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MacroAPE 1083:5-CGGGAAACTAC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;112.416;807.99;133.494;117.1!2;139.349;120.613;782.228;128.81!3;97.193;71.431;894.644;107.732!4;91.338;100.706;896.986;81.97!5;877.079;114.7...")
 
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2-129A4;0.00642945!12183-129A5;0.0031899!12184-129A6;0.00659508!10809-111A8;0.00299991!10597-108E3;0.348089!10717-109I6;0.601046!10455-106G5;0.191445!10534-107G3;0.264997!10429-106D6;0.91931!10464-106H5;0.640799!10827-111C8;0.917787!10789-110H6;0.594012!10828-111C9;0.40558!10788-110H5;0.299886!10792-110H9;0.990275!10765-110E9;0.756336!10829-111D1;0.667509!10830-111D2;0.969505!10831-111D3;0.448763!10832-111D4;0.83363!10833-111D5;0.594679!10764-110E8;0.556078!10770-110F5;0.650395!10399-106A3;0.424471!10400-106A4;0.790124!10405-106A9;0.68111!10834-111D6;0.6786!10835-111D7;0.531993!10836-111D8;0.540154!10837-111D9;0.877378!10699-109G6;0.811942!10802-111A1;0.243484!10796-110I4;0.549324!10010-101C1;0.647623!10810-111A9;0.654947!10421-106C7;0.216256!10708-109H6;0.275715!12235-129G3;0.814256!12236-129G4;0.0835362!12237-129G5;0.795432!10167-103B5;0.356283!10151-102I7;0.0854232!10428-106D5;0.30355!10795-110I3;0.00395571!10805-111A4;0.301216!10052-101G7;0.357929!10189-103D9;0.847122!10589-108D4;0.108689!10425-106D2;0.087412!10427-106D4;0.881678!10702-109G9;0.108003!10432-106D9;0.365604!10496-107C1;0.0956386!10718-109I7;0.513394!10011-101C2;0.72507!10053-101G8;0.894822!10686-109F2;0.00889887!10084-102B3;0.608535!10012-101C3;0.0596148!10085-102B4;0.118693!10482-107A5;0.011742!10419-106C5;0.703662!10080-102A8;0.629788!10760-110E4;0.446338!10709-109H7;0.532803!10710-109H8;0.553927!10703-109H1;0.761898!10719-109I8;0.00103815!10642-109A3;0.0149648!10177-103C6;0.0177427!10164-103B2;0.298224!10173-103C2;0.222819!10166-103B4;0.0363268!10083-102B2;0.13316!10188-103D8;0.0127068!10552-107I3;0.136482!10553-107I4;0.985717!10013-101C4;0.26576!10536-107G5;0.570211!10618-108G6;0.45725!10423-106C9;0.660081!10785-110H2;0.250441!12238-129G6;0.869841!12239-129G7;0.0716533!12240-129G8;0.947946!10416-106C2;0.0613469!10801-110I9;0.788507!10766-110F1;0.0903866!10824-111C5;0.400925!10825-111C6;0.548098!10826-111C7;0.668272!10454-106G4;0.757726!10409-106B4;0.942286!10638-108I8;0.435804!10636-108I6;0.455877!10513-107D9;0.188149!10420-106C6;0.708478!10082-102B1;0.102288!10014-101C5;0.761009!10070-101I7;0.806383!10452-106G2;0.507321!10453-106G3;0.00572884!10449-106F8;0.0595981!10042-101F6;0.0473177!10069-101I6;0.236567!10193-103E4;0.329513!10631-108I1;0.0685834!10438-106E6;0.515152!10488-107B2;0.0974032!10196-103E7;0.477804!10071-101I8;0.426389!10071-101I8;0.566947!10041-101F5;0.00846418!10451-106G1;0.802447!10450-106F9;0.284716!10604-108F1;0.328888!10605-108F2;0.269034!10606-108F3;0.0643409!10603-108E9;0.144258!10497-107C2;0.250909!10448-106F7;0.678655!10643-109A4;0.569892!10426-106D3;0.531279!10431-106D8;0.0541947!10197-103E8;0.105266!10443-106F2;0.398133!10815-111B5;0.489724!10816-111B6;0.793891!10817-111B7;0.732277!10015-101C6;0.839464!10410-106B5;0.934372!10054-101G9;0.325485!10758-110E2;0.184285!10711-109H9;0.564155!10040-101F4;0.0506859!10470-106I2;0.0702701!10415-106C1;0.999731!10198-103E9;0.0636556!10614-108G2;0.912076!10612-108F9;0.0507054!10549-107H9;0.448862!10615-108G3;0.734931!10487-107B1;0.0499969!10433-106E1;0.659197!10688-109F4;0.208697!10444-106F3;0.188027!10444-106F3;0.623963!10485-107A8;0.502715!10413-106B8;0.908937!10175-103C4;0.0441275!10161-103A8;0.265307!12131-128D7;0.522799!10624-108H3;0.0242924!10712-109I1;0.458093!10205-103F7;0.234211!10206-103F8;0.799229!10207-103F9;0.243038!10050-101G5;0.0279861!10051-101G6;0.581771!10016-101C7;0.437475!10046-101G1;0.785061!10778-110G4;0.622804!10633-108I3;0.843196!10818-111B8;0.138207!10819-111B9;0.820347!10820-111C1;0.830197!10484-107A7;0.858627!10808-111A7;0.515133!10169-103B7;0.499957!10153-102I9;0.19381!13425-144D5;0.265276!13433-144E4;0.0739396!13437-144E8;0.121184!11904-125F5;0.0938324!11905-125F6;0.00114248!10039-101F3;8.03555e-07!10791-110H8;0.0810083!10017-101C8;0.906938!10045-101F9;0.968978!10509-107D5;0.743058!10839-111E2;0.286233!10692-109F8;0.0887619!10079-102A7;0.059134!10078-102A6;0.279686!10721-110A1;0.906727!10569-108B2;0.739889!10570-108B3;0.0262055!10571-108B4;0.0449756!10647-109A8;0.00502132!10752-110D5;0.921645!10782-110G8;0.829716!10726-110A6;0.126536!10018-101C9;0.883767!10086-102B5;0.624856!10182-103D2;0.621106!10165-103B3;0.157773!10499-107C4;0.340656!10408-106B3;0.926821!10019-101D1;0.0560068!10068-101I5;0.211231!10075-102A3;0.263505!10077-102A5;0.294777!10727-110A7;0.0162528!10775-110G1;0.207033!10412-106B7;0.0359229!12231-129F8;0.0767867!12232-129F9;0.01999!12233-129G1;0.0249665!12234-129G2;0.0214215!10414-106B9;0.0312234!10170-103B8;0.380902!10183-103D3;0.0762325!10150-102I6;0.0877963!10174-103C3;0.201206!10155-103A2;0.301334!10038-101F2;0.410469!10838-111E1;0.260491!10759-110E3;0.125653!10514-107E1;0.780711!10465-106H6;0.97754!10691-109F7;0.162503!10843-111E6;0.00588339!10844-111E7;0.012661!11747-123G1;0.00050318!11748-123G2;0.399203!11749-123G3;0.345303!11750-123G4;0.535642!11751-123G5;0.421665!11840-124H4;0.29806!11752-123G6;0.129977!11753-123G7;0.668739!11754-123G8;0.616975!11755-123G9;0.46003!11756-123H1;0.708083!11833-124G6;0.757705!11760-123H5;0.644518!11836-124G9;0.717774!11758-123H3;0.943047!11835-124G8;0.418301!11762-123H7;0.455059!11838-124H2;0.621324!11757-123H2;0.631386!11759-123H4;0.7989!11761-123H6;0.495914!11842-124H6;0.990863!11837-124H1;0.895349!10568-108B1;0.744707!13230-141I8;0.30811!13231-141I9;0.0585137!10696-109G3;0.0544161!10493-107B7;0.811362!10494-107B8;0.162135!10850-111F4;0.7823!10851-111F5;0.787673!10852-111F6;0.912676!10853-111F7;0.765139!10854-111F8;0.785668!10855-111F9;0.0459717!10856-111G1;0.235809!10847-111F1;0.0805645!10846-111E9;0.559355!10848-111F2;0.89823!10845-111E8;0.944433!10857-111G2;0.914809!10858-111G3;0.994482!10156-103A3;0.941196!11901-125F2;0.222986!11902-125F3;0.0458809!11903-125F4;0.0388721!10689-109F5;0.0764145!10648-109A9;0.287253!10784-110H1;0.0904836!10744-110C6;0.348399!10772-110F7;0.0295455!10474-106I6;0.507797!10600-108E6;0.389995!10684-109E9;0.321077!12226-129F3;0.481961!12227-129F4;0.97547!10508-107D4;0.750873!10539-107G8;8.25541e-05!10607-108F4;4.30864e-05!10555-107I6;0.0072091!10774-110F9;0.00269425!10637-108I7;0.0401711!10663-109C6;0.0143648!10728-110A8;0.284463!10729-110A9;0.273807!10430-106D7;0.377959!10730-110B1;0.454265!10813-111B3;8.8086e-05!10812-111B2;0.129049!10037-101F1;0.524574!10172-103C1;0.113243!10163-103B1;0.0727666!10076-102A4;0.25139!10073-102A1;0.0541281!10036-101E9;0.00577229!10195-103E6;0.0700927!10277-104E7;0.0836322!10434-106E2;0.0327245!10550-107I1;0.352377!10545-107H5;0.973374!10544-107H4;0.153058!10704-109H2;0.229976!10510-107D6;0.920513!10558-107I9;0.0295098!10020-101D2;0.0307454!10732-110B3;0.622875!10049-101G4;0.192116!10698-109G5;0.749354!10437-106E5;0.541542!10417-106C3;0.0747188!10035-101E8;0.0575161!10171-103B9;0.0870723!10157-103A4;0.0861278!10034-101E7;0.198349!10072-101I9;0.0887801!10199-103F1;0.0073759!10200-103F2;0.681075!10697-109G4;0.575318!10723-110A3;0.104218!10179-103C8;0.0115973!10160-103A7;0.276311!10180-103C9;0.414181!10162-103A9;0.0359997!10021-101D3;0.316078!10840-111E3;0.964928!10706-109H4;0.193209!10033-101E6;0.133408!10032-101E5;0.103518!10490-107B4;0.0575418!10439-106E7;0.778842!10022-101D4;0.866629!10176-103C5;0.791645!10469-106I1;0.129436!10067-101I4;0.757254!10411-106B6;0.163172!10471-106I3;0.0881561!10030-101E3;0.138078!10475-106I7;0.335688!10787-110H4;0.110248!10477-106I9;0.427403!10695-109G2;0.0662075!11771-123I7;0.388804!11772-123I8;0.461155!11773-123I9;0.829963!10093-102C3;0.195717!10442-106F1;0.950307!10442-106F1;0.275479!10201-103F3;0.191673!10639-108I9;0.731394!11843-124H7;0.00595963!11841-124H5;0.207283!10693-109F9;0.570966!10436-106E4;0.813731!10483-107A6;0.631797!10282-104F3;0.141462!10023-101D5;0.435559!10066-101I3;0.891089!10065-101I2;0.131924!10800-110I8;0.460346!10610-108F7;0.0296228!10841-111E4;0.00319325!10541-107H1;0.274212!10842-111E5;0.407785!10562-108A4;0.0306279!10024-101D6;0.0209528!10064-101I1;0.958033!10609-108F6;0.078575!10048-101G3;0.178256!10781-110G7;0.798767!10181-103D1;0.0189182!10159-103A6;0.288346!10056-101H2;0.78582!10737-110B8;0.0816354!10025-101D7;0.556178!10044-101F8;0.00192506!10424-106D1;0.0497564!10463-106H4;0.11216!10616-108G4;0.139288!10486-107A9;0.0506277!10062-101H8;0.508005!10202-103F4;0.528076!10158-103A5;0.832769!10441-106E9;0.620623!10031-101E4;0.0239048!10063-101H9;0.0702593!10063-101H9;0.00680466!11763-123H8;0.375382!11765-123I1;0.220731!11768-123I4;0.15412!10807-111A6;0.0951339!10790-110H7;0.129959!10798-110I6;0.0148911!10786-110H3;0.489218!10591-108D6;0.13716!10593-108D8;0.371923!10590-108D5;0.556554!10026-101D8;0.790367!10096-102C6;0.364817!10168-103B6;0.107759!10154-103A1;0.200335!10209-103G2;0.465862!10061-101H7;0.785088!10027-101D9;0.133201!10043-101F7;0.00547785!10783-110G9;0.000775589!10028-101E1;0.73268!10060-101H6;0.713351!10203-103F5;0.434404!10059-101H5;0.555889!10047-101G2;0.346775!10029-101E2;0.015864!10058-101H4;0.3658!10418-106C4;0.392895!10492-107B6;0.0251266!10694-109G1;0.113816!10797-110I5;0.00534417!10057-101H3;0.855412!10100-102D1;0.180426!10055-101H1;0.681924!10204-103F6;0.148642!10191-103E2;0.151522!10563-108A5;0.63403
|name=5-CGGGAAACTAC,CNhs13471,BestGuess:TF65_f2_HM09(0.69277072681268),T:1171.0(14.88%),B:3229.7(7.85%),P:1e-95
|name=5-CGGGAAACTAC,CNhs13471,BestGuess:TF65_f2_HM09(0.69277072681268),T:1171.0(14.88%),B:3229.7(7.85%),P:1e-95
|tomtom_result=Su(H)#MA0085.1;3;0.00396925;1.88936;1;11;CGGGAAACTAC;CTGTGGGAAACGAGAT;+!En1#MA0027.1;-2;0.00411143;1.95704;1;9;CGGGAAACTAC;GAACACTACTT;-!YPR196W#MA0437.1;0;0.00457939;2.17979;1;9;CGGGAAACTAC;CGGAGAAAT;-!RELA#MA0107.1;-2;0.00507664;2.41648;1;9;CGGGAAACTAC;GGAAATTCCC;-!REB1#MA0363.1;1;0.00617426;2.93895;1;8;CGGGAAACTAC;CCGGGTAAC;-!REL#MA0101.1;-2;0.00996263;4.74221;1;9;CGGGAAACTAC;GGAAATCCCC;-!EDS1#MA0294.1;0;0.0114;5.42641;1;9;CGGGAAACTAC;CGGAAAAAT;+!GCR2#MA0305.1;-1;0.0138177;6.57724;1;7;CGGGAAACTAC;AGGAAGC;-!PUT3#MA0358.1;2;0.0144455;6.87605;1;6;CGGGAAACTAC;CCCGGGAA;+!dl_2#MA0023.1;-1;0.015157;7.21473;1;10;CGGGAAACTAC;GGAAAACCCC;-!dl_1#MA0022.1;0;0.0154905;7.37346;1;11;CGGGAAACTAC;CGGAAAAACCCC;-!NF-kappaB#MA0061.1;-2;0.0188866;8.99002;1;9;CGGGAAACTAC;GGAAATTCCC;-!Eip74EF#MA0026.1;0;0.0188964;8.99471;1;7;CGGGAAACTAC;CCGGAAG;+!GAL4#MA0299.1;2;0.0206183;9.81433;1;11;CGGGAAACTAC;CGGGGAACAGTACTC;+
}}
}}

Latest revision as of 14:05, 7 September 2012

Full Name: 5-CGGGAAACTAC,CNhs13471,BestGuess:TF65_f2_HM09(0.69277072681268),T:1171.0(14.88%),B:3229.7(7.85%),P:1e-95

Motif matrix
POACGT
1112.416807.99133.494117.1
2139.349120.613782.228128.81
397.19371.431894.644107.732
491.338100.706896.98681.97
5877.079114.75888.99690.167
6887.61883.141115.92984.312
7891.13193.68101.87784.312
898.364838.436114.758119.442
9121.784137.007108.903803.306
10799.793126.468121.784122.955
1197.193887.61899.53586.654

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Su(H)#MA0085.130.003969251.88936111CGGGAAACTACCTGTGGGAAACGAGAT+
En1#MA0027.1-20.004111431.9570419CGGGAAACTACGAACACTACTT-
YPR196W#MA0437.100.004579392.1797919CGGGAAACTACCGGAGAAAT-
RELA#MA0107.1-20.005076642.4164819CGGGAAACTACGGAAATTCCC-
REB1#MA0363.110.006174262.9389518CGGGAAACTACCCGGGTAAC-
REL#MA0101.1-20.009962634.7422119CGGGAAACTACGGAAATCCCC-
EDS1#MA0294.100.01145.4264119CGGGAAACTACCGGAAAAAT+
GCR2#MA0305.1-10.01381776.5772417CGGGAAACTACAGGAAGC-
PUT3#MA0358.120.01444556.8760516CGGGAAACTACCCCGGGAA+
dl_2#MA0023.1-10.0151577.21473110CGGGAAACTACGGAAAACCCC-
dl_1#MA0022.100.01549057.37346111CGGGAAACTACCGGAAAAACCCC-
NF-kappaB#MA0061.1-20.01888668.9900219CGGGAAACTACGGAAATTCCC-
Eip74EF#MA0026.100.01889648.9947117CGGGAAACTACCCGGAAG+
GAL4#MA0299.120.02061839.81433111CGGGAAACTACCGGGGAACAGTACTC+
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