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MacroAPE 1083:CCCGAAC,motif795: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.857;854.429;0.857;0.857!2;0.857;854.429;0.857;0.857!3;0.857;632.466;222.82;0.857!4;255.386;0.857;599.9;0.857!5;571.619;0.857;0.857;283.667...")
 
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57012!10789-110H6;0.870653!10828-111C9;0.306154!10788-110H5;0.387837!10792-110H9;0.643109!10765-110E9;0.67228!10829-111D1;0.919523!10830-111D2;0.931769!10831-111D3;0.602721!10832-111D4;0.700434!10833-111D5;0.644847!10764-110E8;0.377109!10770-110F5;0.428914!10399-106A3;0.754672!10400-106A4;0.484038!10405-106A9;0.458001!10834-111D6;0.576791!10835-111D7;0.528496!10836-111D8;0.482437!10837-111D9;0.311149!10699-109G6;0.644435!10802-111A1;0.808611!10796-110I4;0.57045!10010-101C1;0.0879877!10810-111A9;0.545266!10421-106C7;0.554135!10708-109H6;0.202674!12235-129G3;0.187938!12236-129G4;0.259239!12237-129G5;0.614655!10167-103B5;0.221579!10151-102I7;0.0376214!10428-106D5;0.0787135!10795-110I3;0.155694!10805-111A4;0.783587!10052-101G7;0.990271!10189-103D9;0.24506!10589-108D4;0.411816!10425-106D2;0.404329!10427-106D4;0.501608!10702-109G9;0.812908!10432-106D9;0.876268!10496-107C1;0.0208514!10718-109I7;0.102495!10011-101C2;0.527962!10053-101G8;0.133239!10686-109F2;0.476112!10084-102B3;0.683237!10012-101C3;0.0816298!10085-102B4;0.044101!10482-107A5;0.0344401!10419-106C5;0.013128!10080-102A8;0.0122194!10760-110E4;0.645037!10709-109H7;0.0455552!10710-109H8;0.0038062!10703-109H1;0.0189773!10719-109I8;0.247315!10642-109A3;0.262974!10177-103C6;0.384225!10164-103B2;0.0436349!10173-103C2;0.0764557!10166-103B4;0.0242974!10083-102B2;0.110171!10188-103D8;0.0434913!10552-107I3;0.020212!10553-107I4;0.117122!10013-101C4;0.157175!10536-107G5;0.22943!10618-108G6;0.983494!10423-106C9;0.196997!10785-110H2;0.150515!12238-129G6;0.22829!12239-129G7;0.743692!12240-129G8;0.904954!10416-106C2;0.562071!10801-110I9;0.425359!10766-110F1;0.746745!10824-111C5;0.107948!10825-111C6;0.247326!10826-111C7;0.147547!10454-106G4;0.1064!10409-106B4;0.23611!10638-108I8;0.357119!10636-108I6;0.0867904!10513-107D9;0.0244517!10420-106C6;0.0525609!10082-102B1;0.819821!10014-101C5;0.747817!10070-101I7;0.280435!10452-106G2;0.139787!10453-106G3;0.376789!10449-106F8;0.624222!10042-101F6;0.587544!10069-101I6;0.160989!10193-103E4;0.182278!10631-108I1;0.0439695!10438-106E6;0.568319!10488-107B2;0.0550107!10196-103E7;0.0693465!10071-101I8;0.393044!10071-101I8;0.0703699!10041-101F5;0.0401699!10451-106G1;0.214901!10450-106F9;0.456876!10604-108F1;0.838072!10605-108F2;0.00926887!10606-108F3;0.0140905!10603-108E9;0.00605154!10497-107C2;0.00858947!10448-106F7;0.00704364!10643-109A4;0.0177497!10426-106D3;0.0936437!10431-106D8;0.088374!10197-103E8;0.0686774!10443-106F2;0.256723!10815-111B5;0.0147152!10816-111B6;0.157942!10817-111B7;0.183965!10015-101C6;0.148755!10410-106B5;0.307979!10054-101G9;0.509407!10758-110E2;0.0470255!10711-109H9;0.0568539!10040-101F4;0.220113!10470-106I2;0.0575687!10415-106C1;0.0127459!10198-103E9;0.127671!10614-108G2;0.517719!10612-108F9;0.012908!10549-107H9;0.00366701!10615-108G3;0.560699!10487-107B1;0.255078!10433-106E1;0.311862!10688-109F4;0.0784824!10444-106F3;0.0452064!10444-106F3;0.73888!10485-107A8;0.742605!10413-106B8;0.0218092!10175-103C4;0.345668!10161-103A8;0.0835927!12131-128D7;0.185108!10624-108H3;0.963093!10712-109I1;0.725253!10205-103F7;0.702156!10206-103F8;0.0901922!10207-103F9;0.168513!10050-101G5;0.432594!10051-101G6;0.227903!10016-101C7;0.0809391!10046-101G1;0.0725725!10778-110G4;0.178817!10633-108I3;0.414802!10818-111B8;0.193226!10819-111B9;0.00375386!10820-111C1;0.00514713!10484-107A7;0.00281879!10808-111A7;0.249229!10169-103B7;0.95489!10153-102I9;0.0642264!13425-144D5;0.0970815!13433-144E4;0.497591!13437-144E8;0.585477!11904-125F5;0.785145!11905-125F6;0.803444!10039-101F3;0.344405!10791-110H8;0.0583806!10017-101C8;0.111994!10045-101F9;0.961741!10509-107D5;0.582662!10839-111E2;0.0205093!10692-109F8;0.886937!10079-102A7;0.118163!10078-102A6;0.091306!10721-110A1;0.137535!10569-108B2;0.437361!10570-108B3;0.930142!10571-108B4;0.332683!10647-109A8;0.524633!10752-110D5;0.215016!10782-110G8;0.460007!10726-110A6;0.801601!10018-101C9;0.0655212!10086-102B5;0.81514!10182-103D2;0.987958!10165-103B3;0.0763671!10499-107C4;0.104183!10408-106B3;0.186124!10019-101D1;0.00273634!10068-101I5;0.397893!10075-102A3;0.36876!10077-102A5;0.479585!10727-110A7;0.872787!10775-110G1;0.41915!10412-106B7;0.206685!12231-129F8;0.0114471!12232-129F9;0.753284!12233-129G1;0.665337!12234-129G2;0.884108!10414-106B9;0.770987!10170-103B8;0.179186!10183-103D3;0.0319434!10150-102I6;0.0419592!10174-103C3;0.0933132!10155-103A2;0.0999958!10038-101F2;0.121537!10838-111E1;0.0844973!10759-110E3;0.678156!10514-107E1;0.0860462!10465-106H6;0.449265!10691-109F7;0.346144!10843-111E6;0.103754!10844-111E7;0.336035!11747-123G1;0.295577!11748-123G2;0.645388!11749-123G3;0.944573!11750-123G4;0.649024!11751-123G5;0.595561!11840-124H4;0.661264!11752-123G6;0.916499!11753-123G7;0.886864!11754-123G8;0.663477!11755-123G9;0.792317!11756-123H1;0.257859!11833-124G6;0.644466!11760-123H5;0.657606!11836-124G9;0.874579!11758-123H3;0.972746!11835-124G8;0.493598!11762-123H7;0.453553!11838-124H2;0.686075!11757-123H2;0.578458!11759-123H4;0.344722!11761-123H6;0.637737!11842-124H6;0.875927!11837-124H1;0.633668!10568-108B1;0.583787!13230-141I8;0.0519518!13231-141I9;0.348697!10696-109G3;0.168036!10493-107B7;0.988904!10494-107B8;0.164747!10850-111F4;0.170895!10851-111F5;0.251169!10852-111F6;0.0386401!10853-111F7;0.137546!10854-111F8;0.0136124!10855-111F9;0.0648431!10856-111G1;0.283853!10847-111F1;0.0196613!10846-111E9;0.0889534!10848-111F2;0.0652675!10845-111E8;0.219667!10857-111G2;0.301387!10858-111G3;0.460623!10156-103A3;0.336729!11901-125F2;0.0844003!11902-125F3;0.598441!11903-125F4;0.5388!10689-109F5;0.280911!10648-109A9;0.196786!10784-110H1;0.64047!10744-110C6;0.0011029!10772-110F7;0.367884!10474-106I6;0.947893!10600-108E6;0.340482!10684-109E9;0.173321!12226-129F3;0.816524!12227-129F4;0.425051!10508-107D4;0.179817!10539-107G8;0.287849!10607-108F4;0.429528!10555-107I6;0.979733!10774-110F9;0.20979!10637-108I7;0.603841!10663-109C6;0.71805!10728-110A8;0.766824!10729-110A9;0.740191!10430-106D7;0.574218!10730-110B1;0.246506!10813-111B3;0.276258!10812-111B2;0.578287!10037-101F1;0.163837!10172-103C1;0.0586795!10163-103B1;0.041597!10076-102A4;0.122338!10073-102A1;0.0434636!10036-101E9;0.0532374!10195-103E6;0.0574943!10277-104E7;0.0431267!10434-106E2;0.265959!10550-107I1;0.0164339!10545-107H5;0.537868!10544-107H4;0.196293!10704-109H2;0.0269264!10510-107D6;0.344958!10558-107I9;0.0322964!10020-101D2;0.704384!10732-110B3;0.182461!10049-101G4;0.832195!10698-109G5;0.509269!10437-106E5;0.277328!10417-106C3;0.0228625!10035-101E8;0.0060391!10171-103B9;0.0586541!10157-103A4;0.0493977!10034-101E7;0.07852!10072-101I9;0.0719635!10199-103F1;0.0463206!10200-103F2;0.612711!10697-109G4;0.158179!10723-110A3;0.65139!10179-103C8;0.033668!10160-103A7;0.121919!10180-103C9;0.197785!10162-103A9;0.186303!10021-101D3;0.201724!10840-111E3;0.553156!10706-109H4;0.824116!10033-101E6;0.099103!10032-101E5;0.046368!10490-107B4;0.0500561!10439-106E7;0.00451354!10022-101D4;0.0280074!10176-103C5;0.37407!10469-106I1;0.0460105!10067-101I4;0.0810822!10411-106B6;0.183009!10471-106I3;0.00639403!10030-101E3;0.155944!10475-106I7;0.146653!10787-110H4;0.771635!10477-106I9;0.914652!10695-109G2;0.927775!11771-123I7;0.749551!11772-123I8;0.0960796!11773-123I9;0.299742!10093-102C3;0.250222!10442-106F1;0.609175!10442-106F1;0.152731!10201-103F3;0.146542!10639-108I9;0.180361!11843-124H7;0.397581!11841-124H5;0.327472!10693-109F9;0.139791!10436-106E4;0.169225!10483-107A6;0.00730862!10282-104F3;0.0971821!10023-101D5;0.271275!10066-101I3;0.188909!10065-101I2;0.14541!10800-110I8;0.125345!10610-108F7;0.543196!10841-111E4;0.953623!10541-107H1;0.870129!10842-111E5;0.960545!10562-108A4;0.221118!10024-101D6;0.544334!10064-101I1;0.664964!10609-108F6;0.253504!10048-101G3;0.593755!10781-110G7;0.653307!10181-103D1;0.921369!10159-103A6;0.0972907!10056-101H2;0.133065!10737-110B8;0.0560107!10025-101D7;0.803774!10044-101F8;0.622577!10424-106D1;0.743719!10463-106H4;0.87884!10616-108G4;0.0511298!10486-107A9;0.0836451!10062-101H8;0.00261184!10202-103F4;0.491476!10158-103A5;0.454806!10441-106E9;0.244285!10031-101E4;0.832915!10063-101H9;0.0484536!10063-101H9;0.0568335!11763-123H8;0.0863374!11765-123I1;0.417742!11768-123I4;0.935752!10807-111A6;0.488264!10790-110H7;0.199594!10798-110I6;0.418566!10786-110H3;0.947164!10591-108D6;0.152965!10593-108D8;0.0212105!10590-108D5;0.0768701!10026-101D8;0.0983238!10096-102C6;0.483253!10168-103B6;0.876413!10154-103A1;0.0409916!10209-103G2;0.155646!10061-101H7;0.163756!10027-101D9;0.200102!10043-101F7;0.393261!10783-110G9;0.800848!10028-101E1;0.283213!10060-101H6;0.968917!10203-103F5;0.765981!10059-101H5;0.144931!10047-101G2;0.161375!10029-101E2;0.695282!10058-101H4;0.484301!10418-106C4;0.197823!10492-107B6;0.25178!10694-109G1;0.0225689!10797-110I5;0.464202!10057-101H3;0.000139543!10100-102D1;0.14386!10055-101H1;0.278209!10204-103F6;0.212145!10191-103E2;0.56553!10563-108A5;0.298747
|name=CCCGAAC,motif795,CNhs13421,T:857.0(30.27%),B:14974.5(21.33%),P:1e-28
|name=CCCGAAC,motif795,CNhs13421,T:857.0(30.27%),B:14974.5(21.33%),P:1e-28
|tomtom_result=RAP1#MA0359.1;2;0.000608253;0.289528;0.579057;7;CCCGAAC;CACCCATACA;+!YBR239C#MA0420.1;1;0.00208496;0.992439;0.863778;7;CCCGAAC;ACCGGAAC;+!Deaf1#MA0185.1;0;0.00272199;1.29567;0.863778;6;CCCGAAC;CACGAA;-!ASG1#MA0275.1;0;0.00804395;3.82892;1;6;CCCGAAC;CCGGAA;+!RREB1#MA0073.1;1;0.00919621;4.3774;1;7;CCCGAAC;CCCCAAACCACCCCCCCCCC;+!Eip74EF#MA0026.1;0;0.0133839;6.37072;1;7;CCCGAAC;CCGGAAG;+!CAT8#MA0280.1;0;0.0134575;6.40576;1;6;CCCGAAC;CCGGAA;+!ASH1#MA0276.1;0;0.0172809;8.22572;1;7;CCCGAAC;CCCGATCCGG;-!RDS2#MA0362.1;1;0.0174433;8.30301;1;6;CCCGAAC;CCCCGAG;-
}}
}}

Latest revision as of 14:10, 7 September 2012

Full Name: CCCGAAC,motif795,CNhs13421,T:857.0(30.27%),B:14974.5(21.33%),P:1e-28

Motif matrix
POACGT
10.857854.4290.8570.857
20.857854.4290.8570.857
30.857632.466222.820.857
4255.3860.857599.90.857
5571.6190.8570.857283.667
6814.150.8570.85741.136
70.857854.4290.8570.857

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RAP1#MA0359.120.0006082530.2895280.5790577CCCGAACCACCCATACA+
YBR239C#MA0420.110.002084960.9924390.8637787CCCGAACACCGGAAC+
Deaf1#MA0185.100.002721991.295670.8637786CCCGAACCACGAA-
ASG1#MA0275.100.008043953.8289216CCCGAACCCGGAA+
RREB1#MA0073.110.009196214.377417CCCGAACCCCCAAACCACCCCCCCCCC+
Eip74EF#MA0026.100.01338396.3707217CCCGAACCCGGAAG+
CAT8#MA0280.100.01345756.4057616CCCGAACCCGGAA+
ASH1#MA0276.100.01728098.2257217CCCGAACCCCGATCCGG-
RDS2#MA0362.110.01744338.3030116CCCGAACCCCCGAG-
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