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MacroAPE 1083:1-TWTTWVNSCS: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.376;0.376;41.736;333.512!2;181.984;0.376;0.376;193.264!3;0.376;0.376;0.376;374.872!4;127.088;0.376;0.376;248.16!5;136.864;83.848;0.376;155...")
 
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10429-106D6;0.299848!10464-106H5;0.823948!10827-111C8;0.656088!10789-110H6;0.519322!10828-111C9;0.0348812!10788-110H5;0.613734!10792-110H9;0.176748!10765-110E9;0.833762!10829-111D1;0.332718!10830-111D2;0.344221!10831-111D3;0.619042!10832-111D4;0.0942864!10833-111D5;0.968385!10764-110E8;0.545302!10770-110F5;0.333103!10399-106A3;0.912295!10400-106A4;0.788265!10405-106A9;0.808083!10834-111D6;0.969501!10835-111D7;0.559678!10836-111D8;0.131578!10837-111D9;0.187698!10699-109G6;0.246539!10802-111A1;0.564133!10796-110I4;0.629146!10010-101C1;0.316722!10810-111A9;0.872474!10421-106C7;0.564347!10708-109H6;0.235946!12235-129G3;0.0768214!12236-129G4;0.287285!12237-129G5;0.56631!10167-103B5;0.609235!10151-102I7;0.0740812!10428-106D5;0.0351987!10795-110I3;0.101481!10805-111A4;0.286816!10052-101G7;0.893155!10189-103D9;0.692385!10589-108D4;0.341561!10425-106D2;0.936958!10427-106D4;0.74937!10702-109G9;0.684245!10432-106D9;0.835494!10496-107C1;0.281994!10718-109I7;0.572592!10011-101C2;0.485271!10053-101G8;0.870938!10686-109F2;0.583522!10084-102B3;0.762651!10012-101C3;0.139637!10085-102B4;0.0930952!10482-107A5;0.500846!10419-106C5;0.526274!10080-102A8;0.846951!10760-110E4;0.313496!10709-109H7;0.588633!10710-109H8;0.0604!10703-109H1;0.117465!10719-109I8;0.789985!10642-109A3;0.612058!10177-103C6;0.434388!10164-103B2;0.0383447!10173-103C2;0.0229908!10166-103B4;0.136518!10083-102B2;0.100887!10188-103D8;0.198082!10552-107I3;0.15042!10553-107I4;0.161062!10013-101C4;0.121946!10536-107G5;0.853233!10618-108G6;0.960421!10423-106C9;0.626963!10785-110H2;0.529171!12238-129G6;0.462069!12239-129G7;0.341483!12240-129G8;0.447487!10416-106C2;0.75561!10801-110I9;0.578636!10766-110F1;0.192893!10824-111C5;0.44679!10825-111C6;0.0467403!10826-111C7;0.0330039!10454-106G4;0.033081!10409-106B4;0.0824522!10638-108I8;0.0324619!10636-108I6;0.134444!10513-107D9;0.288239!10420-106C6;0.396669!10082-102B1;0.913368!10014-101C5;0.0304186!10070-101I7;0.502799!10452-106G2;0.106347!10453-106G3;0.668776!10449-106F8;0.852978!10042-101F6;0.975324!10069-101I6;0.108508!10193-103E4;0.0722421!10631-108I1;0.0933485!10438-106E6;0.360404!10488-107B2;0.654528!10196-103E7;0.130434!10071-101I8;0.537086!10071-101I8;0.233468!10041-101F5;0.29501!10451-106G1;0.602258!10450-106F9;0.0863287!10604-108F1;0.216404!10605-108F2;0.607489!10606-108F3;0.696759!10603-108E9;0.729192!10497-107C2;0.972543!10448-106F7;0.619485!10643-109A4;0.876537!10426-106D3;0.595764!10431-106D8;0.0855548!10197-103E8;0.0868565!10443-106F2;0.639015!10815-111B5;0.111493!10816-111B6;0.0849333!10817-111B7;0.0929394!10015-101C6;0.0849754!10410-106B5;0.33542!10054-101G9;0.497611!10758-110E2;0.63846!10711-109H9;0.419092!10040-101F4;0.0429522!10470-106I2;0.0668903!10415-106C1;0.0799282!10198-103E9;0.749759!10614-108G2;0.335783!10612-108F9;0.516546!10549-107H9;0.574899!10615-108G3;0.85617!10487-107B1;0.874895!10433-106E1;0.454506!10688-109F4;0.534014!10444-106F3;0.058008!10444-106F3;0.538345!10485-107A8;0.756206!10413-106B8;0.442985!10175-103C4;0.920233!10161-103A8;0.105541!12131-128D7;0.0292049!10624-108H3;0.581713!10712-109I1;0.61457!10205-103F7;0.725972!10206-103F8;0.0767458!10207-103F9;0.275422!10050-101G5;0.176633!10051-101G6;4.44516e-05!10016-101C7;0.0480906!10046-101G1;0.0169372!10778-110G4;0.0221711!10633-108I3;0.671765!10818-111B8;0.804858!10819-111B9;0.510813!10820-111C1;0.46625!10484-107A7;0.554913!10808-111A7;0.609122!10169-103B7;0.896805!10153-102I9;0.0666341!13425-144D5;0.0357252!13433-144E4;0.916457!13437-144E8;0.850704!11904-125F5;0.769579!11905-125F6;0.449793!10039-101F3;0.914977!10791-110H8;0.0604889!10017-101C8;0.214935!10045-101F9;0.280734!10509-107D5;0.564821!10839-111E2;0.0567603!10692-109F8;0.164214!10079-102A7;0.235702!10078-102A6;0.0100324!10721-110A1;0.00347153!10569-108B2;0.244781!10570-108B3;0.292244!10571-108B4;0.457341!10647-109A8;0.494167!10752-110D5;0.709696!10782-110G8;0.0253051!10726-110A6;0.910132!10018-101C9;0.197716!10086-102B5;0.579085!10182-103D2;0.0122408!10165-103B3;0.200942!10499-107C4;0.046481!10408-106B3;0.380671!10019-101D1;0.518423!10068-101I5;0.312984!10075-102A3;0.455441!10077-102A5;0.487541!10727-110A7;0.791785!10775-110G1;0.432349!10412-106B7;0.902694!12231-129F8;0.552983!12232-129F9;0.0557851!12233-129G1;0.29381!12234-129G2;0.30223!10414-106B9;0.357691!10170-103B8;0.822175!10183-103D3;0.0515038!10150-102I6;0.0731494!10174-103C3;0.0470192!10155-103A2;0.174232!10038-101F2;0.0784042!10838-111E1;0.15986!10759-110E3;0.516726!10514-107E1;0.0270995!10465-106H6;0.385577!10691-109F7;0.282097!10843-111E6;0.483818!10844-111E7;0.0393337!11747-123G1;0.378941!11748-123G2;0.152925!11749-123G3;0.834781!11750-123G4;0.828099!11751-123G5;0.260206!11840-124H4;0.080258!11752-123G6;0.222861!11753-123G7;0.222269!11754-123G8;0.727839!11755-123G9;0.16293!11756-123H1;0.246048!11833-124G6;0.460073!11760-123H5;0.304512!11836-124G9;0.443246!11758-123H3;0.652042!11835-124G8;0.339527!11762-123H7;0.535768!11838-124H2;0.962871!11757-123H2;0.975522!11759-123H4;0.494855!11761-123H6;0.861746!11842-124H6;0.38464!11837-124H1;0.593911!10568-108B1;0.740211!13230-141I8;0.0446313!13231-141I9;0.550958!10696-109G3;0.535628!10493-107B7;0.338644!10494-107B8;0.828618!10850-111F4;0.279269!10851-111F5;0.464804!10852-111F6;0.564301!10853-111F7;0.0512562!10854-111F8;0.748481!10855-111F9;0.40201!10856-111G1;0.351718!10847-111F1;0.156521!10846-111E9;0.0695109!10848-111F2;0.15151!10845-111E8;0.896266!10857-111G2;0.462137!10858-111G3;0.606765!10156-103A3;0.116171!11901-125F2;0.0406077!11902-125F3;0.0737637!11903-125F4;0.0549482!10689-109F5;0.00884278!10648-109A9;0.987836!10784-110H1;0.0911373!10744-110C6;0.0564884!10772-110F7;0.389736!10474-106I6;0.357227!10600-108E6;0.231763!10684-109E9;0.145342!12226-129F3;0.498988!12227-129F4;0.828982!10508-107D4;0.270761!10539-107G8;0.718076!10607-108F4;0.120157!10555-107I6;0.726359!10774-110F9;0.0803799!10637-108I7;0.955502!10663-109C6;0.794782!10728-110A8;0.517071!10729-110A9;0.747186!10430-106D7;0.137777!10730-110B1;0.0754577!10813-111B3;0.456974!10812-111B2;0.603875!10037-101F1;0.561834!10172-103C1;0.0625754!10163-103B1;0.112644!10076-102A4;0.0414973!10073-102A1;0.107467!10036-101E9;0.351853!10195-103E6;0.0909418!10277-104E7;0.071897!10434-106E2;0.278899!10550-107I1;0.864138!10545-107H5;0.42844!10544-107H4;0.709428!10704-109H2;0.265932!10510-107D6;0.511523!10558-107I9;0.310085!10020-101D2;0.180863!10732-110B3;0.640533!10049-101G4;0.153487!10698-109G5;0.834671!10437-106E5;0.790577!10417-106C3;0.288642!10035-101E8;0.00810494!10171-103B9;0.0696065!10157-103A4;0.0704278!10034-101E7;0.0446337!10072-101I9;0.0591757!10199-103F1;0.43827!10200-103F2;0.652182!10697-109G4;0.578991!10723-110A3;0.763012!10179-103C8;0.806935!10160-103A7;0.168755!10180-103C9;0.0539641!10162-103A9;0.0225018!10021-101D3;0.0215053!10840-111E3;0.916443!10706-109H4;0.706758!10033-101E6;0.0548023!10032-101E5;0.0813447!10490-107B4;0.080451!10439-106E7;0.102746!10022-101D4;0.179822!10176-103C5;0.607007!10469-106I1;0.0375401!10067-101I4;0.945949!10411-106B6;0.185703!10471-106I3;0.315043!10030-101E3;0.580789!10475-106I7;0.442056!10787-110H4;0.553662!10477-106I9;0.0101783!10695-109G2;0.414676!11771-123I7;0.418509!11772-123I8;0.216735!11773-123I9;0.482598!10093-102C3;0.132655!10442-106F1;0.492024!10442-106F1;0.220157!10201-103F3;0.178018!10639-108I9;0.307378!11843-124H7;0.345345!11841-124H5;0.530886!10693-109F9;0.0675764!10436-106E4;0.919773!10483-107A6;0.58924!10282-104F3;0.0884854!10023-101D5;0.574484!10066-101I3;0.280489!10065-101I2;0.00512378!10800-110I8;0.22281!10610-108F7;0.742018!10841-111E4;0.890867!10541-107H1;0.187554!10842-111E5;0.654359!10562-108A4;0.273091!10024-101D6;0.972498!10064-101I1;0.999452!10609-108F6;0.205586!10048-101G3;0.975071!10781-110G7;0.701763!10181-103D1;0.26034!10159-103A6;0.194909!10056-101H2;0.0507185!10737-110B8;0.530457!10025-101D7;0.00481356!10044-101F8;0.822117!10424-106D1;0.711604!10463-106H4;0.167104!10616-108G4;0.515981!10486-107A9;0.540129!10062-101H8;0.570571!10202-103F4;0.00299189!10158-103A5;0.643198!10441-106E9;0.0211219!10031-101E4;0.749185!10063-101H9;0.0967866!10063-101H9;0.360855!11763-123H8;0.870902!11765-123I1;0.556929!11768-123I4;0.928933!10807-111A6;0.15244!10790-110H7;0.810802!10798-110I6;0.512394!10786-110H3;0.548401!10591-108D6;0.796671!10593-108D8;0.43626!10590-108D5;0.885009!10026-101D8;0.703759!10096-102C6;0.902798!10168-103B6;0.216819!10154-103A1;0.0837507!10209-103G2;0.0326545!10061-101H7;0.0857949!10027-101D9;0.00803526!10043-101F7;0.252785!10783-110G9;0.421424!10028-101E1;0.0853576!10060-101H6;0.666619!10203-103F5;0.0269332!10059-101H5;0.0202711!10047-101G2;0.00369019!10029-101E2;0.158176!10058-101H4;0.810269!10418-106C4;0.0819374!10492-107B6;0.197445!10694-109G1;0.211527!10797-110I5;0.515674!10057-101H3;0.360313!10100-102D1;0.000639522!10055-101H1;0.564531!10204-103F6;0.139677!10191-103E2;0.480379!10563-108A5;0.129733
|name=1-TWTTWVNSCS,CNhs11086,BestGuess:HMGA1_f1_HM09(0.621491710547325),T:376.0(31.95%),B:8855.4(18.54%),P:1e-27
|name=1-TWTTWVNSCS,CNhs11086,BestGuess:HMGA1_f1_HM09(0.621491710547325),T:376.0(31.95%),B:8855.4(18.54%),P:1e-27
|tomtom_result=hb#MA0049.1;1;0.000550367;0.261975;0.52395;9;TTTTTACCCC;TTTTTTATGC;-!YPR196W#MA0437.1;-1;0.00143893;0.684929;0.684929;9;TTTTTACCCC;ATTTCTCCG;+!STB5#MA0392.1;-2;0.00562636;2.67815;1;8;TTTTTACCCC;TAACACCG;-!RGT1#MA0367.1;0;0.00960615;4.57253;1;10;TTTTTACCCC;AATTTTTCCGG;+!SFP1#MA0378.1;12;0.0108684;5.17338;1;9;TTTTTACCCC;CCGTAGAAAATTTTTTTCAAT;-!TBP#MA0108.2;1;0.0139725;6.65093;1;10;TTTTTACCCC;GTATAAAAGGCGGGG;+!TBP#MA0108.2;1;0.0139725;6.65093;1;10;TTTTTACCCC;GTATAAAAGGCGGGG;+!YDR520C#MA0422.1;-1;0.015084;7.17999;1;9;TTTTTACCCC;TTATCTCCGG;-!SMP1#MA0383.1;11;0.0153171;7.29096;1;10;TTTTTACCCC;TTACCTATAATTAAATTAGCA;+!YRR1#MA0439.1;0;0.017789;8.46754;1;10;TTTTTACCCC;CTTATCTCCGC;+!EDS1#MA0294.1;-1;0.0182674;8.69528;1;9;TTTTTACCCC;ATTTTTCCG;-!NHP6B#MA0346.1;10;0.0184086;8.76247;1;10;TTTTTACCCC;TTTATTTATATATAATATGA;+
}}
}}

Latest revision as of 14:19, 7 September 2012

Full Name: 1-TWTTWVNSCS,CNhs11086,BestGuess:HMGA1_f1_HM09(0.621491710547325),T:376.0(31.95%),B:8855.4(18.54%),P:1e-27

Motif matrix
POACGT
10.3760.37641.736333.512
2181.9840.3760.376193.264
30.3760.3760.376374.872
4127.0880.3760.376248.16
5136.86483.8480.376155.288
6137.99286.85683.09668.056
792.12119.19271.81692.872
80.376197.024178.2240.376
93.76371.4880.3760.376
1047.752186.496141.00.376

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
hb#MA0049.110.0005503670.2619750.523959TTTTTACCCCTTTTTTATGC-
YPR196W#MA0437.1-10.001438930.6849290.6849299TTTTTACCCCATTTCTCCG+
STB5#MA0392.1-20.005626362.6781518TTTTTACCCCTAACACCG-
RGT1#MA0367.100.009606154.57253110TTTTTACCCCAATTTTTCCGG+
SFP1#MA0378.1120.01086845.1733819TTTTTACCCCCCGTAGAAAATTTTTTTCAAT-
TBP#MA0108.210.01397256.65093110TTTTTACCCCGTATAAAAGGCGGGG+
TBP#MA0108.210.01397256.65093110TTTTTACCCCGTATAAAAGGCGGGG+
YDR520C#MA0422.1-10.0150847.1799919TTTTTACCCCTTATCTCCGG-
SMP1#MA0383.1110.01531717.29096110TTTTTACCCCTTACCTATAATTAAATTAGCA+
YRR1#MA0439.100.0177898.46754110TTTTTACCCCCTTATCTCCGC+
EDS1#MA0294.1-10.01826748.6952819TTTTTACCCCATTTTTCCG-
NHP6B#MA0346.1100.01840868.76247110TTTTTACCCCTTTATTTATATATAATATGA+
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