29113e-05!10648-109A9;0.953425!10784-110H1;0.967759!10744-110C6;0.218673!10772-110F7;0.0257884!10474-106I6;0.0500638!10600-108E6;0.0359117!10684-109E9;0.691164!12226-129F3;0.505994!12227-129F4;0.522039!10508-107D4;0.846976!10539-107G8;0.712292!10607-108F4;0.786786!10555-107I6;0.497638!10774-110F9;0.651989!10637-108I7;0.346481!10663-109C6;0.987408!10728-110A8;0.844411!10729-110A9;0.91601!10430-106D7;0.120292!10730-110B1;0.267668!10813-111B3;0.17399!10812-111B2;0.00105125!10037-101F1;0.0419153!10172-103C1;0.302135!10163-103B1;0.440874!10076-102A4;0.406235!10073-102A1;0.171531!10036-101E9;0.229275!10195-103E6;0.151702!10277-104E7;0.191808!10434-106E2;0.589602!10550-107I1;0.0770078!10545-107H5;0.884513!10544-107H4;0.106848!10704-109H2;0.189097!10510-107D6;0.926415!10558-107I9;0.154942!10020-101D2;0.0219917!10732-110B3;0.0532128!10049-101G4;0.798203!10698-109G5;0.00434214!10437-106E5;0.293641!10417-106C3;0.970711!10035-101E8;0.670411!10171-103B9;0.283358!10157-103A4;0.451661!10034-101E7;0.376364!10072-101I9;0.269483!10199-103F1;0.184236!10200-103F2;0.0153037!10697-109G4;0.0269798!10723-110A3;0.303876!10179-103C8;0.752887!10160-103A7;0.613297!10180-103C9;0.534037!10162-103A9;0.818893!10021-101D3;0.77506!10840-111E3;0.87073!10706-109H4;0.0840681!10033-101E6;0.645149!10032-101E5;0.263118!10490-107B4;0.222205!10439-106E7;0.685223!10022-101D4;0.289607!10176-103C5;0.09621!10469-106I1;0.383187!10067-101I4;0.666428!10411-106B6;0.00708785!10471-106I3;0.860703!10030-101E3;0.66569!10475-106I7;0.0416218!10787-110H4;0.38572!10477-106I9;0.858877!10695-109G2;0.396324!11771-123I7;0.19822!11772-123I8;0.456631!11773-123I9;0.118703!10093-102C3;0.484822!10442-106F1;0.0383663!10442-106F1;0.00398476!10201-103F3;0.00592592!10639-108I9;0.043312!11843-124H7;0.274323!11841-124H5;0.907246!10693-109F9;0.456985!10436-106E4;0.364875!10483-107A6;0.820492!10282-104F3;0.42605!10023-101D5;0.302591!10066-101I3;0.012991!10065-101I2;0.00223128!10800-110I8;0.00141393!10610-108F7;0.712507!10841-111E4;0.447827!10541-107H1;0.207308!10842-111E5;0.36466!10562-108A4;0.382102!10024-101D6;0.835786!10064-101I1;0.480045!10609-108F6;0.0119526!10048-101G3;0.184339!10781-110G7;0.155295!10181-103D1;0.987259!10159-103A6;0.130762!10056-101H2;0.71!10737-110B8;0.00330109!10025-101D7;0.235635!10044-101F8;0.435004!10424-106D1;0.480599!10463-106H4;0.0036123!10616-108G4;0.122586!10486-107A9;0.000114934!10062-101H8;0.128987!10202-103F4;0.137869!10158-103A5;0.00695028!10441-106E9;0.546401!10031-101E4;0.684757!10063-101H9;0.146278!10063-101H9;0.235688!11763-123H8;0.00609046!11765-123I1;0.00659164!11768-123I4;0.0259021!10807-111A6;0.0128665!10790-110H7;0.446282!10798-110I6;0.910264!10786-110H3;0.071508!10591-108D6;0.514717!10593-108D8;0.576486!10590-108D5;0.572059!10026-101D8;0.973433!10096-102C6;0.0194918!10168-103B6;0.0469922!10154-103A1;0.215029!10209-103G2;0.473603!10061-101H7;0.00121652!10027-101D9;0.000240039!10043-101F7;0.282613!10783-110G9;0.973991!10028-101E1;0.388959!10060-101H6;0.0295758!10203-103F5;0.000854638!10059-101H5;0.00541209!10047-101G2;0.000471398!10029-101E2;0.115085!10058-101H4;0.0470959!10418-106C4;0.00336191!10492-107B6;0.569601!10694-109G1;0.705529!10797-110I5;0.195193!10057-101H3;0.92521!10100-102D1;0.00408048!10055-101H1;0.115009!10204-103F6;0.00335345!10191-103E2;0.114475!10563-108A5;0.0884708
|name=14-CACTTCCGTAA,CNhs13465,BestGuess:SPI1.p2.SwissRegulon.nucfreq(0.688199677424306),T:306.0(4.40%),B:869.7(2.07%),P:1e-32
|name=14-CACTTCCGTAA,CNhs13465,BestGuess:SPI1.p2.SwissRegulon.nucfreq(0.688199677424306),T:306.0(4.40%),B:869.7(2.07%),P:1e-32
|tomtom_result=ELF5#MA0136.1;0;0.0010316;0.491043;0.422182;9;CACTTCCGTAA;TACTTCCTT;+!YAP6#MA0418.1;2;0.00145595;0.693032;0.422182;11;CACTTCCGTAA;GTCGCTTACGTAATCAGACC;-!SPI1#MA0080.2;-2;0.00158268;0.753358;0.422182;6;CACTTCCGTAA;CTTCCG;-!YGR067C#MA0425.1;4;0.00177432;0.844578;0.422182;10;CACTTCCGTAA;ACCCCACTTTTTTG;+!GABPA#MA0062.2;2;0.00412099;1.96159;0.784438;9;CACTTCCGTAA;GCCACTTCCGG;-!SPI1#MA0080.2;-1;0.00612836;2.9171;0.905094;7;CACTTCCGTAA;ACTTCCT;-!Tal1::Gata1#MA0140.1;5;0.00800974;3.81263;0.905094;11;CACTTCCGTAA;CTTATCTGTCCCCACCAG;-!FOXC1#MA0032.1;0;0.00947914;4.51207;0.905094;8;CACTTCCGTAA;TACTTACC;-!Nkx3-2#MA0122.1;2;0.00949207;4.51823;0.905094;7;CACTTCCGTAA;TCCACTTAA;-!GABPA#MA0062.2;0;0.0095097;4.52662;0.905094;10;CACTTCCGTAA;CTCTTCCGGT;-!tin#MA0247.1;0;0.0112305;5.34573;0.971704;8;CACTTCCGTAA;CACTTGAG;-!ETS1#MA0098.1;-2;0.0136448;6.49493;0.999747;6;CACTTCCGTAA;CTTCCG;+!YRM1#MA0438.1;-1;0.0147811;7.03579;0.999747;8;CACTTCCGTAA;ATTTCCGT;-!CEBPA#MA0102.2;-2;0.0167494;7.97272;0.999747;9;CACTTCCGTAA;ATTGCGAAA;-!HLF#MA0043.1;-1;0.017297;8.23337;0.999747;10;CACTTCCGTAA;TATTACGTAACC;-!CIN5#MA0284.1;-1;0.0185002;8.80609;0.999747;10;CACTTCCGTAA;GATTACGTAA;-!Eip74EF#MA0026.1;-2;0.0207247;9.86495;0.999747;7;CACTTCCGTAA;CTTCCGG;-
}}
}}

Latest revision as of 14:21, 7 September 2012

Full Name: 14-CACTTCCGTAA,CNhs13465,BestGuess:SPI1.p2.SwissRegulon.nucfreq(0.688199677424306),T:306.0(4.40%),B:869.7(2.07%),P:1e-32

Motif matrix
POACGT
10.918258.2640.61246.206
2216.0360.6120.91888.434
31.836200.4369.15634.578
439.7849.5720.612216.036
540.39249.87846.512169.218
667.626151.16457.52829.682
726.622172.58435.49671.298
840.69860.894147.79856.916
956.6144.3751.408153.612
10186.96681.39625.09212.546
11200.7361.83626.31677.112

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ELF5#MA0136.100.00103160.4910430.4221829CACTTCCGTAATACTTCCTT+
YAP6#MA0418.120.001455950.6930320.42218211CACTTCCGTAAGTCGCTTACGTAATCAGACC-
SPI1#MA0080.2-20.001582680.7533580.4221826CACTTCCGTAACTTCCG-
YGR067C#MA0425.140.001774320.8445780.42218210CACTTCCGTAAACCCCACTTTTTTG+
GABPA#MA0062.220.004120991.961590.7844389CACTTCCGTAAGCCACTTCCGG-
SPI1#MA0080.2-10.006128362.91710.9050947CACTTCCGTAAACTTCCT-
Tal1::Gata1#MA0140.150.008009743.812630.90509411CACTTCCGTAACTTATCTGTCCCCACCAG-
FOXC1#MA0032.100.009479144.512070.9050948CACTTCCGTAATACTTACC-
Nkx3-2#MA0122.120.009492074.518230.9050947CACTTCCGTAATCCACTTAA-
GABPA#MA0062.200.00950974.526620.90509410CACTTCCGTAACTCTTCCGGT-
tin#MA0247.100.01123055.345730.9717048CACTTCCGTAACACTTGAG-
ETS1#MA0098.1-20.01364486.494930.9997476CACTTCCGTAACTTCCG+
YRM1#MA0438.1-10.01478117.035790.9997478CACTTCCGTAAATTTCCGT-
CEBPA#MA0102.2-20.01674947.972720.9997479CACTTCCGTAAATTGCGAAA-
HLF#MA0043.1-10.0172978.233370.99974710CACTTCCGTAATATTACGTAACC-
CIN5#MA0284.1-10.01850028.806090.99974710CACTTCCGTAAGATTACGTAA-
Eip74EF#MA0026.1-20.02072479.864950.9997477CACTTCCGTAACTTCCGG-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:14-CACTTCCGTAA&oldid=2134333"