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MacroAPE 1083:11-TTTGAGGAAGTTG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;36.32;33.596;34.504;349.58!2;14.074;44.038;30.418;365.47!3;43.584;14.982;43.584;351.85!4;41.314;60.382;319.616;32.688!5;351.85;18.614;50.394...")
 
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.899507!11441-118I1;0.446681!10007-101B4;0.522237!11520-119H8;0.645578!11600-120H7;0.28676!11681-122H7;0.491521!11216-116B1;0.213788!12179-129A1;0.960189!12180-129A2;9.90008e-12!12181-129A3;3.42092e-10!12176-128I7;6.53321e-11!12177-128I8;1.12653e-11!12182-129A4;1.05267e-12!12183-129A5;2.67391e-12!12184-129A6;1.12959e-10!10809-111A8;5.62052e-13!10597-108E3;0.0187215!10717-109I6;0.0331485!10455-106G5;0.679806!10534-107G3;0.00631926!10429-106D6;0.0459157!10464-106H5;0.118881!10827-111C8;0.0488078!10789-110H6;4.95533e-05!10828-111C9;0.000175365!10788-110H5;0.00505965!10792-110H9;0.00336378!10765-110E9;0.000125963!10829-111D1;6.90763e-05!10830-111D2;3.6078e-10!10831-111D3;0.0246884!10832-111D4;0.00247395!10833-111D5;0.000413728!10764-110E8;1.76964e-05!10770-110F5;0.000124045!10399-106A3;0.00041388!10400-106A4;0.000154154!10405-106A9;0.00032245!10834-111D6;0.000111914!10835-111D7;4.12427e-07!10836-111D8;0.295403!10837-111D9;0.936694!10699-109G6;0.25408!10802-111A1;0.22906!10796-110I4;0.242226!10010-101C1;0.00271451!10810-111A9;0.703177!10421-106C7;0.000617756!10708-109H6;0.00290262!12235-129G3;0.113225!12236-129G4;0.830106!12237-129G5;0.26604!10167-103B5;0.229379!10151-102I7;0.0178912!10428-106D5;0.0318705!10795-110I3;0.821091!10805-111A4;0.557267!10052-101G7;0.0881777!10189-103D9;0.922508!10589-108D4;0.15094!10425-106D2;6.02536e-05!10427-106D4;0.0532175!10702-109G9;0.0775927!10432-106D9;0.6955!10496-107C1;0.0466806!10718-109I7;0.907374!10011-101C2;0.000500795!10053-101G8;0.96129!10686-109F2;9.01262e-08!10084-102B3;0.36205!10012-101C3;0.000262971!10085-102B4;0.0237296!10482-107A5;1.42206e-07!10419-106C5;0.175411!10080-102A8;0.192802!10760-110E4;0.300099!10709-109H7;0.323969!10710-109H8;0.0162828!10703-109H1;0.968081!10719-109I8;5.01926e-07!10642-109A3;0.00588567!10177-103C6;0.00200426!10164-103B2;0.0129305!10173-103C2;0.0222808!10166-103B4;0.00854998!10083-102B2;0.0098244!10188-103D8;7.96155e-06!10552-107I3;0.00840379!10553-107I4;0.372239!10013-101C4;0.21376!10536-107G5;0.827019!10618-108G6;0.306933!10423-106C9;0.766057!10785-110H2;0.941376!12238-129G6;0.389395!12239-129G7;0.122917!12240-129G8;0.887421!10416-106C2;0.00140995!10801-110I9;0.0297866!10766-110F1;0.0484307!10824-111C5;0.0207177!10825-111C6;0.442589!10826-111C7;0.613796!10454-106G4;0.840007!10409-106B4;0.335714!10638-108I8;0.0425701!10636-108I6;0.0455159!10513-107D9;0.0533556!10420-106C6;0.0047538!10082-102B1;2.08924e-06!10014-101C5;0.0111714!10070-101I7;0.0584499!10452-106G2;0.00812529!10453-106G3;0.226258!10449-106F8;0.00618738!10042-101F6;0.0027541!10069-101I6;0.0386129!10193-103E4;0.0781877!10631-108I1;0.003647!10438-106E6;0.0566306!10488-107B2;0.309427!10196-103E7;0.250722!10071-101I8;0.0587955!10071-101I8;0.117792!10041-101F5;0.000280599!10451-106G1;0.0255958!10450-106F9;0.0229355!10604-108F1;0.0502548!10605-108F2;0.122922!10606-108F3;0.535182!10603-108E9;0.273356!10497-107C2;0.341051!10448-106F7;0.0546109!10643-109A4;0.215504!10426-106D3;0.00683907!10431-106D8;0.937337!10197-103E8;0.83916!10443-106F2;0.244565!10815-111B5;0.0113529!10816-111B6;0.359826!10817-111B7;0.275581!10015-101C6;0.341384!10410-106B5;0.529245!10054-101G9;0.0249187!10758-110E2;0.0915988!10711-109H9;0.0704711!10040-101F4;0.496736!10470-106I2;0.00440898!10415-106C1;0.589348!10198-103E9;0.520383!10614-108G2;0.0765863!10612-108F9;0.0550543!10549-107H9;0.0504496!10615-108G3;2.97855e-05!10487-107B1;3.21968e-05!10433-106E1;0.406879!10688-109F4;0.0453276!10444-106F3;0.583358!10444-106F3;0.764548!10485-107A8;0.912171!10413-106B8;0.644654!10175-103C4;0.00668348!10161-103A8;0.0158082!12131-128D7;0.261352!10624-108H3;0.000379996!10712-109I1;0.125356!10205-103F7;0.0294358!10206-103F8;0.355967!10207-103F9;0.0993947!10050-101G5;0.991612!10051-101G6;0.26095!10016-101C7;0.176869!10046-101G1;0.63296!10778-110G4;0.29299!10633-108I3;0.201476!10818-111B8;0.00213982!10819-111B9;0.0150357!10820-111C1;0.0181287!10484-107A7;0.0175268!10808-111A7;5.14857e-11!10169-103B7;0.268516!10153-102I9;0.0204499!13425-144D5;0.03322!13433-144E4;0.000167541!13437-144E8;5.11723e-05!11904-125F5;0.000228027!11905-125F6;0.000461305!10039-101F3;0.032489!10791-110H8;0.00651093!10017-101C8;0.518239!10045-101F9;0.406307!10509-107D5;0.103424!10839-111E2;0.167586!10692-109F8;0.386584!10079-102A7;0.0717712!10078-102A6;0.197801!10721-110A1;0.245839!10569-108B2;0.0357012!10570-108B3;0.125357!10571-108B4;0.0900409!10647-109A8;0.167978!10752-110D5;0.0668547!10782-110G8;0.00692277!10726-110A6;0.76286!10018-101C9;0.164288!10086-102B5;0.233367!10182-103D2;0.307532!10165-103B3;0.0807928!10499-107C4;0.114947!10408-106B3;0.00849217!10019-101D1;0.586266!10068-101I5;0.269026!10075-102A3;0.565009!10077-102A5;0.268597!10727-110A7;1.00248e-05!10775-110G1;0.0702025!10412-106B7;2.64598e-05!12231-129F8;0.201998!12232-129F9;0.0279572!12233-129G1;0.269479!12234-129G2;0.151588!10414-106B9;0.0667612!10170-103B8;0.0422337!10183-103D3;0.00610292!10150-102I6;0.00454382!10174-103C3;0.0230132!10155-103A2;0.071236!10038-101F2;0.303907!10838-111E1;0.142576!10759-110E3;0.000991881!10514-107E1;0.162112!10465-106H6;0.00018424!10691-109F7;0.0102064!10843-111E6;0.756826!10844-111E7;2.16512e-05!11747-123G1;2.27119e-09!11748-123G2;0.329118!11749-123G3;0.85182!11750-123G4;0.718754!11751-123G5;0.36879!11840-124H4;0.494163!11752-123G6;0.561656!11753-123G7;0.244961!11754-123G8;0.267445!11755-123G9;0.9461!11756-123H1;0.778219!11833-124G6;0.614384!11760-123H5;0.953848!11836-124G9;0.391265!11758-123H3;0.481533!11835-124G8;0.354306!11762-123H7;0.729725!11838-124H2;0.618042!11757-123H2;0.773136!11759-123H4;0.309627!11761-123H6;0.995094!11842-124H6;0.870699!11837-124H1;0.227534!10568-108B1;0.582186!13230-141I8;0.0895515!13231-141I9;0.975217!10696-109G3;0.816101!10493-107B7;0.180774!10494-107B8;0.142734!10850-111F4;0.521256!10851-111F5;0.0354143!10852-111F6;0.543226!10853-111F7;0.696471!10854-111F8;0.961518!10855-111F9;0.639794!10856-111G1;0.614799!10847-111F1;0.765215!10846-111E9;0.836125!10848-111F2;0.33291!10845-111E8;0.433353!10857-111G2;0.0246692!10858-111G3;0.090531!10156-103A3;0.88294!11901-125F2;0.0333947!11902-125F3;0.12723!11903-125F4;0.207766!10689-109F5;0.0582442!10648-109A9;0.141556!10784-110H1;0.0742459!10744-110C6;0.947071!10772-110F7;0.015506!10474-106I6;4.32678e-05!10600-108E6;0.0711083!10684-109E9;0.0987669!12226-129F3;0.501168!12227-129F4;0.168357!10508-107D4;0.518146!10539-107G8;1.57368e-06!10607-108F4;7.62949e-05!10555-107I6;0.00945432!10774-110F9;4.6762e-07!10637-108I7;0.015868!10663-109C6;0.00111457!10728-110A8;0.00353604!10729-110A9;0.00310095!10430-106D7;0.70703!10730-110B1;0.109276!10813-111B3;2.08341e-06!10812-111B2;0.478869!10037-101F1;0.0977171!10172-103C1;0.0114317!10163-103B1;0.00220297!10076-102A4;0.0365727!10073-102A1;0.00118153!10036-101E9;2.00099e-06!10195-103E6;0.0014781!10277-104E7;0.00310161!10434-106E2;0.00271483!10550-107I1;0.850321!10545-107H5;0.145452!10544-107H4;0.705206!10704-109H2;0.684455!10510-107D6;0.437518!10558-107I9;0.595522!10020-101D2;0.363835!10732-110B3;0.64417!10049-101G4;0.831959!10698-109G5;0.0228509!10437-106E5;0.81449!10417-106C3;0.715695!10035-101E8;0.156957!10171-103B9;0.0048199!10157-103A4;0.00192252!10034-101E7;0.0214159!10072-101I9;0.00507151!10199-103F1;1.76926e-07!10200-103F2;0.966977!10697-109G4;0.194821!10723-110A3;0.00152379!10179-103C8;0.616061!10160-103A7;0.0168411!10180-103C9;0.147142!10162-103A9;0.00204203!10021-101D3;0.0539363!10840-111E3;0.0874378!10706-109H4;0.0702641!10033-101E6;0.00157029!10032-101E5;0.151807!10490-107B4;0.00123988!10439-106E7;0.0765247!10022-101D4;0.157673!10176-103C5;0.627975!10469-106I1;0.00946518!10067-101I4;0.00260737!10411-106B6;0.0141298!10471-106I3;0.000920728!10030-101E3;0.121918!10475-106I7;0.140103!10787-110H4;0.000141098!10477-106I9;0.000687522!10695-109G2;0.00744594!11771-123I7;0.315806!11772-123I8;0.537426!11773-123I9;0.312516!10093-102C3;0.0166518!10442-106F1;0.839302!10442-106F1;0.687439!10201-103F3;0.740412!10639-108I9;0.139342!11843-124H7;0.0487468!11841-124H5;0.00538874!10693-109F9;0.143763!10436-106E4;0.00743622!10483-107A6;0.619179!10282-104F3;0.00995163!10023-101D5;0.00713983!10066-101I3;0.0664761!10065-101I2;0.186849!10800-110I8;0.553543!10610-108F7;0.000284874!10841-111E4;1.16031e-05!10541-107H1;3.14154e-05!10842-111E5;0.00873555!10562-108A4;2.54211e-06!10024-101D6;0.0102203!10064-101I1;0.103725!10609-108F6;0.0203767!10048-101G3;0.932926!10781-110G7;0.237319!10181-103D1;0.0103674!10159-103A6;0.176452!10056-101H2;0.583441!10737-110B8;0.013572!10025-101D7;0.586761!10044-101F8;4.65618e-07!10424-106D1;8.18272e-05!10463-106H4;0.16594!10616-108G4;0.752094!10486-107A9;0.703441!10062-101H8;0.276543!10202-103F4;0.0560011!10158-103A5;0.658284!10441-106E9;0.580404!10031-101E4;0.0217199!10063-101H9;0.00120309!10063-101H9;2.40229e-05!11763-123H8;0.0867618!11765-123I1;0.223185!11768-123I4;0.865429!10807-111A6;0.25858!10790-110H7;0.123236!10798-110I6;0.0487867!10786-110H3;0.00186485!10591-108D6;0.0153723!10593-108D8;0.0801406!10590-108D5;0.108521!10026-101D8;0.0431482!10096-102C6;0.548982!10168-103B6;0.00637709!10154-103A1;0.0177061!10209-103G2;0.103254!10061-101H7;0.644676!10027-101D9;0.239357!10043-101F7;0.000349963!10783-110G9;0.00101482!10028-101E1;0.118002!10060-101H6;0.149095!10203-103F5;0.0553241!10059-101H5;0.106506!10047-101G2;0.135381!10029-101E2;0.00831159!10058-101H4;0.138777!10418-106C4;0.457084!10492-107B6;0.967728!10694-109G1;0.198321!10797-110I5;0.0348219!10057-101H3;0.00339415!10100-102D1;0.676894!10055-101H1;0.258879!10204-103F6;0.241669!10191-103E2;0.68801!10563-108A5;0.0501478
|name=11-TTTGAGGAAGTTG,CNhs10852,BestGuess:ETV4_f1_HM09(0.727516093263617),T:454.0(6.03%),B:1264.6(3.06%),P:1e-39
|name=11-TTTGAGGAAGTTG,CNhs10852,BestGuess:ETV4_f1_HM09(0.727516093263617),T:454.0(6.03%),B:1264.6(3.06%),P:1e-39
|tomtom_result=SPI1#MA0080.2;-4;4.17593e-06;0.00198774;0.00397028;7;TTTGAGGAAGTTG;AGGAAGT;+!ELF5#MA0136.1;-3;0.00088146;0.419575;0.419026;9;TTTGAGGAAGTTG;AAGGAAGTA;-!SPIB#MA0081.1;-2;0.00134414;0.639809;0.425981;7;TTTGAGGAAGTTG;AGAGGAA;+!FEV#MA0156.1;-3;0.0020477;0.974705;0.456594;8;TTTGAGGAAGTTG;CAGGAAAT;+!Stat3#MA0144.1;0;0.00240122;1.14298;0.456594;10;TTTGAGGAAGTTG;TTCCAGGAAG;+!SPI1#MA0080.2;-4;0.00343995;1.63742;0.545092;6;TTTGAGGAAGTTG;CGGAAG;+!GCR2#MA0305.1;-4;0.00615585;2.93019;0.824278;7;TTTGAGGAAGTTG;AGGAAGC;-!ETS1#MA0098.1;-4;0.00693579;3.30144;0.824278;6;TTTGAGGAAGTTG;CGGAAA;-!MIZF#MA0131.1;-3;0.00817275;3.89023;0.863364;10;TTTGAGGAAGTTG;GCGGACGTTA;-!SPT2#MA0387.1;1;0.0127018;6.04607;0.998691;9;TTTGAGGAAGTTG;AATTAAAGAA;+!Myb#MA0100.1;-5;0.0132661;6.31466;0.998691;8;TTTGAGGAAGTTG;GGCCGTTG;+!z#MA0255.1;-1;0.0159907;7.61158;0.998691;10;TTTGAGGAAGTTG;TTGAGTGATT;+!RDR1#MA0360.1;-2;0.0197504;9.40118;0.998691;8;TTTGAGGAAGTTG;TGCGGAAC;+!Eip74EF#MA0026.1;-3;0.0201681;9.60002;0.998691;7;TTTGAGGAAGTTG;CCGGAAG;+
}}
}}

Latest revision as of 14:06, 7 September 2012

Full Name: 11-TTTGAGGAAGTTG,CNhs10852,BestGuess:ETV4_f1_HM09(0.727516093263617),T:454.0(6.03%),B:1264.6(3.06%),P:1e-39

Motif matrix
POACGT
136.3233.59634.504349.58
214.07444.03830.418365.47
343.58414.98243.584351.85
441.31460.382319.61632.688
5351.8518.61450.39433.142
643.5848.172367.28634.958
740.8626.332365.92420.884
8365.4737.68225.87824.97
9379.54414.52823.15436.774
1039.04435.866337.77641.314
1146.76238.13639.498329.604
1245.85416.79858.112333.236
1348.57838.136324.15643.13

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPI1#MA0080.2-44.17593e-060.001987740.003970287TTTGAGGAAGTTGAGGAAGT+
ELF5#MA0136.1-30.000881460.4195750.4190269TTTGAGGAAGTTGAAGGAAGTA-
SPIB#MA0081.1-20.001344140.6398090.4259817TTTGAGGAAGTTGAGAGGAA+
FEV#MA0156.1-30.00204770.9747050.4565948TTTGAGGAAGTTGCAGGAAAT+
Stat3#MA0144.100.002401221.142980.45659410TTTGAGGAAGTTGTTCCAGGAAG+
SPI1#MA0080.2-40.003439951.637420.5450926TTTGAGGAAGTTGCGGAAG+
GCR2#MA0305.1-40.006155852.930190.8242787TTTGAGGAAGTTGAGGAAGC-
ETS1#MA0098.1-40.006935793.301440.8242786TTTGAGGAAGTTGCGGAAA-
MIZF#MA0131.1-30.008172753.890230.86336410TTTGAGGAAGTTGGCGGACGTTA-
SPT2#MA0387.110.01270186.046070.9986919TTTGAGGAAGTTGAATTAAAGAA+
Myb#MA0100.1-50.01326616.314660.9986918TTTGAGGAAGTTGGGCCGTTG+
z#MA0255.1-10.01599077.611580.99869110TTTGAGGAAGTTGTTGAGTGATT+
RDR1#MA0360.1-20.01975049.401180.9986918TTTGAGGAAGTTGTGCGGAAC+
Eip74EF#MA0026.1-30.02016819.600020.9986917TTTGAGGAAGTTGCCGGAAG+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:11-TTTGAGGAAGTTG&oldid=2134242"